Pseudoliparis swirei (Mariana hadal snailfish): 130210550
Help
Entry
130210550 CDS
T09868
Symbol
hif1al
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04137
Mitophagy - animal
pswi04140
Autophagy - animal
pswi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130210550 (hif1al)
04137 Mitophagy - animal
130210550 (hif1al)
04148 Efferocytosis
130210550 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130210550 (hif1al)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
130210550 (hif1al)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_11
bHLH_HIF1A
PAS_3
HIF-1
PAS
PAS_4
PAS_9
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
130210550
NCBI-ProteinID:
XP_056296943
LinkDB
All DBs
Position
20:21147573..21162901
Genome browser
AA seq
697 aa
AA seq
DB search
MEEKDEAVVVKRGSSEQRKLRSRDAARCRRSQETEVFYDLASTLPLPRRVCTHLDKSAIM
RVALSFLRMHHLILQPGENQREKSEEKVEKLELDEEEDEEEEEDPMDSFYPQALAGFIMV
MTEEGDMIYLTENVSIHIGIPQLELLGQSIYDFVHPCDQEELRDLLIPRPGSRKKPLAEQ
PSERNFFLRMKSTLTSRGRTVNIKSATWKVLHCTGHIRQVGSASPPMGGAMTLLCEPIPH
PSSVEFPLDTHTFLTRHNMDLHFTHCEGRVTELVGYKPEDLIGRSAYEFHHALDSDHVKK
SMHTLLSKGQVSTRHYRFLANSGGFVWAETQATVLYSSRTSQPEAVVCLNYILSGVEEPD
LVFSVEQTRCEQLPEAAEPQAPQLATKDCETSDISNSNISNSDPDGERLVGSSPTEDAGL
NPSSATELFFKLKELPEELFQLAPEAGSTIFPLTEDFVELSFAHLPSPSSLPDHPQELCS
PQLRQLLSPIFSLITPPLSLSSSSSSPASPPDDELRPCEEEVTDPRQVERFFAVWPEDGE
KKEEALKIEVMDLDMLAPYISMDDDFQLTILSSLPEEDDKTSSSEPSAVASAVSRKRAYN
PDEETLAELLIHDKRQKRDPSSIEEELLLDHGLLSCLEETDQSDLFMELGVAGRSQLLTD
RDPVLGGTQGLCDTGFLMGDIFAPRPLDLSPPHTPMT
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaaggatgaggccgtcgtggtcaaacgcggcagttcggagcagaggaagctg
cgttctcgtgatgcggcccgatgtaggcggagccaggagacagaggtgttctatgacctg
gccagcacgctgccgctcccccgtcgagtctgcacccacctggacaagtccgccatcatg
agagtcgccctcagcttcctgcggatgcaccacctaatccttcaacctggcgagaatcag
agagagaagtcagaggagaaggtggagaagctggagttggacgaggaagaggatgaagag
gaagaagaagatccaatggattctttctaccctcaagcgctggccggcttcatcatggtg
atgaccgaggagggagacatgatctacctgacggaaaacgtcagcatccacatcggcatc
ccacagctggagctgctgggtcagagtatctatgactttgttcacccctgtgatcaggag
gagctcagagacctgttgattccacgcccaggttcacgcaagaagccgctggcagagcag
ccgagcgagaggaacttcttcctgcggatgaagagcactctgaccagcagggggcgcacc
gtcaacatcaagtctgctacctggaaggttctccactgcacgggtcacatccgtcaggtg
ggctccgcctctcctcctatgggcggagcaatgactctgctgtgtgagcccatccctcac
ccgtccagcgtggagttccctctggacacgcacaccttcctcacccgccacaacatggac
ctgcacttcacacactgcgagggcagggtgacagagttggtgggatacaaacctgaagat
ctgattggccgctcagcttacgagtttcatcacgcccttgactctgatcacgtcaaaaag
agcatgcacacactgctgtccaaaggtcaggtgagcaccagacactaccgtttcctggcg
aacagcggcggctttgtgtgggcggagactcaggcgaccgtcctctacagcagcaggact
tcacagccggaggccgtcgtctgcctcaactatattctcagtggcgtggaggagccggac
ctcgtcttctccgtggagcagacccgctgtgaacagctgcctgaagcagccgagccccag
gcgccgcagctcgcgacgaaggattgtgagacttccgacatcagcaactccaacatcagc
aactccgacccggacggtgagcgcctcgttggctccagtccgactgaggacgcaggtttg
aatcccagcagtgcgacggagctctttttcaaactgaaggagttgccggaggagcttttt
cagttggctcccgaggccggaagtaccatcttcccgttgacggaagattttgttgagctg
tcgttcgcccatctgccgagtccgagctcgctgccggaccaccctcaggagttgtgcagt
ccgcagctgcgacagctcctctcacccatcttcagcctcatcactccacctttatcatta
tcatcatcatcatcatcaccggcctccccacctgatgatgagttgagaccctgtgaggag
gaggtgacggacccaaggcaggtggagaggttcttcgctgtttggcccgaggatggtgag
aagaaagaggaagcactgaagatagaggtgatggacctggacatgctggctccttacatc
tccatggacgacgacttccagctgaccatcctcagcagtctgcccgaggaagacgacaaa
acttcttcctccgagccgtcagctgtggcatctgcagtgagcaggaagcgggcttataac
ccggacgaggagacgctggccgagctgctgattcacgacaagagacagaaacgagatccg
tcctcaatagaagaggagcttcttcttgaccacggacttctgagctgtctggaggaaacc
gaccaatcagatttgttcatggagctgggtgttgcagggcggagtcagctgctcacagat
agagaccctgttttaggaggcacacagggactctgtgatactggatttctgatgggggac
atattcgcacctcgtccactggacctgtcgccgcctcatacgcccatgacttga
DBGET
integrated database retrieval system
