Pseudoliparis swirei (Mariana hadal snailfish): 130210458
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Entry
130210458 CDS
T09868
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04142
Lysosome
pswi04144
Endocytosis
pswi05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
130210458
04142 Lysosome
130210458
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
130210458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130210458
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pswi04147
]
130210458
Membrane trafficking [BR:
pswi04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
130210458
Exosome [BR:
pswi04147
]
Exosomal proteins
Proteins found in most exosomes
130210458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
capSnatchArena
Motif
Other DBs
NCBI-GeneID:
130210458
NCBI-ProteinID:
XP_056296754
LinkDB
All DBs
Position
20:7076961..7101519
Genome browser
AA seq
1684 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNN
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQDE
EPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPMEGPLQTRLLEMNLVHAPQVADAIL
GNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLTELFESFKSFEGLFYFLGSIVN
FSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNSLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLILVVRGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPFY
DSRVVGKYCEKRDPHLACVAYERGQCDQELIHVCNENSLFKSLSRYLVRRKNPELWASVL
LETNNYRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYMEV
GQAAAQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDDKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWGELVFLYEKYEEYDNAIITMMN
HPSDAWKEGQFKDIVTKVANVELYYKAVQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFFS
KVKQLPLVKPYLRSVQTHNNKSVNEALNNLFIVEEDYAALRASIDAYDNFDNISLAQGLE
KHDLIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDIELAEELLAWFLNE
DKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDAIKEKVDKL
EASESLRKQEEQETESQPIVYGASQLMLTAGPNVAVPPQQPYSYGYPAAPGYSQPPQPSF
GYGM
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagatcctacctatccgctttcaggagcacctgcagctccagaacctgggcatc
aacccagccaacattggattcagcactctaaccatggagtccgacaagttcatctgcata
agagagaaagtgggggagcaggcccaggtcgtcatcatcgatatggccgaccccaacaat
ccaatccgcaggcctatctctgcagacagcgccatcatgaaccctgccagcaaagttatt
gcccttaaagcggcaaagaccctgcagatcttcaacatcgagatgaagagcaagatgaag
gctcacacaatgactgatgacgtgaccttctggaagtggatctccctcaacaccgttgcc
ttggtcacagacaatgccgtctaccattggagcatggagggtgactctcagccaatcaaa
gtctttgaccgtcactccagcctggcaggctgccagatcataaactaccgcactgacgcc
aaacagaagtggttgctgctcattggtatttcagcacagcaaaaccgcgtcgtcggagcc
atgcagctgtactcggtggacaggaaggtgtctcagcccattgagggacatgccgctggc
tttgcacagttcaagatggagggcaacactgaagagtcaaccctgttctgctttgctgtg
cgaggacaggcgggaggaaagctgcatatcattgaagtggggactccgccgactgggaac
cagccatttccaaagaaagctgtggatgttttctttcccccagaagctcaaaatgacttc
cctgttgctatgcagatcagttccaagcaagatgtagtctttctcatcaccaaatatggc
tacatccacctgtatgaccttgagactggaacttgtatctacatgaacaggatcagcggg
gagaccatttttgtcactgcaccccatgagcccactgctggtatcattggagtcaacagg
aaaggacaggtgttgtccgtgtgcgtggaggaggaaaacatcattccctacatcaccaat
gtgctccagaacccagacctggccctccgcatggcggtccgcaacaaccttgccggtgct
gaggagctgtttgcccgcaagttcaacaccctctttgcagcgggaaactattccgaggct
gccaaggtggcggccaatgcacccaagggtatcctgcggaccccagacaccatccgtcgc
ttccagagtgttcctgcccaaccaggccagacgtctcccttgctccaatactttggcatc
ttgctggaccaaggccaactgaacaaatttgagtctctggagctgtgcaggcccgtcctc
caacagggccgcaagcaactcctagagaaatggttgaaagaggacaagctggagtgctct
gaggagcttggagacttggtgaagtctgtagatcctactcttgccctcagtgtctacctc
agagccaacgtccccaataaggtcattcagtgctttgcagagactggacaattccagaag
atcgtcctctatgccaagaaggtgggctatactccagactggatctttctgcttaggaat
