Pseudoliparis swirei (Mariana hadal snailfish): 130210577
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Entry
130210577 CDS
T09868
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130210577
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
130210577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
130210577
NCBI-ProteinID:
XP_056296980
LinkDB
All DBs
Position
20:complement(19307699..19327627)
Genome browser
AA seq
2118 aa
AA seq
DB search
MSSCFVPNGASLEDCHSNLFCLADLTGIKWRRFVWQGPTSSPILFPVTEEDPILCSFSRC
LTADVLSVWRRHQTPGRRELWLFWWGDDPSFAELIHNELSSEEDGEWESGLSYECRTLLF
KAIHNLLERCLMNRGFVRIGKWFVKPYQKEEKTINKSEHLSCAFTFFVHGDSNVCTSVEI
AQHQPLQRLNEEDISLAQQNSSPLQVILSPYGLNGSLTGQTFKMSDHPTQKLIEEWRQFY
PISPNPKQVPEDKMEDPDWEDDSMAAVEVLVAGVRMVYPSCLVLLPLSDIPAVVPQGSVN
TSGSLCGAPQGQASHRDPAMSSVTLTPPTSPEEAQTDYQPSQRWLKLSSASDGNSSNNTL
HGGKIPRRLASQMVESVWQEYNINRTGNKRKFTTLTNGTSEEESDSTGIWDFVECTHRPH
CNCLRHKNQKQRSSSTSGHPPSSGQPAQLALKHKLGEKLEKGDKQQKRPQMPFHHRNYVS
EEQSMEPQTQRLCLRSQEEGSYPSLHHVDTVPSKAPTLHTHGPPADLVGSPPPPPLSPHP
CDHVEGDMTPSEMKNSSTPIHQQFYPPSVEPCLLPQKGTSEEPQLENMPMPLPFPPAYSE
TLEPTVFVGSAINPNEDCTHNPWKYFNLPRKKASNFLTPQLPVDKIRDDSGRSAGTESVV
SVTELMSGSTQTLKVSQELIETYAQRRNSHLASATGDREYSDEPDPYAFEEGDEEFSVKD
KKDKPGAEREGNKKHMVDEDTATADDGQGQPGSKPSASTSLIHENDLAVSYSDLDKIFNS
DEDELAPGSKRAGVGTEDKFGCKDNKAASTDPLSCISSADLQQMFPTPPSLEQQGYSPMN
SGSKDSLETGTGLTLLDGSQFNNHFKMEVEEGFCSPRPSEIKDFSFVYKPETCQLLIGCS
MYAPLKMLPSQCLLPVKLPEDCVYTPSWTLGKMELIPSVTNVNLLTKDSNVPSVEPDYSQ
TYTPQTHTPFMSTSAPPSNSGTGILPSPATPRFSVPTPRTPRTPRGPSSVQGSLKYDNSD
LYSPASTASTCRPLSSVEPATVPSIPEAHSLYVTLILSESVMNLFKDCNFDSCCVCVCNM
NIRGADVGVYLKDNGEAQYPCTCGFSAVANRRFGQSAGLFLEDELDVVVRGSDASRDTER
CFEELRSSAMHKPGSLMEKPPDELILLLQDQCTNPFAPMAGVEYPKQGSVPSSFLRVEER
DCYNDCYMALEHGRQFMDNMSGGKVDETLVKSTCLHQWPKCKSADMNKLFSQDVLRVLLS
LQPVLQDTIQKKRSVRSWGVQGPLTWQQFHKMAGRGSYGTDESPEPLPIPTFLVGYEYDF
VVLSPFGLPYWEKLLLDPFGSQRDVGYVVICPENEALLRGAKSFFKDLSAMYEACQLGQH
RPICKSHPEGVFKVGTTEGRSMTEQPLSDWFLKMAARDGNNEAFNKLKLFAQVCRYDLAP
YLSEQSLDSSLLSQRSPVVASSSNQTSSSSSTASGPQSTNTTSSSTSSAQPAQMNSTPPS
STSGSQTVGGMASAKPSSYSPFGIAGVQGSTSQNGPQSNPQGAGGLAENGPSANQPQVPT
EAPESTMERDKVGKPTDGESHAVSYPPAIVVYIVDPFSYEDADREVHSSAYTLGLLRCYM
EMLQFLPPRIRNAVSVQIIPCQYLLQPVHNGERHLYGQHLKSLAFSVFTQCRRPLPNSTN
FKALTGFGPGLAIDMALRNPERPECLRLYTPPFILAPVKDKQTELGETFGEASQKYNILF
VGYCLSHDQRWLLASCTDQHGELLETCIISIDIPNRARRKKGSARRVGLQKLWEWCLGLV
