KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130210389
Entry
130210389         CDS       T09868                                 
Symbol
pnkp
Name
(RefSeq) bifunctional polynucleotide phosphatase/kinase
  KO
K08073  bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    130210389 (pnkp)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:pswi01009]
    130210389 (pnkp)
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pswi03400]
    130210389 (pnkp)
Enzymes [BR:pswi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     130210389 (pnkp)
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.32  polynucleotide 3'-phosphatase
     130210389 (pnkp)
Protein phosphatases and associated proteins [BR:pswi01009]
 HAD phosphatases
  Other HAD phosphatases
   130210389 (pnkp)
DNA repair and recombination proteins [BR:pswi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     130210389 (pnkp)
SSDB
Motif
Pfam: PNK3P AAA_33 FHA_2
Other DBs
NCBI-GeneID: 130210389
NCBI-ProteinID: XP_056296598
LinkDB
Position
20:4000702..4013178
AA seq 597 aa
MSCSLVGCGARVPLQDGRAAVLGRGPDTGVTDKKCSRHQVKVVACYADQDVVVTQLGPNP
SFLDGEKLGRNQSGKLTHGGTLFLVGQCHPFKLHYSPSSNGATPKGLKATDKTRGGRNGK
DKEAPKRSLKDFFSTSPMKSSKRQLSPEGGHPEVKRQKRDEGASDGRVNDEDEEERMAEE
KLRQLREWSEKLSAERPSGAQPSSSSPSSSSSKECLKSSWQQVGSLMLYTAAGVRGSEKI
AGFDIDGCIITTKSGKVFPTAPDDWKILFFEIQPSLASLLKRGYKVVFFTNQMGIARGKL
KPEVFKSKVEDILAALQLPVQVFVSTSPGIYRKPVMGMWNHLCEKANDGVAVDKTQTFYV
GDAAGRPENWAPGKKKKDFSCSDRLFALNIGVQFHTPEEYFLGWKSAPYSMPSFDPRKLD
STAALYDPPGAALTAGATEVIVAVGFPASGKSTFFHAHVVPKGYAYVNRDTLGSWQSCVT
ACERALKEGRSVAVDNTNPEPEARKRYVDVAKAAGVPCRCFHFSASLEEAKHNNRFREMA
PSDTKHAKVNDMLFHSYKKHFVAPALTEGFSEILQIHFVPNFKDSQSEILFRQFSEG
NT seq 1794 nt   +upstreamnt  +downstreamnt
atgtcgtgttcgctggttggctgtggagcgcgggtccctctgcaggacggccgagccgcg
gttctgggccgggggccggacaccggagtcaccgacaagaagtgctccaggcaccaggtg
aaggtggtggcgtgctatgcagaccaggatgttgttgttactcagcttggtcctaatccc
agtttcctggacggtgagaaactgggccgcaaccagtccggtaaactcacccacggtggc
accctcttcctggttggccagtgccacccttttaaactgcactactccccgagctccaac
ggcgccacaccgaaaggcctaaaagccaccgacaagacgagaggcgggaggaacgggaaa
gacaaagaggctcccaagcgcagtttaaaggatttcttttctacctctcccatgaagtca
tctaaaagacagctgagtccggagggggggcaccctgaggtgaagcgccagaaacgagac
gagggggcctcggatggacgggtgaatgacgaagacgaggaggagaggatggccgaagag
aagctcaggcagctgagggagtggtcagagaagttatcggcggagaggccgagcggcgcc
cagccttcgtcctcttcgccctcgtcatcctcctcgaaggaatgcctgaagagcagctgg
cagcaggtcggcagcctgatgctctacacggccgccggcgtcagagggagcgagaagatt
gcggggttcgacatcgacggctgcatcatcaccaccaagtctgggaaagtcttccccacc
gcgccggacgactggaagatcctgttcttcgagattcagcccagtctggccagcttgctc
aagagaggatacaaggtggtgttcttcaccaaccagatgggcatcgccagagggaaactg
aagccggaggtcttcaagtccaaggtggaggacatcctcgccgcgctgcagctgcccgtg
caggtgttcgtctccaccagtcctggaatctacaggaagccggtgatgggcatgtggaac
cacctgtgtgagaaggcaaacgacggcgtggccgttgacaagacgcagaccttctatgtc
ggagatgctgccggaaggccggagaactgggctccaggaaagaagaagaaggatttctcc
tgcagtgacagactgtttgctctgaacatcggggtgcagttccacaccccggaggagtac
ttcctgggctggaagagcgccccctacagcatgcctagctttgaccccaggaagctcgac
tccacggccgcgctctacgaccctccgggcgccgcgctcaccgccggcgccaccgaagtc
atcgtggccgtcggtttccctgcgtccgggaaatccaccttcttccacgcccacgtcgtc
cccaaaggctacgcctacgtcaacagggacacactggggtcgtggcagagctgcgtgacg
gcgtgcgagcgcgccctgaaggaaggccgcagcgtcgccgtggacaacaccaacccagaa
cccgaggcccgcaaacggtatgtggacgtggcgaaggcggcaggagtgccgtgtcgctgt
ttccacttctcagcctccctggaggaagccaagcacaacaaccggttccgtgagatggct
ccatcggacaccaaacacgccaaggtcaacgacatgttgttccacagctacaagaaacac
ttcgtggctccggcgctcacggagggattctccgagatccttcagatccactttgtcccg
aacttcaaggacagccaatcagaaatcttattccggcagttttctgagggctga

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