Pseudoliparis swirei (Mariana hadal snailfish): 130210618
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Entry
130210618 CDS
T09868
Name
(RefSeq) coatomer subunit beta'-like
KO
K17302
coatomer subunit beta'
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130210618
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pswi04147
]
130210618
Membrane trafficking [BR:
pswi04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
130210618
Exosome [BR:
pswi04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
130210618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR75_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
PEP5_VPS11_N
Beta-prop_IFT140_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_LRRK2
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_WDR75_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Beta-prop_IP5PC_F
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
130210618
NCBI-ProteinID:
XP_056297047
LinkDB
All DBs
Position
20:3450535..3463137
Genome browser
AA seq
1014 aa
AA seq
DB search
MPLRLDIKRKLTARSDRVKSADLHPTEPWMVASLYSGTVVVWNHETQMMVKTFELCDLPV
RVAKFVARKHWVVAGADDMQIRVFNYNTLERVHMFEAHADYIRSIVVHPTQPYILTSSDD
MLIKLWDWDRKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTVKVWQLGSRTPNFT
LEGHEKGVNCIDYYGGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVTCVCFHPE
LPIILTGSEDGTVRVWHSNTYRLENTLNYGMERVWCICSQPGSNSVALGYDEGSIIIKLG
REEPAMSMDASGKVMWARHSEVQQANLKSMGGAEVRDGERLPLGVKDMGSCEIFPQTIQH
SPNGRFVVVCGDGEYIIFTAMALRNKSFGSAQEFVWAHDSSQYATRESSSMIKIFKNFKE
KKAFKPDFGAEGVFGGFLLGVRSNSGLAFYDWENADLVRRIEIQPKHVFWSDSGELVCIG
TDESFFVLRYLPERVAAAAESKEEITEDGIEGAFEVLGEVPGVVKTGVWVGDCFIYTSSL
NRLNYYVGGEIITIAHLDRTMYLLGYIPKDDRLYLGDKELNVVSYSLLLSVLEYQTAVMR
RDFGTADKVLPTVPKEQRTRVANFLEKQGFREQALAVSTDPEHRFELALQLGELTLAHEL
ASEAESEHKWKQLAELATAKCRFGLAQECLHQAQDYGGLLLLATASGNAAMVDKLAEGAE
RSGKTNVAFLTCFLQGRMDKCLQLLIDTNRLPEAAFLARTYLPSHVSRVVKLWKESLSKV
NQKAADALADPSQYSNLFPGLQQALLAEDYLKETHVGVRPAAEYPLVTPNEARDVLKESE
GFEARGEPAGSEGGGDAVNEAVTVAAEPILLKQEMVDPVAEEEEEESIPMEAAAPLPVTV
TEDSASLEEEEEEALISVEVPGLSPEPLVPLQVPAPEHTAALPVEPEDHPKPAVALQAEP
EGSTAGEEGAGPKGAEQPAEAVEHDEILDDLDLDNFDLEDIDTADINLDDEFSD
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgcggctggacatcaagcggaagctgaccgcccggtcagaccgggtgaagagt
gccgacctgcaccccaccgagccctggatggtggcgagcctctacagcggcaccgtggtg
gtctggaaccacgagacgcagatgatggtgaaaaccttcgagctgtgtgacctgcccgtc
agagtggccaagttcgtggccaggaagcactgggtggtcgccggagcagacgacatgcag
atccgcgtgttcaactacaacacgctggagcgggtccacatgttcgaggcccacgccgac
tacatccgctccatcgtggtgcacccgacgcagccctacatcctcacgagcagcgacgac
atgttgatcaagctgtgggactgggacaggaagtggtcgtgcagtcaggtgtttgaggga
cacactcactacgtcatgcagatcgtcatcaaccccaaagacaacaaccagttcgccagc