QVTSLPWRVVIGRLGRMGHGELRDWSILLSRRNLQSLSKRLKETCRLCGISAADTPSILS
ACLVAMEPQGSFVIMPDSVSTGSVFGRSTTLNMQTSQLSTPQDTSCTHILVFPTSAMVQV
NTNTSEPIDINFNPINPDGSDGMGIFDLFDNDMVDPDLINILPNSPTTSPVHSPGSHFHQ
GGDGGKGQGADRMESHEEALNILQQPMALGYFVSTAKAGPLPDWFWSACPQAQNQCPLFL
KASLHLHVSSVQSDELLHSKHSHPLDSNHTSDVLRFVLEQYNALSWLTCDPATQDRRSCL
PVHFVVLTQMYNFIKNML
NT seq
6357 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgtgctttgtaccgaacggggccagtttggaggactgccactccaatctcttc
tgcctggctgatttgactggaataaaatggcggcggtttgtgtggcaaggacccacctct
tcgccaatccttttcccggtgaccgaggaggaccctatcttgtgtagcttcagccgatgc
ctgacagcagatgtgctgagtgtgtggagaagacaccaaaccccgggtcgcagagagctc
tggcttttctggtggggggatgacccaagttttgcagagctaatccataatgagctctcg
agtgaggaggatggggagtgggagagtggcctgtcctacgagtgtcgaacgctcctgttc
aaagccatccacaacttattggagcggtgtctcatgaaccgcggctttgttcgcatcggc
aagtggtttgttaagccataccagaaggaggagaagaccattaataaaagcgagcacctg
tcttgtgcattcaccttcttcgtacacggggacagcaatgtgtgcacaagtgtggagatc
gctcaacatcagcctcttcagcgactgaacgaggaagatatcagcctcgcccagcagaac
tccagccccttgcaagtcatcctgagtccgtacggcttgaatgggagcctcaccggtcag
acttttaagatgtcagaccacccgactcagaagctcatagaagagtggaggcagttctac
cccatcagtcccaatcccaagcaggtcccagaagacaaaatggaggatccggactgggag
gatgactccatggcagctgtggaggtccttgtcgccggagtacggatggtttacccttcc
tgtctggtacttctccccctgtcggacatccctgctgtggtcccgcagggctcagtcaac
acctcaggaagcctgtgtggtgctccgcagggccaggcttctcacagggatcctgccatg
tcctccgtcactctgactcctccaacgtcaccagaggaggctcagactgattatcagcct
tcacagaggtggctcaagttgtcttctgcatcggatggcaacagctctaacaacactctt
catgggggtaaaatccctcgcaggctggccagccagatggttgagtctgtgtggcaggag
tataacattaaccgtacaggcaacaagaggaagtttactaccttgaccaatgggaccagt
gaggaggagtcggacagcactggaatttgggattttgtagagtgtacccacaggccacat
tgcaactgcttacgacataagaatcagaaacagcggtccagcagcacctcaggacacccg
ccttcatcaggccagcctgcccagctggccctgaaacacaagctgggcgagaagcttgaa
aagggggacaagcagcagaagaggccgcagatgccttttcaccaccgcaattatgtgagc
gaggagcagtctatggagccacagacccagaggctttgtttacgatcacaggaggagggc
tcatatcccagcctgcaccacgtggacacggttccctccaaagcccctacgctgcacacg
cacggcccccctgcagacctcgtcggttcgccgcctccccctccactcagcccgcatccc
tgcgatcacgtagaaggtgacatgactccaagtgagatgaagaactcatcaacgcccatt
caccaacagttctacccgccttcagtggagccctgtctgctgccacagaagggaacatct
gaggaacctcagctggagaacatgcctatgcctctgcccttccccccagcctacagtgaa
accttagaacccaccgtctttgtgggttccgccatcaaccccaatgaagattgcacccac
aacccttggaagtatttcaacctgcccaggaagaaggcctccaacttcctgactccccag
