Pseudoliparis swirei (Mariana hadal snailfish): 130210839
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Entry
130210839 CDS
T09868
Symbol
smfn
Name
(RefSeq) small fragment nuclease isoform X1
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
130210839 (smfn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130210839 (smfn)
03009 Ribosome biogenesis [BR:
pswi03009
]
130210839 (smfn)
Messenger RNA biogenesis [BR:
pswi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
130210839 (smfn)
Ribosome biogenesis [BR:
pswi03009
]
Eukaryotic type
Pre-60S particles
RNases
130210839 (smfn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-GeneID:
130210839
NCBI-ProteinID:
XP_056297306
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Position
3:16836436..16845957
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AA seq
269 aa
AA seq
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MPSCSQTSACGLIILDVLWRRRLRSLPHSKAAFHSYCSGVFSKCVPFSREINPFTSRLGS
RADIQMSRQIHMSSIAMSQRMVWVDLEMTGLDIEKDQIIEMACIITDSDLNILAEGPNLI
INQPNKLLEGMSEWCKEHHGKSGLTQAVKDSKITLEQAEYEFLSFVRQHTPPGPCPLAGN
SVHADKRFLDKHMPQFMHHLHYRIVDVSTIKELCRRWFPEEYKMVPHKKAAHRALNDIQE
SIKELQYYRANVFKASEEKKPKIVENRDF
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgccatcgtgctcgcaaacttcggcatgtggtcttattattttggatgttctctggaga
cggagactgcgttcccttccgcacagcaaggcggcctttcattcatactgcagtggagtt
ttttccaaatgtgtaccgtttagccgtgaaataaacccattcacttccagactcggttca
agagctgacattcagatgtctagacaaatacacatgtcgtccatcgccatgtctcagagg
atggtttgggtggacctcgagatgacagggctggacattgagaaggaccagatcattgag
atggcctgcattatcacagactctgaccttaacattttagctgagggtcccaacttgatc
atcaaccagccaaataagcttcttgaaggaatgtctgagtggtgtaaagagcatcatgga
aagtcaggacttacgcaggctgtaaaggacagtaaaatcaccctggaacaagctgagtat
gagttcctgtcctttgtcagacagcacaccccacctggaccgtgtcccctcgccggtaac
tctgtgcatgcggacaagaggttcctggacaagcacatgccacagtttatgcatcacctt
cactacagaatcgttgatgttagcaccattaaggagctttgcagacggtggtttcctgag
gaatacaaaatggtgcctcacaagaaagcagcccacagagccttgaatgacatccaggag
agcattaaagagctgcagtactacagagccaacgtctttaaagcctcagaggagaagaag
cccaagattgtggaaaaccgcgacttttga
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