Pseudoliparis swirei (Mariana hadal snailfish): 130210614
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Entry
130210614 CDS
T09868
Symbol
frem2b
Name
(RefSeq) FRAS1-related extracellular matrix protein 2b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130210614 (frem2b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
pswi04091
]
130210614 (frem2b)
Lectins [BR:
pswi04091
]
C-Type lectins
Lecticans
130210614 (frem2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Cadherin_4
Big_9
TMEM154
DUF6522
Motif
Other DBs
NCBI-GeneID:
130210614
NCBI-ProteinID:
XP_056297041
LinkDB
All DBs
Position
20:complement(15654046..15707247)
Genome browser
AA seq
3112 aa
AA seq
DB search
MAWIIPPHLHRIGTAFVLLAVILTGDAVAQVFDSYGLSYALRSDPSEDTILVANNGVRVP
FGRSVFIDPINDLVIQLQPGDRCSMTVLDNDPLSQSPGHLSPKKFPCEFGPNDVKYSHFG
SRSPPRDRVRLQLRYDTQTDTIIIPFMMEVEVIFTQLEVLTKNMPLTVEKLLSTSNPIDR
RILEFAYDKSAQQCKIASLSSGSVLPRYGQLVDEDSLGTMVDCDEFIQMNIRYQHTFALK
SPNRDYIPMLVELHDKEGNLLKQEFFQILVRIKNGEENTAPKPSFVAMMMMEVDQFVMTA
ITMDMLAAEDVESNPDELIFNITSTLSFEEGYIVSTDDRNLPITSFYQGDLKDLKIAYKP
PAVDSNSERIFQIEFEVVDTEGAVSDPFAFMIVVKPMNTLAPVVTRNTGQLLYEGQSRPL
SSSHSLEISDEDSLHNVKITVIDGLRHGELTVLGSRRKFFTPADLDAGVVIYQHDGSDTY
SDNIIFRMTDGTNEVEFLFPITVVPTDDEPPIINANTGLILFKNQIMQISSLMLSAADID
SEDSSIKFTIEPPFSTIGQLLLRQSEAPEDPSTWKFNTEDELYEKVVTEWLQRDITDGKL
FYIHIGPHSISTVMDQFVFGVQDDNDPPNQSSESSFIIKIIPVDDIPPELYPGTTLQMTV
HEYQLTYFRKKFLRYTDLDSEDRDLKYKIIQPTTDTDENSPVVLGALVLTEKPNTEVTVF
TQAQINHHKIAYKPPELELGITSHVLQFRYTVEDVSGNIVEGDFTIFLKPVDNTPPQITN
SGFTVFERGTHIFTSDELDTSDTDTDSKQISFTITQPPLHGQIQFTFSVITRGDTFSLED
IGHGRMSYIHNGDESTVDLIQIDVSDGIHIVPITIQISVKSIDDETPTISLPAGTIGSYI
DVLENGATEITSNVIQGRDEDTDDLRLTFIVEDPPSLGEILVKGVPSGTFTQADVINGFV
VYAHTSGEIGLATKEDFFNLTLTDMSDEWTVGGNKITGVRVHVTILPLDSQAPEVFLGPQ
FSVVEGAKNAIQILHISAEDADTSNDHLLCTIIVQPTSGYVENISPAPGSEKSRSGTAIS
AFTIKDIRQNHIYYVQSIHKGVEPVEDRFTFRCSDGINFSERHFFPISIIPSNDEKPDIY
MREFVVMEGMNIVIDIPILNGIDADLPSDQLIFIITKSPKHGFIFNQLITGTIPVSNFTL
DQIREASSIVYEHDDSETTEDSFDIVLTDGKFSVEKTVIVMIIPVDDETPRMAINDGLDI
EIGDVKVINSNVLKATDLDSEDETLTYIVRYGPSQGYLQWVTSGTLQNITVGMNFTQNEV
DQGLIVYIHNGQEGIRDLIKFDVTDGINPLIDRYFYVTVGGIDMVFPDVISKGVSLKEGG
RVTLTTDLLSTSDLNSPDEHLVFTITRAPMRGHLECTDTPGMPIASFTQLQLAGNKVYYI
HTSKDEVKMDSFEFEVTDGYNPVFRTFRISITDVDNKKPVVTVHSLVVTEGEHKLITPFE