gtaatgcggatcagcccagaacagggccttcagttctctcagatgctggttcaggatgaa
gaaccacttgcggacattacacagattgttgatgtgttcatggagtacaacctgatccag
cagtgcacatccttcctcctagatgccctcaagaataacagacccatggagggaccactg
cagacacgcctgctggagatgaatttggtgcacgcaccacaggttgcagatgccatcctg
ggcaatcagatgttcacccactatgatcgtgctcatgtggcacagctgtgtgagaaggcc
ggtctcctgcagagggcgctggagcattatactgacctgtatgatattaagcgtgctgtg
gtgcacacacaccttcttaacccagagtggttggtgaatttctttggctccttgtcggtg
gaagactctctggagtgtctgagggccatgctgtctgctaacatccgccagaacctgcag
atctgtgtgcaggtcgcctccaagtatcatgaacagctctccactcagtccctcactgaa
ctgtttgagtcattcaagagctttgagggtttgttctatttcttgggttctattgtgaac
ttcagccaggatccagaggtgcatttcaaatatatccaggccgcctgcaagacaggccag
atcaaagaggtggagaggatctgtcgagaaagtaactgctacgaccctgaacgtgtgaag
aacttcctcaaggaagccaagctgactgaccagctgcctttgatcattgtgtgtgaccgc
tttgattttgtccatgatctggtgctgtacctgtaccgcaacagcctgcagaaatacatt
gagatctacgtgcagaaggtgaacccgagccgtctgccggtagtcattggtgggttactg
gatgtggattgtgctgaggatgtgattaagaacctgattctggtggttagagggcagttc
tccacagatgaactggtggctgaagtggagaaaagaaatcgactgaagctgctgctgcct
tggttagaggctcgtattcatgaaggatgtgaggagcctgctacccacaatgccctggcc
aagatctacatcgacagcaacaacaacccagagcgattcctgagggagaaccccttctat
gacagccgtgtggtgggcaagtactgtgagaaaagagacccccacctggcctgcgtggcc
tatgaaagaggacagtgtgaccaggaactgattcatgtgtgcaatgagaactcgctgttc
aagagtctgtcccgctaccttgtgcgtcgcaagaaccctgagctgtgggcgagcgtgctg
ctggagaccaacaattacagaagacaactcattgaccaggtggtccagacagccttgtct
gagactcaggatccagaggaggtgtccgtcacagtcaaagccttcatgaccgctgacctt
cccaatgagctcatcgagcttctggagaagattgtcctggataactctgtctttagcgag
cacagaaacctccagaatctgctcatcctgacggccattaaagctgaccggactcgtgtc
atggagtacatcaaccgtctggacaactacgatgccccagacatcgcaaacatcgccatc
agcaatgagctctttgaggaggcctttgctattttcaaaaaatttgacgtcaacacctct
gctgtgcaggttctgattgagcacatcggtaacctggacagagcttatgagtttgctgag
cgctgcaatgagccaccggtgtggagtcagctggcgaaggcccagcttcagaagggcctc
gtcaaagaagccattgactcttacatcaaggctgatgacccctctgcgtacatggaggtg
ggacaagctgcagcccaaagtggaaattgggaggacctggtgaagtttctgcagatggcc
cgtaagaaggcccgtgagtcatacgtagaaacggagctgatctttgccctggccaagacc
aaccgcttggctgagctggaagagttcatcaatggacccaataatgctcacattcagcaa
gtgggtgatcgttgctatgacgacaagatgtacgacgcggccaaactgctttacaacaac
gtgtccaactttggccgtctggcctccacgctggtgcacctgggagagtaccaagcagct
gtggacggagctcgcaaggccaacagcactcgcacctggaaagaggtgtgctttgcgtgt
gtagatgggaaagagttccgtcttgcccaaatgtgtgggctgcacatcgtcgtccacgcc
gatgaactggaggaactcatcaactactaccaggaccgcggttactttgaggagctgatc
accatgctggaggccgccctgggactggagcgtgctcacatgggcatgttcaccgagctg
gccatcctctactccaaattcaagccccagaagatgagggagcacctggagctcttctgg
tcccgcgtcaacattccaaaggtcctcagggcagcagagcaggcccacctctggggagag
ctggtgttcctctacgaaaagtacgaggagtacgacaacgccatcatcaccatgatgaac
cacccatctgatgcctggaaggagggccagttcaaagacattgtcaccaaggtggccaat
gtggagttgtactacaaggccgttcagttttacctggagttcaaaccattgttactgaac
gacctgctcatcgtcctctctccaagacttgaccactcgcgcgctgtcaacttcttcagc
aaggtgaaacagctgcctctggttaagccttacctgaggtctgtccagactcacaacaac
aagtcggtcaatgaggcactgaacaacctcttcatcgtcgaggaagactatgcggcactg
cgagcttccatcgacgcctatgacaactttgacaacatctcactggcccagggcctggag
aagcacgacttgattgagttcaggaggattgccgcctacctcttcaagggcaacaaccgc
tggaaacagagtgtggagctctgcaagaaggacaagctctacaaggatgccatgcagtac
gcatcggagtccaaagacatcgagctggcagaggagcttctggcttggttcctgaatgag
gacaagaaggagtgttttgcggcctgcctattcacctgctacgacctgctgcggcccgac
gtggtgctggagaccgcctggcgacacaacatcatggacttctccatgccatacttcatc
caggtcatgagggagtatctctctaaggttgatgcgataaaggaaaaggtcgacaaactc
gaagcctccgagtccctgaggaaacaggaggagcaggagaccgagtctcaaccgattgtt
tacggcgcatcccagctgatgctcacggcagggcccaacgtggccgtgccccctcagcag
ccctacagctacggctaccccgcagcaccgggctacagccagcccccacagcccagcttc
ggttacggcatgtga
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integrated database retrieval system
