Pseudoliparis swirei (Mariana hadal snailfish): 130210373
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Entry
130210373 CDS
T09868
Symbol
dscamb
Name
(RefSeq) cell adhesion molecule DSCAM isoform X1
KO
K06767
Down syndrome cell adhesion molecule
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130210373 (dscamb)
Cell adhesion molecules [BR:
pswi04515
]
Immunoglobulin superfamily
DSCAM family
130210373 (dscamb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
fn3
ig
Ig_DSCAM-DSCAML_C
V-set
C2-set_2
Ig_5
Pur_ac_phosph_N
V-set_CD47
C1-set
Sp38
C2-set_3
fn3_2
ARM_TT21_4th
Motif
Other DBs
NCBI-GeneID:
130210373
NCBI-ProteinID:
XP_056296555
LinkDB
All DBs
Position
20:complement(7356218..7468045)
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AA seq
2074 aa
AA seq
DB search
MWILAFIFFQSILNVFSEDLHSSLYFVNASLQEVVFASTTGISVPCPAGGVSPASLRWYL
ATGEEIYDVPGIRHVHPNGTLQIFNFLPSSFSKLIHDNTYYCTAENPSGKIRSQDVHIKA
VSREPYTVRVADQKAMRGSVAVFKCIIPASVEAYVTVVSWEKDTVSLHSGQRYLITSTGA
LYILDVLPEDGLNNYRCTTRHRYTGETRQSNSARLIVTDPTNAEPDILDGFDQREVMIDH
RVELPCKSSGYPTPKYRWLKDNSPLEPDSRFRQTTTGLLIESTQPSDSGTYVCEVWNIYG
NAEVMGRLYVKQPLKAVVSPRKVKGSVGSKVSLSCSVSGSDEYELSWYRNGEIIYPGNNV
RFTGLNRENLIMEGMSKSDGGAYQCFARKSKMSAQDFVQVILEDGTPKILSSFSEKVVNP
NEPVFLLCNVKGTPPPRCSWSLDEDPVIKDTHHHLGHYETHEGHVVSQLNVTHTQVQDGG
VYRCTCSNSAGVMYHQARINVRGRASIRPMKNITAIAGRDAFVHCRVIGYPYYSIKWYKN
SALLPFNHRQRAFENNGTLKLTNVQQVDAGEYTCKVMVQPNKMDSQSVHLRVRVPPYIQP
FEFQRFTIGQRVFIPCVVMSGDRPLDITWQKDGRPIPISLGVTVDNIDFTSSLRISNLTP
DHNGNYTCIARNEAAAVEHQSQLIVRVPPQFVVQPEDQDGIYGKTVTLNCSAEGYPPPTI
VWEHSKGAGVPQFQPIQLNTGSRVKLLSNGSLLIKHVLEDDSGFYLCKVSNDVGADVSKS
MYLTVKIPAMITSYPNTTLATQGEEKKMSCIAHGEKPIMVRWEKEERIINPETSRYVVTV
KEVTDEVISTLMIMPTVREDSGFFSCHAINSFGEDRGIIQLTVQEAPDPPEVEIREVKDR
TIALRWTMGFDGNSPITGYDIECKNKSASWLSAQVTKDVSPQLNQATIIDLHPSSTYNIR
LVAKNIIGNSNPSNELTITTDEAAPDGPPQDVILEPTSPQSIKVSWRSPQKHLQNGVIRG
FQVGYREYSPGGSHQFTIISLDITGDITESILLDDLKKFTQYSVVVQAANRAGTGPSSQQ
VVIKTLEDVPSRPPENVLAVAKSPEVISLSWMPLPREALNGNLQGYRVIYWANLPDGELG
EIRNVTTNQPSLELDGLEKYTNYSIQVLAFTNAGDGVRSEQIYVRTKEDVPGPPAGVKAA
ASSSSVVFVSWLPPLKLNGIIRKYIVFCSNLHPMVFVMSEFEASPDAYFYRIPNLARNRQ
YNIWVVAVTAAGHGNNSEKITVEPLAKAPARILTFNGTVTTPWMKDIVLPCKAVGDPPPT
IKWLKGNTNGTPTTVLVDGRRSVHGNGSFIIRTVKAEDSGNYSCVASNNWGSDEITLNLQ
VQVPPDQPRLTVTKTTTTSITLSWIPGDNGGSSIRGYILQYSEDNSEQWGSFPISPSERS
YRLENLKCGTWYKFTLTAQNAVGPGRISEIIEAKTHGKEPQFAKEHELFTSINSTRARLN