LTVEDRDTVDRLLKFTVTQIPVHGRLLFNNTRAVTSFSKQDLNDNMISYKHDGTESAEDS
FSFTVTDGTHTDFYIFPNTVFGTRKPQMMKINVLPVDNGVPQILVNKGAPTLRVLENGHL
GFVITSKSLKAADRDSIQNSVTFRITVGPGHGYLINLGKGNATIVTFTQAEIDDRNICYV
LKDGDNATNDIFHFSIEDSGGNKLKNQQFRLNWAWISFEKEHYVVDEEVKFLEVVLKRRG
YLGETSFVSIGTTDGTAQKDNDFRGKSQKQVQFNPGQTTATWKVRILSDSEYEVSETFQI
ILSEPVMAALEFPEIATVEILDPDDESTVFIPSATYNIEEDIGELLIPVHRSGDVSLELM
VICFTQQVSATGTIPTTVLSYSDYISRPEDHHSILRFDKGEVEKSCRVVIIDDSLYEDEE
SFNVTLGMPMGGRLGSEFPAARITIIPDMEDAPIFYFGNTDYHVDESDGFVEVQVWRTGT
DLSKGGTVTVRSRKTDPVSAEAGVDYVGISRNLDFAPGVTMQIFRVTILDDLGQPVLEGL
EKFELVLRMPMNGILGEPSKATILINDSISDLPKVQFRDAVYVGNENSGQISATVYRSGD
ISYKSTVRCYSRQGTAQVMMDFNERPNTDGSIITFLPGEIEKPCVLVLVDDTEHEEEEEL
RLVLGSPKSESPFGASVGGQNETLVKIKDDADKAIIRFGETKFSVNEPKESGQVSVVKIP
VLRVGDTSKVSVVRVHTKDGSATSGEDYHPISEEIKFKYGDTQHYVEVEILYDSVREMRE
AFTVHLKPDENMVAETTMSKAIIYIEETNSMADVTFPSVPRVVSLLHYDDIDRTRDSPPV
AGYPVICVTACNPKYPDYDKTGSICVSENINNTLTRYRWLISAPTSQDGVTSPMREVDFD
TFFTSSKLITLDSVYFQAGSRVQCAARGVNSNRDEGLELSSPIVSISMDEGMCQPRVAGT
VGAEPFTAKLRYTGTEETEHPNLIKLTVTMPHIDGMLPVVSTRALSNFELTLSPDGTRVG
NHRCSNLLDHAEVKTRYGFLTEATRNPEVIGETSSYQYSTSLRGSSTLRFYRNLNLEACL
WEFTSYYDMSELLSDCGGNIGTDGQVLNLVQSYVTLRVPLHVSYVFHSPVGAGGWQHFDL
QSELRLTFVYDTAILWRDGVGSPPEAELQGALYPTSMRINGQGQLVVNFRTEARFRGLFV
FAHPASPLTSMVMCPDHPGLTFNLSLVRNEPTYNQPIQQWTFVSDFAVRDYSGTYTVKLI
TCTSPPSLEYTIPPVCNPREPLTFDMDIRFQQVSDPVPAEFSLNTQMILLSKRTLWLSDS
SMGFGQETDTAFSQGDTIYGRVMVDPVQNLGDSFICNIEKVFLCTGADGYVPKYNPSNFE
FGCLADAPSLLYRFKIIDKAQPETQARSFGNVAFDAFLAVDDPGALALVRQSASDGFRID
SSALFQVSAGREWFIHTIYTVRSRDNANRGIGKRSLEYHVMSKHTNTLPKVQHRTRRSAN
GVPDVIDEIGQTNNRGTNILHIALDRSSQQRTSPEREIFTKGIIPRELNQRDNSGDRLVL
IIGIFVGLLLMVLIIIVVVLLVRSKREKKDVPKSSSSAKPTMTQALSDSSEV
NT seq
9339 nt
NT seq
+upstream
nt +downstream
nt
atggcttggattattcccccgcatctgcacaggatcggcactgcttttgttttgctcgca
gtgattctgacaggtgatgcagttgcgcaggtttttgacagctatggattatcatacgcc
ttgaggtccgacccgtcagaggacacgatactggttgccaacaatggggtccgcgtgcct
ttcggaagatcagtcttcattgatcccatcaacgatttggttatccaacttcagcccggt
gatagatgcagcatgacggtcctggacaatgatcccctgtctcaaagtcccggacacctg
tctccgaaaaagtttccgtgtgaatttggccccaacgacgttaagtattcgcacttcggc
tccaggagccctccgagggatagagtgagattacaactcaggtatgacacccaaacagat
accattataataccttttatgatggaggtggaagtgattttcacacagctggaagttcta
accaaaaatatgcctctcactgtcgagaaactgctcagcacaagtaaccccattgataga