ctacctgtggataaaatacgagatgattcagggagaagtgcaggaacagaaagcgtcgtc
tctgtcactgagttgatgtcgggctccacgcagaccctaaaggtgtcccaggagctgatc
gagacctacgcccagcgaagaaacagccatcttgcctcagccacaggagacagagaatac
agtgatgagccagacccttatgcctttgaagagggagacgaggagttcagcgtcaaggac
aaaaaggacaagcctggagctgagcgagagggcaacaagaaacacatggtggatgaagat
actgcaacagcagatgatggtcagggccaaccgggcagtaaaccttccgcctccaccagc
ctcatccacgagaacgacttggctgtgtcctacagtgacctggataaaatcttcaattcg
gatgaagatgagctagcgcctggatccaaaagagctggtgttggaacagaggacaagttt
ggctgtaaagacaataaagcagcctcgacggaccccctgtcttgcataagctcggccgac
ctgcaacagatgtttcccaccccgccctccctggagcaacagggttattctcccatgaac
tccgggagtaaagatagtctggaaacggggacgggcctcacccttctggatggcagccag
tttaacaaccacttcaagatggaggtggaggagggattctgtagcccgaggccatccgaa
ataaaggacttctcctttgtatacaagccagagacgtgtcagttgttaatcggctgttcc
atgtacgcacccctgaagatgctacccagccagtgtctgttgcctgtcaaactgccagaa
gactgtgtgtacacgcccagctggaccctgggcaaaatggaactaataccctcagtgacg
aacgtcaatctcctcaccaaagacagtaacgtccccagtgtggagccggactacagccag
acctacacccctcagacccacacacccttcatgtccaccagtgcccctccaagcaacagc
ggcacaggcatcctgccctccccggccacgccacggttctctgtgcccacgccacgcact
ccacggactccccgcggcccgtcaagtgtccagggttcactcaagtatgacaactctgac
ctttactcccctgcctccactgcctccacctgccgacctctcagctccgttgagccggcc
acagtaccttctatccccgaggctcacagtctctacgtcacccttattctctccgagtcc
gtgatgaacctcttcaaggactgcaactttgacagttgctgcgtctgcgtctgcaacatg
aacatcagaggagcagatgtaggcgtgtacctcaaggacaacggcgaggctcagtatccc
tgcacttgtggcttcagcgcagtcgccaatcgacgttttggccaatcggccgggctgttt
ctggaggacgagctggacgttgtggtgcgaggctcagacgctagtcgggacacggagcgg
tgtttcgaagagctgcgatcttccgcaatgcacaagcctggcagcctgatggagaaaccc
ccggatgagctaattctgctgctgcaggaccagtgcaccaacccgtttgctccaatggcc
ggcgtggagtaccctaagcaaggctcggtccccagctcctttctgagggtggaagagaga
gactgttataatgactgctacatggccctggagcacggcaggcaattcatggacaatatg
tcaggaggcaaagtagatgaaacgctagtgaaaagcacctgtcttcatcagtggccaaaa
tgcaaatcggcagacatgaacaagctattctctcaggacgtcctgcgggtgttgttgtcc
ctccagcctgtgctgcaggacaccattcagaagaaaaggagtgtgcgctcttggggcgtt
caggggccgctcacttggcaacagttccacaagatggctgggaggggatcatatggtaca
gacgagtcacctgagcctcttcccatccccacttttttggtcggttatgagtatgatttt
gtggtgctgtctccttttgggttgccctattgggagaaactccttctggatccttttggt
tcccagagagatgtcggatatgttgtcatctgcccagaaaatgaagctctgctccgcgga
gcgaagtcattcttcaaagatctcagtgctatgtatgaggcatgccagcttgggcaacac
aggcccatctgcaagagtcacccagagggcgtattcaaggtcggcaccacagaaggcagg