LVGWNNGGCPITSFILEYRAVDSATWTTAQRTSLTKSYILYDLQEATWYELQMKVTNSAG
SAEKRITFATLNADGSTIPPLLKSGDPISDNMSGSGGLKMVVTITSVLVVAVLVFIMLMV
LKRRRREQRLKRLRDAKSLAEMLMSKNTRTPDTVNKQQQTLRMHIDIPRAQLLIEERDTM
ETIDDRSTVLLTDNDFGDTNKQKSSTVTHTVHYQSLSQATGPLVDVSDARPGTSESHHHP
TARRTAKAGPVAARSRYASQWTLNRPHPTSSSHTLTTDWRLPTPRATGSVDKESDSYSVS
PSQDTDRARSSMVSTESASSTYEELARAYEHAKMEEQLRHAKFTITECFISDTSSEQMTA
GTNDYTDSVTSSTPSESGICRFTASPPKPQDVSRVMTMAVPKAHRPGGELVHLPPYLRMD
FLLNRGVPLAARGGGVSSSSGSGSSSSGGGGGASGVGATGETRGGGGGAMGQTCLEPQRS
RTLKRPPPMEPTPMEVPSPREVQQWQPGTASTLPHRDIRERGEARGEVRAEASSSGDLGQ
AQAAKLSTSQESLLDSRGHLKQSNNPYAKSYTLV
NT seq
6225 nt
NT seq
+upstream
nt +downstream
nt
atgtggatattggcttttatcttcttccagagcatcttgaatgttttcagtgaggaccta
cattccagcttatattttgtcaatgcatctttgcaagaggtagtatttgccagcaccaca
gggatctctgtgccctgtcctgctggtggcgtgtctcctgcctcgctgcgctggtatctg
gcgaccggcgaggagatctacgatgtcccgggcatccgccatgtccaccccaatggaacc
ctccagatctttaacttcctgccgtccagcttcagcaagctgatccacgacaacacatac
tactgcactgccgagaacccctctggcaagattaggagtcaggatgtccacatcaaagct
gtttcacgggaaccctacacagtcagagtggccgaccagaaggctatgagaggcagtgta
gccgtcttcaagtgcattatcccggcttctgttgaggcctacgtcactgttgtatcatgg
gagaaagacacagtttcactccactcaggacaaagatatctcatcacatccacgggagcc
ttgtatattctggacgtcctgcctgaggatgggctgaataactatcgctgcaccacacgc
caccgctacaccggcgagactcgtcagagcaacagcgcgcggctcatcgtgacagacccc
accaatgccgagccagacatcttggatggctttgaccagcgggaggtgatgatcgatcat
cgggtggagctgccctgtaagagctcaggctacccaacgcccaaataccgctggctgaag
gacaacagccctttggagcccgacagtcgcttccgccaaaccaccacggggttgctgata
gagagcacacagcccagtgactctgggacgtatgtttgtgaagtgtggaacatttatggc
aacgcggaggtgatggggcgcctctatgtcaaacagcccttgaaggccgtggtcagccct
cggaaggtgaaaggcagtgtggggagcaaagtgtctctgtcttgtagcgtgagcggctcc
gacgagtatgagctgtcatggtaccgcaatggagagatcatctacccgggcaacaatgtc
cgtttcaccgggctgaaccgggagaaccttatcatggaggggatgtcgaagagcgacggc
ggagcctatcagtgcttcgccaggaagagcaagatgtcggcacaggactttgtgcaagtc
atcctcgaagatggtactccgaagatcctgtcctccttcagtgagaaggtggtgaacccg
aacgagcccgtcttcctgctctgcaatgtcaagggcacgccgccccccagatgctcctgg
tcgctggacgaggaccccgtcatcaaagacacccaccaccacctgggccactacgagacc
cacgagggccatgtggtcagccagctgaacgtcacacacacccaggtgcaggacggcggg
gtgtaccggtgcacgtgcagcaactcggccggggtcatgtaccaccaggctcgaataaac
gtaagaggccgcgccagcattcgtccaatgaaaaacatcaccgcgattgctggacgggat
gcgttcgttcactgccgtgtgattggctacccttactactccataaagtggtacaaaaac
tcggcgctgctaccgttcaatcatcgacagcgagcatttgagaacaacggcacactgaag
