Pseudoliparis swirei (Mariana hadal snailfish): 130210351
Help
Entry
130210351 CDS
T09868
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130210351 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pswi03041
]
130210351 (prpf8)
Spliceosome [BR:
pswi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
130210351 (prpf8)
Complex C
U5 SnRNP specific factors
130210351 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
130210351
NCBI-ProteinID:
XP_056296488
LinkDB
All DBs
Position
20:25960879..25978817
Genome browser
AA seq
2338 aa
AA seq
DB search
MAGTFVYRGAPPGMPPGVPPPVTIPDYMSEEKLQEKARKWQNLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDSEEDLSVAEWLYEHQPLKDTNKFVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDFNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYAEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETTEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
PTESAHPIRLYCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKMTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEVYNADREDMYA
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtaccttcgtctacagaggtgcccctccagggatgcccccaggtgtacctcct
cctgttactatcccggattacatgtctgaagaaaaactgcaagagaaagcaagaaaatgg
cagaacttgcaagcaaagcgctactcagaaaagagaaagtttggctttgtggatgcacag
aaggaagacatgccacctgagcatgtccgcaagatcatcagggaccatggagacatgacg
aatagaaagtttcgtcatgacaagagggtgtacctcggtgccctcaagtacatgccccac
gctgtactgaagctgctggaaaacatgcccatgccctgggaacagatcagagacgtgccc
gtcctctaccacatcactggagctatttcctttgtgaatgaaattccctgggtcatcgag
ccagtctacatcgcccagtggggcaccatgtggatcatgatgcgacgtgagaagcgggat
cgtcggcacttcaagcggatgcgctttccaccatttgatgatgaggagccgccgctggac
tacgccgacaacatccttgatgtagaaccactcgaggcaatccagatggagctggactct
gaggaagacttgtcagttgcagagtggctctatgagcaccaacccctcaaagacactaac
aagtttgtaaatggcaccacttaccgccgctggcagttcacgctgcccatgatgtccaca
ctataccgcctggccaatcagctgctcacggacctggtggatttcaattacttctatctg
tttgacctcaaggccttcttcacttccaaggccttgaatatggccatccctgggggaccg
aagtttgagccactggttagggacatcaacctccaggacgaagactggaatgagttcaat
gacatcaacaagatcatcatccgacagcctatcaggacggagtacaaaatcgccttcccc
tacctgtacaacaacctgccgcaccatgtccacctcacctggtatcacacacccaatgtg
gtgttcatcaagacggaggatccagatctcccagcgttctacttcgacccgctgatcaac
cccatctcacacagacactctgtcaagagtcaggagcctctgcctgatgacgatgaggag
tttgagcttccggagtatgcagagcccttcctcaaggagacccctctctacaccgacaac
actgccaacggcatcgctctgctgtgggccccgagacccttcaacctccgctctgggcgc
acacggcgtgccatagacatccccctgatcaagaactggtaccgcgagcactgccccgca
ggacagccagtgaaagtgcgcgtgtcgtaccagaagctgctgaagtactatgtgctcaat
gctcttaaacacagaccacccaaagcccagaagaagaggtatctgttccgctccttcaag
gccaccaagttctttcagtccaccaagctggactgggtggaggtgggcctgcaggtttgc
cgacagggttacaacatgctcaatctgctgatccaccgtaagaacctcaactacctgcat
ctcgactacaacttcaacctgaagcccgtcaagacgctgaccacaaaggaaagaaagaag