agaattttagaattcgcttatgataaaagtgcccaacaatgcaaaatagcctctctctca
agtggcagcgtgctgcccaggtatggacaacttgtggatgaggacagccttggaacaatg
gtggactgtgatgaatttattcaaatgaatattcgttatcagcatacttttgctttgaag
tcaccgaacagagattacattccaatgcttgtggagttacatgataaggagggcaatttg
ctcaagcaggaatttttccaaattttagtgaggattaaaaatggagaggagaacacggct
cctaaacccagctttgttgcgatgatgatgatggaagtagaccagtttgtaatgacagca
attaccatggatatgctggctgcagaggatgttgagtctaatcctgatgaattaattttt
aacatcacatccaccctgtcctttgaggagggctacatagtgagtacagatgataggaat
ttaccaataacctcattctaccaaggagacctcaaagacttgaaaatcgcctacaaaccc
cctgctgtggattcaaacagtgagcggattttccagattgagtttgaggttgtggacaca
gagggagctgtgtcagacccttttgctttcatgattgttgttaagcctatgaacacattg
gcccctgtagtgactcggaatactggacagttactgtatgaaggtcagtcgaggcctcta
tccagttcacatagtctggaaatcagcgatgaggacagtttacacaatgtcaaaattact
gttattgacgggctgaggcacggagaattaaccgttctgggctcaaggaggaaatttttc
accccagctgacctcgatgctggagttgtcatttatcaacatgatggcagtgacacctac
agtgataatattattttcagaatgacagatggaacaaatgaggtggagttcctgtttccc
atcactgttgtgccaactgatgacgagcctcccattatcaatgccaacaccggtttgatt
ttattcaaaaaccaaattatgcaaatctcctcactcatgctcagtgctgcagatatcgac
tcagaggattcttcaatcaaattcacaatagagccccccttttccacgattgggcagctg
ttgctgcgtcagtctgaggccccagaggacccatcgacctggaagtttaatacagaggat
gaattgtacgagaaagtggtgactgaatggctgcagcgggatataactgatggcaaactg
ttctacatccacattgggcctcacagcatcagcacagtcatggatcagtttgtgtttgga
gttcaagatgacaacgacccaccaaaccaatcaagtgagagctcattcattataaaaatt
atccctgtagacgacatcccacctgaactttaccccggcacgactctgcaaatgactgtg
cacgagtatcaacttacttacttccgaaagaaattcctccgttacactgacctggactca
gaagatcgagatctcaaatacaaaatcatccagccaacaacagatacagatgagaatagc
cccgttgtattgggggctttggtcttaactgaaaagccaaacactgaagtcacagttttc
actcaggcacaaattaaccatcataaaatagcctacaaaccgcctgagcttgagcttgga
attaccagtcatgttttgcagtttcggtacactgtggaggatgtttctggaaatattgtt
gaaggagatttcactatatttttaaagcctgtggacaacacgccacctcaaataaccaac
tctggattcactgtgtttgaacgtggcacacatatctttacgagtgatgagctggacacc
tcagacacagacacagacagcaaacagatatccttcactattactcagcctccactgcat
ggccagatccagtttacattttctgttattacaagaggagatactttcagcctagaggat
attggacatggtagaatgtcatacatccataatggagatgaatcaacagttgatttgata
caaatagatgtcagtgatggcatccacattgtcccaatcacgattcagattagtgtgaag
tcgattgatgatgagactccaactatcagccttccagctggcacaatcggctcctacata
gatgtactggaaaatggagcaacagaaatcacaagtaatgtcattcagggaagagatgaa
