Pseudoliparis swirei (Mariana hadal snailfish): 130210667
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Entry
130210667 CDS
T09868
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03030
DNA replication
pswi03420
Nucleotide excision repair
pswi03430
Mismatch repair
pswi03440
Homologous recombination
pswi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130210667 (rpa1)
03420 Nucleotide excision repair
130210667 (rpa1)
03430 Mismatch repair
130210667 (rpa1)
03440 Homologous recombination
130210667 (rpa1)
03460 Fanconi anemia pathway
130210667 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130210667 (rpa1)
03032 DNA replication proteins [BR:
pswi03032
]
130210667 (rpa1)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130210667 (rpa1)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
130210667 (rpa1)
DNA replication proteins [BR:
pswi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
130210667 (rpa1)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
130210667 (rpa1)
MMR (mismatch excision repair)
130210667 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
130210667 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
Pox_vIL-18BP
DUF223
Motif
Other DBs
NCBI-GeneID:
130210667
NCBI-ProteinID:
XP_056297124
LinkDB
All DBs
Position
20:17945699..17969863
Genome browser
AA seq
600 aa
AA seq
DB search
MTNLSEGAIEALSNGIGGNDAVLQLVNLRKIDSGSGPTRFRVMMSDGLHTLSSFMLSTQL
NFMAEENLLAPNCICILKKHVTNILKDKRRVVIILEIEVIKPAKDVAGRIGDPTPFAEGQ
VKGPQSAPNPETRQPLQQQLKNEAGNKGFNRDRDFGKKTPSATPSTPGGSSKVVPIISLN
PYQSKWTIRARVTNKSSIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFFSLVEV
GKVYYVSKGSLKIANKQYTSVKNDYEMTLSGESTIIPCEDSRDVPVMQCDFVSIGDLENR
EKDAIVDVIGVCKSVDELTRLTTKANKEVSKRTLNLMDMSGKLVTVTLWGEEAEKFDGSG
QPIIAIKGAKLSDYGGRSLSASFSSTLMINPDIPEAYKLRGWFDKEGHALEGQSLTEAKG
SGGVTNWKTLSDVKMEHLGHGDKADYYTCIATIVYLRKENCLYQACPSQDCNKKVVDQQN
GMFRCEKCDKEFPNFKYRLILSANIADYADNQWVTCFQESAEAILGQNAAYLGQLKDSNE
VAFDEVFQQANFNTFIFRSRVKLETYNDESRIKATVMDVKPVDHKDYSKRLIQNIRKLAA
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgacgaacctctcagagggtgcgatagaggctctatcaaatggcattggtggtaacgat
gcagtgcttcagttggtgaaccttcgcaaaattgacagtggaagtggtcctactcgcttt
cgggtgatgatgagtgatggactgcacactctgtcctccttcatgctctcaacgcagctg
aacttcatggctgaggagaacctcctggcgcccaactgcatctgcattctaaagaagcac
gtgaccaatatactgaaggacaaacgacgggtggtgatcattttagaaattgaagtcatc
aagcctgctaaagatgttgctggaagaataggtgaccctactccttttgctgagggtcag
gtcaaaggcccgcagtcggcaccaaaccctgaaacccggcaaccactacagcagcaatta
aaaaatgaagcagggaacaaaggtttcaatagggatagggactttgggaaaaagacccca
tctgctacgcccagtactccagggggcagctctaaagttgtgcccatcatcagcctcaac
ccctatcagtccaagtggaccatccgcgctcgtgtaaccaacaagagcagcatccgtaca
tggagcaactctcgtggtgatggcaaactcttctccatggagattgtggatgagagtggc
gagatcagagtgactggttttaaccaagaggtggacaagttcttcagcctggttgaggtt
ggcaaggtctactacgtctccaagggctccctgaagatcgccaacaagcagtacacatcg
gtgaagaacgactatgagatgactctcagtggagaatccacgattatcccgtgtgaagac
agccgtgatgttccggtgatgcagtgtgacttcgtctctattggtgacctggaaaaccga
gaaaaagatgccatcgttgatgtgattggagtgtgtaagagtgtggacgaattgacccgc
ctcaccaccaaggcaaacaaggaagtgtccaagaggacactcaacttgatggacatgtct
gggaagttggtgacggtcacgctgtggggagaggaagcagaaaagtttgatgggtccgga
cagcccatcatagccataaagggggcgaagctttcggactatggtggccggtccctctcg
gcgtccttcagcagcaccctgatgatcaacccagacatccctgaggcttataagctcaga
ggctggtttgacaaggagggccacgccctggaaggacagtctttgacggaggcgaaaggc
agcgggggagtcaccaactggaagactctgtcggatgttaagatggagcacctgggacat
ggagacaaggcggactactacacctgcatagctaccatagtatacctgcgcaaggaaaac
tgcctttaccaggcctgtcccagccaagactgcaacaaaaaagtggtggaccagcaaaat
ggcatgttccgctgcgaaaagtgtgacaaagagttcccgaacttcaagtatcgcctcatc
ctttctgccaacattgcagattacgcggacaaccagtgggtcacttgcttccaggagagt
gccgaggccatcctcggccagaatgcagcttacctggggcagctcaaggactcgaacgaa
gtcgcctttgacgaggtcttccaacaagccaatttcaacacttttattttccgaagcaga
gtgaagctagaaacgtataacgatgaatccaggatcaaggcgacggtgatggacgtgaag
cccgtcgaccataaggactacagcaagaggttgatccagaacatcaggaaactggctgct
tag
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