tcccgattcggtaacgcctttcacttgtgcagagaggtgctgcgcctcagcaagctggtg
gtggacagccacgtgcagtacaggctggggaacgtcgacgcattccagttgtccgatggg
ctgcagtacatcttcgcccatgtgggtcagctgacgggcatgtaccgctacaagtacaag
ctgatgagacagatccgcatgtgcaaagatctgaagcatctcatctactaccggttcaac
accggtcctgtgggcaaaggtccaggttgtggcttctgggctcccggctggagagtgtgg
ctgttcttcatgaggggaatcaccccactgttggagaggtggctgggaaatctgctcgcc
aggcagtttgaaggacgtcactccaagggcgtggccaagactgtcaccaaacagcgcgtg
gagtctcacttcgacctggagttgcgtgccgccgtgatgcacgacatcctggacatgatg
cccgagggcatcaaacagaacaaggccagaaccatcctgcagcacctcagtgagtcttgg
aggtgctggaaggccaacatcccatggaaggtgccgggcctgcccactcccatcgagaac
atgatcctgcgctacgtgaaggctaaagccgactggtggaccaacaccgcccactacaac
cgcgagcgaatccgccgcggagccaccgtggacaagacggtgtgcaagaagaacctgggc
aggctgactcgtctgtacctgaaggcggagcaggagaggcagcacaactacctgaaggac
ggcccctacatcacagctgaagaggcggtggccatttacaccaccaccgttcactggctg
gagagtcggcggttctcgcccatcccgttccccccgctgtcctacaaacacgacaccaag
ctgctcatcctggccttggagaggctcaaggaggcgtacagtgtgaagtctcgtctgaac
cagagtcagagggaggagctcgggctgattgagcaggcgtacgacaatcctcacgaggcc
ttgtccaggatcaaacgtcacctgctcacccagagagccttcaaagaggtgggcatcgag
ttcatggacctgtacagtcacctggtgccggtgtacgacgtggagcccctcgagaagatc
accgacgcctacctcgaccagtacctgtggtacgaggcggacaagagacgcctcttcccg
ccctggatcaaaccggccgacactgaaccgccaccgctcctggtgtacaagtggtgccaa
ggcatcaacaacttgcaggacgtgtgggagaccacggagggcgagtgcaacgtgatgctg
gagtcccgctacgagaagatgtacgagaagatcgatctgacgctgctcaacaggctgctg
cgcctcatcgtcgaccacaacatcgccgattacatgacggccaagaacaacgtggtcatc
aactacaaggatatgaaccacaccaactcctacggcatcatcagggggctccagttcgcc
tcgttcatcgtgcagtactacggcctggtgatggacctgctggtgctgggcctgcaccgc
gccagcgagatggccggcccgcctcagatgcccaacgatttcctcagtttccaagacacg
cccacggagagcgcccacccaatcagactgtactgccgctacatcgaccgcatccacatc
ttcttcaggttcactgctgatgaggccagggatctgattcagaggtacctgacggagcac
cccgaccccaacaacgagaacatagtgggttacaacaacaagaagtgctggccccgcgat
gcccgcatgaggctgatgaagcacgacgtcaacctgggacgtgccgtgttctgggacatc
aagaaccgcctgcccagatcggtgaccaccgtccagtgggagaacagctttgtgtccgtg
tacagcaaagacaaccccaacctgctcttcaacatgtgcggcttcgagtgccgcatcttg
cccaagtgccgcaccagctacgaggagttcacgcacaaggacggtgtgtggaacctccaa
aacgaggtgaccaaagagaggacggcgcagtgtttcctgcgtgtggatgatgaatcgatg
cagcgcttccacaaccgagtgcgtcagatcctgatggcctccggatccaccacgttcacc
aagattgtgaacaaatggaacacggccctcatcggtctgatgacgtacttccgcgaggcc
gtggtcaacacccaggagctcctggacctgctggtgaagtgcgagaacaagatccagacg
cgtatcaagatcggcctgaactccaaaatgccgagccgcttcccccccgtcgtcttctac
acgcccaaagagttgggcggcctcggcatgctgtcgatgggccacgtgctcattccacag
tcggaccttcggtggtccaagcagacggatgtgggaatcacccatttcaggtcgggaatg
agccacgaggaagaccagctgattcccaacttgtatcgttacattcagccgtgggagagc
gagttcatcgactcccagagggtctgggccgagtacgccctcaagagacaggaggccatc
gcccagaacaggcgtctgaccctggaagatttggaggactcttgggacagaggaatcccc
cgcatcaacactctgttccagaaggacagacacacactggcctacgacaaaggctggaga
gtcaggaccgatttcaagcagtaccaggtgctgaagcagaatccgttctggtggactcac