gacacagatgacctccgtttgaccttcattgttgaggacccaccatcattaggtgaaatt
ctagtgaaaggtgtcccatctggcacattcacccaagctgatgtcattaacggctttgtg
gtctatgctcataccagtggtgagataggcttggccacaaaggaggactttttcaatctc
acattgacggacatgtctgatgagtggaccgtaggtggaaataaaatcacaggtgtaaga
gtgcatgtaactattcttcccctggacagccaggctccagaggtatttctgggtccacag
ttctctgttgtggagggagcaaagaatgccattcaaattcttcacataagcgctgaagat
gcagacacttccaacgatcacctcctttgtacaatcattgttcagccgacttcagggtat
gtggaaaatatctcccctgccccaggttcagaaaaatccaggtccgggacagctattagt
gctttcaccatcaaagacatcagacagaatcacatttactatgttcaaagcattcacaaa
ggagtcgagccagtggaggacaggtttactttcagatgctctgatggcatcaatttctct
gaaaggcactttttcccgatatccataatcccctctaacgatgaaaagccagatatttat
atgagggagtttgtagttatggagggcatgaacatagtcatcgatattcccattctgaat
ggtattgatgcagatctcccctctgatcagctcatattcattattactaaatcccccaag
cacggatttattttcaatcagctcattactggcactatccctgtctcgaacttcaccttg
gatcagatcagggaggcctccagcattgtgtatgagcatgatgactcagagaccacagag
gacagctttgatattgttctcacagatggaaagttcagtgtagagaaaacagtaatagtt
atgattatccctgtggacgatgagactccaaggatggcaatcaatgacggccttgacatt
gagataggtgatgtgaaagtcataaacagcaatgttttaaaagcaaccgatctggactct
gaggatgaaacgctaacttatattgttcgctatgggcccagtcagggatatttacagtgg
gtaacttctgggactttgcaaaatatcacagttggaatgaactttacacagaacgaagtg
gatcagggtttaattgtgtacatccataatggacaagagggaattcgggacctcatcaaa
tttgatgtaacagatggaatcaatccactgatagacagatacttctatgtcacagtgggt
ggtatcgacatggttttcccagatgtgatcagtaaaggtgtatcacttaaagagggtggc
agggttactctgacaacggacctgctcagcaccagtgacctcaacagcccagatgaacac
ttggttttcacaatcaccagagctcccatgagaggacacctggagtgcacagacacacct
gggatgcccatcgcatccttcacacagctccagctggctggcaacaaagtatactacatc
cacacttcgaaagatgaagtaaaaatggatagttttgaatttgaagtgactgatggctac
aaccctgtgtttcgcactttccgcatctccatcactgacgtggacaataaaaagcctgtc
gtgacagtccacagcctagtggtaactgagggagagcacaaactcatcacgccctttgag
ctaacagtggaggacagagacactgttgatcgcctcttgaagttcacagtcactcaaatc
ccagttcatggtcgcctgctctttaacaacacccgggctgtgacctccttctcaaagcag
gacctgaatgacaacatgatcagctacaaacatgatggcacagagagtgcagaggacagc
ttttccttcaccgtcaccgatggcacacacacagacttctacatctttccgaacacagta
tttggaactcgaaagccccaaatgatgaagattaatgttctaccagtggacaatggagtg
ccgcagattctggtgaacaagggagccccaacgctgcgggttctggagaacggtcacctg
ggatttgtgatcacgagtaagtctcttaaagcagcggacagagacagcattcagaattct
gtgacttttagaattactgttggcccaggacacggctacctgatcaacctcggcaaagga