agcatgacagagcagccccttagtgactggttccttaagatggctgccagagatggaaac
aatgaagcctttaataagctcaaactctttgctcaagtgtgccgctatgatctagcgccg
tacctgtcggaacagtctctggacagctccctattgtcccagcgcagccccgtcgtggcc
tcttcctccaaccagacctccagctcttccagcaccgcctcaggaccccagagcaccaac
actaccagctccagcaccagctctgcccagcctgcccagatgaacagcacccctccctcc
tccacctcaggctcccagacagtcgggggaatggcttcagccaagccgagctcttactcg
ccgtttgggatagcaggcgtgcagggcagcacctctcagaatggaccccagtcaaaccca
cagggtgccggggggctggcagaaaatggaccctctgccaaccagcctcaagtgcccact
gaggcgccagagagcacaatggagagggacaaagtgggcaagccaacagacggagaatcc
cacgccgtgtcttacccgcctgccatcgtggtgtacatcgtcgaccccttcagctacgaa
gacgccgacagagaggtccactccagcgcctacacgctgggcctactgcgctgctacatg
gagatgctccagttcctgccacctcgcatcagaaacgctgtctccgtacagattatcccc
tgccagtatctgctgcagccagtgcacaacggggagcgccatctctacggccagcacctc
aagtcgctggccttctccgtgttcactcagtgtcgccggcctctgcccaactccaccaac
ttcaaggcgctgacaggttttggtcccggtcttgccatcgacatggcactcaggaaccca
gagagacccgagtgtctgcgtctgtacacgccgcctttcattttggctcctgtgaaagac
aagcagactgagctaggggagacgttcggcgaggcctcccagaagtacaacatcctgttt
gtcggctactgtctgtcccatgaccagcgctggttgctggcctcctgcactgaccaacat
ggggaactgctggaaacctgcattattagtattgatatacccaacagggcccgcaggaaa
aagggctcagccaggcgagtgggtttgcagaagctgtgggagtggtgccttggcctggta
caggtgacatcgctgccatggcgggtggtcattggccggctcggtagaatgggccacggc
gagttgagagactggagtattctgctgagcagaaggaacttgcagtctctcagtaagcgt
ctgaaggagacgtgtcggttgtgtggcatctccgccgctgacactcccagcatccttagc
gcctgtctggttgccatggagccccagggttcctttgtcatcatgccagattcggtctcg
acgggttcggtgttcggtcgcagcaccaccctcaacatgcagacgtcgcagctgagcact
cctcaggacacatcctgcacacacattctggtgttccccacttcagccatggtgcaggtt
aacaccaacacttcagagcccatagacatcaacttcaatcctataaatccagatggatcg
gatggaatgggcatctttgacctgtttgacaacgacatggtggatccagacctcatcaac
atcttgcccaactcccccacaacctcgcctgtccactcgcctggctcccacttccaccag
ggaggggatggaggcaagggacagggtgccgatcgtatggagtcccatgaggaggctctg
aacatcctgcagcagccgatggctctgggctactttgtctcgacagccaaggctggacca
ctacctgactggttctggtccgcctgtcctcaagcccagaaccagtgcccactcttcctc
aaggcctctctgcacctgcatgtgtcttctgtccaatcagatgagctcctgcacagtaaa
cactcccaccccctggactccaatcacacctccgatgtgctcagatttgttctcgagcaa
tacaacgccctctcctggctgacgtgcgaccctgcgacccaggaccgacgctcctgtctg
cccgttcactttgtggtgctcacccagatgtacaacttcatcaagaacatgctctga
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integrated database retrieval system