gcctctctggaccgaaccgttaaggtgtggcagctgggctccaggacccccaacttcacc
ctggagggccacgagaagggggtgaactgcatcgactactacggcgggggggacaagccg
tacctcatatcgggggccgacgaccgcctggtgaagatctgggattaccagaacaaaacc
tgtgtccagaccctggagggtcacgcccagaacgtgacctgcgtctgtttccacccggag
ctgccgatcatcctcacgggctccgaggacggcaccgtgcgagtgtggcactccaacacc
taccggctggagaacacgctcaactacggcatggagcgggtgtggtgcatctgcagccag
cccggctccaacagcgtggccctgggctacgacgaaggcagcatcatcatcaagctgggc
cgcgaggagccggccatgtccatggacgccagcgggaaggtcatgtgggctcgccactcc
gaggtgcagcaggccaacctgaagtccatgggcggggccgaggtccgggacggcgagcgg
ctgccgctcggcgtcaaggacatgggcagctgtgagatcttcccccagaccatccagcac
agccccaacgggaggttcgtggtggtgtgcggcgacggggagtacatcatcttcaccgcc
atggcgctgaggaacaagagcttcggctcggctcaggagttcgtctgggcccacgactcg
tctcaatacgccacgagggagagcagcagcatgatcaagatattcaagaacttcaaagag
aagaaggctttcaaacccgacttcggggccgaaggtgtgtttggaggcttcctattgggc
gtgaggtcaaacagcggcctggccttctacgactgggagaacgccgacctcgtccgccgc
atcgagatccagcccaaacacgtcttctggtcggactccggcgagctggtgtgcatcggc
accgacgagtcgttcttcgtgctgcgctacctgccggagcgcgtggcggcggccgcggag
tccaaggaggagatcacggaggacgggatcgagggcgccttcgaggtgctgggcgaggtc
ccgggggtcgtgaagaccggcgtgtgggtgggagactgcttcatctacaccagctcgctc
aaccggctcaactactacgtcggcggagagatcatcaccatcgctcacctggacaggacg
atgtacctgctgggctacatccccaaagacgaccgtctgtacctgggcgacaaggagctg
aacgtggtcagctactcgctgctgctgtcggtgctggagtaccagacggccgtcatgagg
cgggacttcggcacggccgacaaggtgctgcccaccgtgcccaaggagcagaggacccgc
gtcgccaacttcctggagaagcagggcttcagggagcaggcgctggccgtgtccaccgac
ccggagcaccggttcgagctggccctgcagctgggagagctcacgctggcccacgagctg
gcctcggaggcagagtcggagcacaagtggaagcagctggccgagctcgccacggccaag
tgccgcttcggcctggcccaggagtgcctgcaccaggcgcaggactacggggggctgctg
ctgctcgccacggcctcggggaacgccgccatggtggacaagctggccgagggggcggag
cgcagcggcaagacaaacgtggccttcctcacctgcttcctgcagggaagaatggacaaa
tgtctgcagctgctcatcgacaccaaccggctgcccgaggccgccttcctggcacggacg
tacctgcccagccacgtgtcacgggtggtgaagctgtggaaggagagtctgtccaaggtc
aaccagaaggcggcggacgcgctggccgacccgtcccagtacagcaacctgttcccgggc
ctccagcaggccctgctggccgaggactacctgaaggagacccacgtcggggtccggccc
gcggcggagtacccgctggtcacgcccaacgaggcccgtgacgttctgaaggagagcgag
ggctttgaggccagaggagagcccgccgggtccgagggagggggggacgccgtcaatgaa
gccgtcacggtggcggcggaacccattctcctaaaacaggagatggttgatcctgttgca
gaagaagaagaagaagagtccatcccaatggaggccgccgcccctctgcctgtcacagtc
acagaggattctgcatctttagaggaggaggaggaggaggcgttgatctctgtagaggtc
ccgggcctgagccccgagccactggttccgctccaggtgccggcgccggaacacaccgca
gcactcccggtggagccggaggaccacccgaagccggcagtggctctacaggcggagcca
gaggggagcacagcgggggaggagggggcgggacctaaaggggcggagcaaccggcagag
gctgttgagcacgatgagatcctggatgatctggatctggacaattttgacctggaagac
atcgacaccgccgacatcaacctggacgacgagttcagtgactag
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integrated database retrieval system