aatgcgactatcgtcaccttcacacaagctgaaattgacgacaggaacatatgctatgtt
ctgaaggatggcgacaatgctacaaatgacatcttccatttctccattgaggatagcggt
ggcaacaaattgaagaaccagcagttccgtctgaactgggcttggatctctttcgagaag
gaacactacgtggtggatgaagaggtcaagttcctggaagtggtgctgaaacgtcggggc
tacctgggggagacttcattcgttagtataggcacgacggatggcactgctcaaaaggac
aacgattttcgggggaaatctcagaaacaggtgcagttcaatccaggccagaccacagcc
acctggaaggtgcggatcctgtcagatagcgagtacgaagtgtcagagaccttccaaatc
attttgtctgagccggtgatggccgccctggaattccctgagattgccactgtagagatc
ctggacccggatgatgagtccacagtgttcataccctcagccacatacaacatagaggag
gacattggggagctgctcatcccagtgcacaggagtggagatgtgagtctggagctgatg
gtcatctgcttcactcagcaagtttcggccacaggcaccatccccaccacagtgctgtcc
tactccgattacatctccaggcccgaggaccatcacagcatcctgcgcttcgacaaggga
gaggtggagaaatcctgccgggtggtgatcattgatgactccctgtacgaagacgaggag
agcttcaatgtcaccctcggcatgccgatgggaggccgtctgggctccgagttccccgca
gctcgaatcacaatcatccccgatatggaagacgctcccatcttctacttcggcaacaca
gactaccacgtggatgagagcgatggctttgtggaggtgcaggtatggaggacggggact
gatctctccaaaggaggaaccgtcacagtgcgctccagaaagacagatcctgtctcagct
gaggctggtgtggattacgttggaatcagccggaatctggattttgcaccgggggtcacc
atgcagatatttcgtgtgaccatcctggatgacctgggtcagccggtgctggaggggcta
gagaagtttgaactggtccttcgtatgcctatgaatgggatactcggagagccgagtaag
gctaccatcctcatcaacgactcgatttcagacctgcccaaggtgcagttccgtgatgcc
gtgtatgtaggcaatgagaactcagggcagatctcagctactgtttaccgaagtggagat
atcagctacaagtccacagttcgctgttacagcaggcaggggaccgcccaggtcatgatg
gactttaatgagagacccaacacagatggttccatcatcaccttcttaccaggagagatt
gaaaagccatgtgtactggttctagttgatgacacagaacatgaggaagaagaggagctc
cgacttgtgttgggaagccccaaaagtgaatctccatttggagcatctgttggagggcag
aatgaaacactcgtcaagataaaagacgatgcagacaaggcaattattaggtttggagag
accaaatttagtgtgaatgagccaaaggaaagtggccaagtttctgtggtgaagatccca
gtgctgcgtgttggagacacctctaaagtctctgttgtccgagttcacaccaaggatgga
tctgctacgtctggggaggactaccatcccatatctgaggaaattaagttcaaatatggt
gacacccagcactatgtggaggtggagattttatatgacagtgtcagagaaatgagggag
gcgttcactgtgcacctaaagcccgatgagaacatggtggcagagacaacgatgagcaaa
gctataatctatatcgaggagaccaacagcatggcggatgtgaccttcccctcggtgccc
agagtggtttccctgttgcattacgatgacatcgacaggacgagggactctccccctgtg
gccggataccctgtcatttgtgtcactgcctgtaatcccaagtacccagactatgacaaa
acaggctcaatctgtgtaagcgagaacatcaacaacaccctaacgcggtatcgttggctc
ataagcgccccaaccagccaagatggtgtcacgagtcctatgagggaagtagactttgac
