Pseudoliparis swirei (Mariana hadal snailfish): 130210635
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Entry
130210635 CDS
T09868
Symbol
farsb
Name
(RefSeq) phenylalanine--tRNA ligase beta subunit isoform X1
KO
K01890
phenylalanyl-tRNA synthetase beta chain [EC:
6.1.1.20
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
130210635 (farsb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pswi01007
]
130210635 (farsb)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pswi03016
]
130210635 (farsb)
Enzymes [BR:
pswi01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.20 phenylalanine---tRNA ligase
130210635 (farsb)
Amino acid related enzymes [BR:
pswi01007
]
Aminoacyl-tRNA synthetase
Class II (U)
130210635 (farsb)
Transfer RNA biogenesis [BR:
pswi03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
130210635 (farsb)
Prokaryotic type
130210635 (farsb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_synthFbeta
PhetRS_B1
B5
B3_4
Arc1p_N_like
EAD7
Motif
Other DBs
NCBI-GeneID:
130210635
NCBI-ProteinID:
XP_056297064
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All DBs
Position
20:2839717..2852853
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AA seq
704 aa
AA seq
DB search
MPTVGVKRDLLFKALGRTYTDVEFDELCFEFGLELDEITSEKEIISREQGDCKASGASDI
ILYKIDVPANRYDLLCLEGLVRGLQVFKNKLEAPRYRRVGPVSGEPQRLIITTETAAVRP
HAVAAVLRNITFTQERYDSFIELQDKLHQNVCRKRSLVAIGTHDLDTVCGPFTYTAKPPA
DIRFKPLNQAQEYSAVQLMSLYKADSHLKHFLHIIEDAPAYPVIYDSRGVVLSMPPIING
DHSKISMNTKNVFVECTATDLTKAKIVLDVIVTMFSEYCAEPFTVEEAEVVYPDGKICKY
PELAYRKEKVSSGFINRKVGINESTDTIARLLTRMCLRSEVTGVGDEIEVEIPPTRSDVI
HACDIVEDAAMAYGFNNIPYTTPGTYTIANQFPINKLTELLRQDLAAAGFTEALTFALCS
KEDISDKLGKKISETGAVHIANPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISD
VVLKDETKDVGARNSRRFCAAYYNKSPGFEVIHGLLDRTMQLLAVKPGRGDAGYHIQASD
DSTFFPGRCAEIFVRGQSVGRLGVLHPDVIGRFELTMPCSALEMELEPFLGRTAETALAH
DVPMQEVAKHRPPAPPAPPTRTVFGDVSSPAGLEALDRFLADRSYLEGFAASRADTAVFD
AIPAAAAPAALRHLARWYNHIKSFQGERARLPAARGRFVLEDDD
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgccgacagtcggagtgaaaagggatcttctcttcaaagctttgggcagaacatacacc
gacgtggagtttgacgagctgtgctttgaatttgggctggagttggatgaaattacctcg
gagaaggagataatcagccgggagcagggcgactgcaaggcgtcgggggcgtccgacatc
atcctctacaagatcgatgtcccggcgaaccgctacgacctgctgtgtctggaggggctg
gtccgaggactgcaggtcttcaagaacaagttggaggcgccgcgctacagacgcgtcggc
ccagtcagcggggagccccagaggctgatcatcaccacggagacggcggcagtgcgaccc
cacgccgtggcagcggtgttgaggaacatcaccttcacacaggagcgctacgacagcttc
atcgagctgcaggataaactgcaccagaacgtctgcaggaagaggagcctggtggccatc
ggcactcacgacctggacaccgtctgcggtccgttcacgtacacggccaaaccgccggcc
gacatccgcttcaagcccctcaaccaggcccaggagtacagcgccgtgcagctcatgagc
ctctacaaggccgacagccacctgaagcacttcctgcacatcatcgaggacgcgcccgcg
taccccgtcatctacgacagccgcggcgtggtgctgtccatgccgcccatcatcaacggt
gaccattcaaagatctccatgaatacgaagaacgtctttgtggagtgcacggccaccgac
ctcaccaaggccaagatcgtgctggacgtgatagtgaccatgttcagcgagtactgcgcg
gagccgttcacggtggaggaggccgaggtcgtctacccagacggaaagatctgcaaatac
ccagagctggcgtacaggaaggagaaagtgtccagtgggttcatcaaccggaaagtcggc
atcaacgagtcgaccgacaccatcgcccggctgctcaccaggatgtgcctccgctccgag
gtcacgggggtcggcgacgagatcgaggtggagatcccgcccacgcgctccgacgtcatc
cacgcctgcgacatcgtggaggacgccgccatggcctacgggttcaacaacatcccctac
accacgccgggcacctacaccatcgccaaccagttcccgatcaataaactgacggagctg
ctgagacaagacctggcagccgctggcttcacggaggccctcaccttcgccctgtgttct
aaagaagatatcagtgacaagctgggaaagaagatctcagagaccggagcggttcacatc
gcaaaccccaagacagctgagttccaggtggcgcgcaccaccttgctgcccggcctgctg
aagaccatcgctgccaaccggaagatgcccctccccctcaaactgttcgagatctccgac
gtggtgctgaaggacgagaccaaagacgtcggggcgagaaacagccggcgtttctgcgcc
gcctactacaacaagagcccgggcttcgaggtgatccacggcctgctggaccgcaccatg
cagctgctggcggtgaagccgggccgcggggacgccgggtaccacatccaggcctcggac
gattccacctttttccccggtcgctgcgcggagatctttgtgcgcgggcagagcgtggga
cgcctcggggtcctgcacccggacgtcatcggccgcttcgagctgacgatgccgtgctcg
gccctggagatggagctggagcccttcctcggccgcaccgccgaaaccgcccttgcacac
gacgtccccatgcaggaagtggccaagcacaggccgcccgccccgccggcgccgcccacg
cgcaccgtcttcggggacgtgagctcgccggccggcctcgaggcgctcgaccgcttcctg
gcggacagaagctacctggagggcttcgcggcgtcccgggccgacacggcggtgttcgac
gccatccccgccgccgccgcgcccgccgccctccgccacctcgcccgctggtacaaccac
atcaagtccttccagggggagagggcccgcctcccggcggcgaggggccgcttcgtcctc
gaggacgacgactga
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