cagaggcacgacggcaaactgtggaacctgaacaactaccgcacggacatgatccaggcg
ctgggtggcgtggagggcatcctggagcacacgctcttcaaaggcacatactttcccacc
tgggagggtctcttctgggaaaaggccagtggctttgaggagtccatgaaatggaagaag
ctgaccaatgcccagcgctctggtctgaaccaaatccccaaccgtcgcttcaccctctgg
tggtcgcccaccatcaacagagccaacgtgtatgtgggtttccaggtgcaactcgacttg
acgggaatcttcatgcacggcaagatcccgacgctgaagatctccctcatccagatcttc
agggctcacttgtggcagaagattcacgagagcgtcgttatggatctctgtcaggtgttt
gatcaagagctggatgctctggagattgagaccgtgcagaaggaaaccatccaccccagg
aagtcgtacaagatgaactcgtcctgtgcagacatcctcctctttgcgtcgtacaagtgg
aacgtctctcggccgtctctgctggccgactcaaaagacgtgatggacagcaccaccaca
cagaagtactggatcgacatccagctgcgttggggcgactacgactcccacgacatcgag
cgctacgccagggccaagttcctggactacaccaccgacaacatgagcatctacccctcc
cccaccggggtgctcattgccatcgacttggcttacaacctccacagtgcctacggtaac
tggttccccgggagcaagcctctgatccagcaggccatggccaagatcatgaaggccaac
cccgccctgtacgtgctcagggagcgcatccgcaaaggtctgcagctgtactcctccgag
cccactgagccctacctgtcctcccagaactacggagaactcttctccaaccagatcatt
tggttcgtagacgacaccaacgtgtacagagtcaccatccacaagacctttgagggcaac
ttgaccacgaagcccatcaatggagccattttcatcttcaaccccaggaccggtcagctt
ttcctgaagatcattcacacgtctgtgtgggccggacagaaacgtctgggacagctggcc
aagtggaagacggctgaagaagtggccgctctgatccgctccctccccgtggaggagcag
cccaaacagatcattgtgaccaggaagggcatgctggaccccctggaggtccacttgctc
gacttccccaacatcgtgatcaaaggctccgagctgcagctgcccttccaggcctgcctg
aaagtggagaagttcggagacctgatcctgaaggccacggagcctcagatggtgctgttc
aacctctacgacgactggctcaagaccatctcgtcgtacactgccttctcccgtctcatc
ctgatcctccgggcgctccacgtcaacaacgaccgcgccaaagtgatcctgaaacccgac
aagaccacgatcaccgagccgcatcacatctggcccacgctcaccgacgaggagtggatc
aaggtggaggtgcaactcaaagacctcatcctggccgattacggcaagaagaacaatgtg
aacgtggcttcgctgacccagtctgagatccgtgacatcatcctggggatggagatctcc
gccccgtcgcagcagcgccagcagatcgccgagatcgagaagcagaccaaagagcagtcg
cagctcaccgccacgcagacacgcaccgtcaacaagcacggcgacgagatcatcacctcc
actacctccaactacgagacccagaccttctcctccaagaccgagtggcgagtccgagcc
atatcggctgccaacctccacctgcgaaccaaccacatctacgtgtcctccgacgacatc
aaggagacgggctacacctacattctgcccaagaacgtcctcaagaagttcatctgcatc
tcggatctgcgagcacagattgcaggctacctgtatggcaccagtccccccgacaacccc
caggtgaaggagatccgttgcattgtcatggtgccgcagtgggggacgcaccagacggtg
cacctgcccaaccagctgcctggtcacgaatacctgaaagaaatggagcccctcggctgg
atccacacgcagcccaacgagtcgccccagctgtccccgcaggacgtcaccacccacgcc
aaggtcatggccgacaacccttcatgggacggagagaagaccatcatcattacctgcagc
ttcaccccaggctcgtgcaccctgacggcctacaagatgacgcccagtggttacgagtgg
ggccggcagaacaccgacaagggcaacaaccccaaaggctacctgccgtctcactacgaa
agagtgcagatgctgctctccgatcgcttcctgggcttcttcatggtgcctgggcaggtg
tcctggaactacaacttcatgggcgttcgccacgaccccaacatgaagtacgacctgcag
ctggccaacccgaaggagttctaccatgaagtccaccggccctcgcacttcctaaacttc
gcctcgctgcaggagggcgaggtctataacgcggaccgcgaggacatgtacgcctga
DBGET
integrated database retrieval system