accttcttcacctcctccaagctcatcactctggattcagtctactttcaagctggttct
agggtccagtgtgccgcaaggggcgtgaactctaacagggatgagggtctggagctcagt
agccccatagtgtccatcagcatggacgagggaatgtgccagcctcgagttgcaggcaca
gtcggggcggagcccttcactgccaagctgcggtacactggaacagaagaaacagaacac
cccaacctcatcaaactaactgtgaccatgccccacattgatggcatgttacctgtcgtg
tcaacccgagccctgtccaactttgagctcacgctgagcccagacggtacccgtgttggc
aaccatcgctgctccaatttgttggaccacgctgaggtcaagacccgctacggcttcctt
actgaagccactagaaatccagaagtgatcggcgagacatcctcttaccaatacagcact
tccctcaggggatccagcacactgcgattctacagaaacctcaacttggaagcttgtttg
tgggaattcaccagctactatgacatgtctgagctgctcagtgactgtggaggcaacatt
gggactgatggacaggtgttgaatctggtccagtcctatgtgacgctacgcgtaccgctc
catgtgtcctatgtcttccattcccctgtgggagcaggaggatggcagcactttgattta
cagtcagagctcaggctcacttttgtttacgacactgccatcttatggcgggatggtgta
ggtagcccaccggaggccgaactacaaggtgccctgtacccaaccagcatgcgtataaat
ggccagggacagctagtagtgaacttccgcacggaggctcgattcagaggcctgtttgtg
tttgcacatccagcttcaccactgacctccatggtcatgtgtcccgaccaccctggtttg
acctttaacctcagtcttgtgaggaatgagccaacctacaatcagcccatccagcagtgg
acatttgtttcggattttgctgtgcgtgactactctggcacgtacacagtgaagctgatc
acctgcacatcccctcccagcctggagtacaccatccctcctgtttgcaaccccagagag
ccgcttaccttcgacatggacattcgctttcagcaggtgagcgaccctgtgccggctgag
ttcagcctgaacacgcagatgatcttactctcgaagcggacgctctggctctcagacagc
tccatgggcttcggacaggagaccgacactgccttctcacaaggggatacgatttacgga
agagtaatggtggatccggtgcagaacctgggtgactccttcatttgtaacatagagaaa
gtcttcctatgtactggcgccgatgggtatgtcccgaaatacaaccccagcaactttgag
tttggctgtctggctgatgccccatcactactctacagattcaagataattgacaaggcc
cagccagagacccaggcccggtcgtttggtaatgtagctttcgatgccttcctggcagtg
gatgaccctggcgctttagctctagtaagacagtctgcgtcagatggtttcagaattgat
tcctcggctctcttccaggtatctgccgggagagagtggtttattcacaccatctatacg
gttcgttcccgggacaacgctaaccgtggcatagggaagagaagcctggagtaccatgtg
atgagcaagcacacaaatacccttccaaaggttcaacatcgcaccagaagatcagccaac
ggagtgccagacgtaatagacgagatcggtcagactaacaatcgtggcaccaacatcctt
cacatcgctctggaccgtagcagtcagcagaggacgagcccggagagggagatcttcacc
aaagggatcatccctcgtgagctcaaccagagagacaacagtggtgacagactagtgttg
atcattggtatctttgtcgggctgctcctcatggttctcatcatcatcgtggtggtgctg
ctggtccggtccaagcgagagaagaaagacgtacccaagagctccagcagcgcaaaaccc
acgatgactcaagccctcagtgacagctccgaggtctaa
DBGET
integrated database retrieval system