ctgaccaacgtgcagcaggtggacgctggcgagtacacctgcaaggtgatggtccaaccc
aacaagatggactcccagagtgtccatctacgtgtgagagtgcctccctacattcagccc
tttgagttccagcgtttcaccatcggccaacgtgtcttcatcccctgcgtggtcatgtcg
ggcgaccgcccgctggacatcacctggcagaaagatggacggccaattcccatcagcctg
ggtgtgactgtggacaacatcgacttcaccagctcattgagaatctccaacctcacgccc
gaccacaatggcaactacacctgcatcgcccgcaatgaggctgctgcagtggagcatcag
agtcagctcattgttagagttcctcctcagtttgtggttcagcctgaggatcaagatggg
atctacgggaaaacggtgactcttaactgctcggctgaaggctaccctccacccaccatc
gtatgggaacactccaaaggtgccggcgttccccagtttcagcccatccagctgaacacc
ggctcccgtgtgaagctgctgagcaacggttcgcttcttatcaaacacgtgctggaggac
gacagcggcttctacctgtgtaaggtcagcaacgacgtgggagctgatgtcagcaagtcc
atgtacctcaccgtcaaaatcccagcgatgatcacctcctaccccaacaccacgctggcc
acgcagggcgaggagaagaagatgagctgcattgctcacggggagaaacccatcatggtg
cgttgggagaaagaagaacgcatcatcaacccggagaccagccgatacgtggtcaccgtc
aaagaggtgaccgacgaggtcatctctacgcttatgattatgccaactgttcgtgaggac
tcaggtttcttctcctgtcatgccatcaactccttcggtgaggaccgaggcatcatacag
ctgacagtgcaagaagcgcccgaccctccagaggtggagatccgcgaggtaaaagatcgg
accatagctctccgctggaccatgggttttgatggcaacagccccatcacaggatatgat
attgaatgcaagaacaaatcagcgtcatggctatcagcccaggtaaccaaagatgtgtca
ccgcagctcaaccaggccacgattattgacctgcacccttcttccacttacaacatccgc
ctggtcgccaagaacatcatcggcaacagcaaccctagcaacgagctcaccatcaccacc
gatgaagcagctcctgacggcccaccacaggatgtcattttggagcccacctccccacag
agcatcaaagtttcctggaggtctccccagaagcacctgcagaacggagtgatccgcggc
ttccaggtgggctacagggagtacagccccggcggcagccaccagttcaccatcatcagc
ctggacatcacaggagacatcacagagagcatcttgctggacgacctgaagaagttcact
cagtacagcgtggtggtgcaggctgccaatagggctggcaccgggccttcttcacagcaa
gtcgtcatcaaaaccctggaggatgtgccgtctcggcctcctgaaaacgtcttggctgtg
gcaaagtccccggaggtgatctcgctctcctggatgccgctaccccgagaggctctcaat
ggaaacctgcagggatacagagtcatctactgggccaacctgcctgacggagaactggga
gaaatcaggaatgtgaccaccaatcagccgtctctggagctggacggattggagaagtac
accaactacagcatccaggtcttagccttcaccaacgctggagatggtgtccgcagtgaa
cagatctacgtccgcactaaagaggatgttcctggtcctccagcgggggttaaagctgca
gcctccagcagctctgtggtgtttgtctcctggctccctcccctcaaactcaacggcatc
atcaggaaatacatcgtcttctgctctaacctgcatcccatggtattcgtgatgagcgag
tttgaggcgtctccagatgcttatttctacaggatccccaatctggctcgaaacaggcag
tacaatatctgggtggtggctgtgacggctgctggccacggcaacaacagtgagaagatc
acagtggagcctctggctaaagctccagccaggattttgaccttcaatgggacagtgacc
actccctggatgaaggacattgttttaccatgcaaggctgtcggagaccctcctcccacc
attaagtggctcaagggaaacaccaatggaactcccacaactgtccttgtggatggtcgt
cgtagtgtccatggcaacggcagcttcatcatccgtacggtgaaagcagaggattctggg
aactacagctgtgtggccagcaacaactggggttcagatgagatcacactcaacctgcag
gtccaagtccctcctgatcagccgcgccttacagttaccaagactaccaccacatcaatc
acattgtcatggatacctggagacaacggagggagctccatcagaggttacatcctgcag
tactcagaggacaacagtgagcagtggggcagttttcccatcagccccagtgaacgctcg
taccgtctggagaacctgaagtgcggcacctggtacaaattcaccctaacggcccagaat
gcagtggggccagggcgcatcagtgagatcattgaagctaagacccatgggaaagagccg
cagtttgccaaagaacatgaactcttcaccagcattaactccaccagggccaggctcaac
ctggttggctggaacaacggcggctgtccaatcacttccttcatcctggagtaccgagca
gtggactcggccacctggaccactgcccagcgcacatcgctgaccaagagctacatcctg
tatgacttgcaggaggcgacctggtacgaactgcagatgaaggtcaccaacagcgccggc
tcagcagaaaagaggatcaccttcgctactctcaatgctgacggaagtaccatccctccc
ctgctgaaatcaggtgatcccatctccgacaacatgtccggcagcggaggtctgaagatg
gtggtgaccatcacctctgtcctcgtggtggccgtgctggtctttatcatgctcatggtg
ctaaagaggaggcgcagggagcagaggctcaagagactcagagatgccaaaagcctggca
gaaatgctgatgagtaagaacacacggactccagacacagtgaacaagcagcagcagaca
ctaagaatgcacatcgacatccccagagcccagctccttatcgaggagagggacaccatg
gagacaatcgatgacaggtccaccgtcctgttgacagacaacgactttggggatacaaat
aagcaaaagtcctccacagtgacccacacagtccactaccagtctctgtcccaggccact
ggaccactggttgacgtgtccgatgccaggcctggaaccagtgagtcccaccaccatccc
actgccagacgcactgccaaagctggtcctgtcgcggcacggagccgctacgccagccag
tggaccctgaaccggccgcaccccaccagctcctcacacaccctcaccactgactggagg
ttgcctacgccacgcgccaccggatctgtggacaaggagagcgacagctacagtgtcagc
ccctcacaggacacagatcgggcacggagcagcatggtctcaactgagagcgcgtcctcc
acctacgaggagttggccagagcctacgagcacgccaagatggaagagcagctccgccac
gccaagttcaccatcaccgagtgcttcatatccgacacctcatccgaacagatgacagcc
gggaccaacgactataccgacagcgtgacctccagcacgccgtctgagtcgggcatctgc
cgctttaccgcttcaccgcccaaacctcaggatgtcagccgggtcatgaccatggccgtg
cccaaggcacacagacctggaggagagctggtccacttgccgccttaccttcgtatggac
ttcctgttgaatcgtggcgtgccactggcagccagaggtggaggggtcagcagcagcagt
ggaagcggcagcagcagcagtggaggaggaggaggagcaagtggagttggtgctacaggg
gagacaagaggaggtggaggaggagcaatgggccagacctgcttggaaccgcagcggagc
cgtaccctgaagaggcctccaccaatggaacccacccccatggaagtgccgtcgcccagg
gaggtgcagcagtggcagccaggtactgcctccaccctaccccacagggatatccgggag
aggggagaggcccggggtgaggtccgggcagaggcctcctcctcgggagacctaggtcaa
gcacaggctgccaagctcagcacttcccaggagtccctgctggactccagaggacacctg
aaacagagcaacaacccctatgccaagtcctacactctggtataa
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