Pseudoliparis swirei (Mariana hadal snailfish): 130210983
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Entry
130210983 CDS
T09868
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
130210983 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130210983 (lig3)
Enzymes [BR:
pswi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
130210983 (lig3)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
130210983 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
BRCT_2
FAD_binding_1
Motif
Other DBs
NCBI-GeneID:
130210983
NCBI-ProteinID:
XP_056297516
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All DBs
Position
3:22712741..22737318
Genome browser
AA seq
996 aa
AA seq
DB search
MHRPLVLSAHKTIRVGLQRHDLRRACRALSVAPCFKPPSPAAHALHLCFSSAPRLLRLAL
HRRFSDMAEQRFIVEYAKRGTAGCKKCKDKIPKEVVRIGKVVPNPFSESAGEMKEWYHVK
CIFEKLEKARATTKKIEDITDLDGWEELEDQDKDIINKHVSDLMAKVNAAPKKKTPVKTN
TSGHLPAPPADPSVNAPRKFSGFTATKAGGSGSPAPSSPSANGSPLSVQLCDPQHKDCLF
REFRKLCATVAEHNSYNVKTQIIEKFLKKGSAGDKFHGDLYLTVKMLLPGVVKSVYNLND
KQIVKLFSRIFRSNQDDMVRDLEQGDVSETVRIFFEESKSFPAATKSLLTIQEVDASLVR
LAQLTKEDEQQTELEEISKKCTSNDLKCIVRLIKHDLKMNSGAKHVLDAVDPNAYDAFKA
SRNLGDVLERVLRNQQDSPSGSGPKKLLSVEASLMTPVQPMLAEACKSIEYAMKKCPNGM
YSEIKYDGERVQVHKNGDVFSYFSRSLKPVLPHKVAHFKEFIPQAFAGGHSMILDAEVLL
IDTNTSKPLPFGTLGVHKKAAFHDAKVCLFVFDCIYFNGVSLMERPLSERRKFLHDNMVE
VKDRILFSEMKHVTRAGDLAEMITRVIREGLEGLVLKDLKGTYEPGKRHWLKVKKDYLNE
GAMADTADLVVLGAFYGKGSNGGIMSSFLMGCFDPHSKKWCTVTKCSGGYDDATLARLQK
ELDVIKISKEPSKIPGWLKIIKNYYPDFIIRDPQKAPVWEITGAEFSKSEMHTADGISIR
FPRMTRIRDDKDWKTATNLSQLKELFRISKENCDFQVTAGPSATAHDKSSSGGDSGGSSP
TPPTRRPPPKKTNITPKTKVVKSEPRSPGSEAPSAKKVKSESVQRQVKSESVQRQVKSES
SNGQTKPTSKLLEPRNDPTLLDIFSGVKLFLPVSLQDVDKLRRYFVAYDGDVVPDYGASS
ATHTLAAAEDAGHEAQRVSPAWVWECIRKRRLVPAC
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgcatcgaccactggtcttatcagcacataagacgatccgtgtcggcctccagcgccac
gacctccggagagcgtgccgagccctctccgtcgccccgtgcttcaaacctccatcgcca
gctgctcacgcgctccacttgtgtttctcctcggcacccagactcctgcggctcgccctc
caccggcgtttctccgacatggcggagcagaggttcatcgtggagtacgccaagcgcggc
accgcggggtgcaagaagtgcaaggacaaaatcccaaaggaggtggtgcgcatcgggaag
gtggtgcccaaccccttcagcgagtctgcgggcgagatgaaggagtggtatcacgtgaag
tgcatcttcgagaagctggagaaggcgagagccaccaccaagaagatcgaggacatcacg
gacctggatggctgggaggagctggaggaccaagacaaagacatcattaataaacacgtc
tcggacctgatggccaaagtcaacgccgctccgaagaagaagacgccggtcaagacgaac
acctccggtcacctcccggctcctcccgctgacccgtccgtcaacgcgccgcggaagttc
tcgggcttcaccgctacgaaggccggcggctccggcagcccggcaccgtcctctccctcg
gccaatggcagccccctgtccgtccagctgtgcgacccccagcacaaggactgcctcttc
cgagagtttcgcaagctctgcgccacggtggccgagcacaacagctacaacgtcaagacg
cagatcatcgagaagttcctcaagaagggctcggccggagataaattccacggagacctt
tacctcacggtgaagatgctgctgcccggcgtcgtgaagagcgtctacaacctcaacgac
aagcagatcgtgaagctcttcagccgcatcttccggagcaaccaggacgacatggtgcgc
gacctggagcagggcgacgtgtctgaaacggtgaggatattcttcgaggagagcaagtcg
ttcccggcggcgaccaagagcctgctgaccatccaggaagtggacgcgtcgctcgtccgc
ctcgcccagctgaccaaggaggacgagcagcagacggagttggaggaaatctccaaaaag
tgcaccagtaacgacctgaagtgcatcgtccggctcatcaaacacgacttgaagatgaac
tccggagcgaaacacgtcttggacgccgtggacccgaacgcgtacgacgccttcaaggcc
tcgcgtaacctgggcgacgtgctggagcgcgtgctgaggaaccagcaggactcgcccagc
ggctcggggcccaagaagctcctctccgtggaggcctcgctcatgacccccgtgcagccc
atgctggcggaggcgtgtaagtccatcgagtacgccatgaagaagtgccccaacgggatg
tactccgagatcaagtacgacggggagcgggtgcaagtccacaagaacggcgacgtgttc
agctacttcagccgcagcctgaagcccgtgttgcctcacaaggtggcccatttcaaggag
ttcatccctcaggcgttcgccgggggccacagcatgatcctggacgccgaggtcctcctg
atcgacaccaacaccagtaagcccctcccctttgggacgctgggggtccacaagaaagcc
gccttccatgatgccaaagtttgcctgtttgtgttcgactgcatctacttcaacggcgtg
agcctcatggagaggccgctgtctgaacgcaggaagttcctgcacgacaacatggtggag
gtgaaggaccgcatcctgttctcagagatgaaacacgtcaccagggcaggagacctggct
gaaatgataactcgagtcatcagagagggacttgaaggcctcgtgctaaaagacttgaag
ggcacctatgaaccggggaagcgccactggctgaaggtgaagaaggactatctgaacgaa
ggcgccatggcggacacggccgacctggtggtgctcggggccttctatggaaaaggctcc
aacgggggcatcatgtccagcttcctcatgggctgcttcgacccgcactccaagaagtgg
tgcaccgtcaccaagtgctccggcggctacgacgacgccacgctggcccgcctccagaag
gagctggacgtcatcaaaatcagcaaggagccaagcaagatccccggctggctgaaaatc
atcaagaactattatcctgatttcatcatccgtgatcctcagaaggctccggtctgggag
atcaccggcgccgagttctccaaatccgagatgcacacggcggacggcatctccatccgc
ttcccgcgcatgacgcgcatccgcgacgacaaggactggaagaccgccaccaacctgagc
cagctcaaggagctgttccgcatctcgaaggagaactgtgacttccaggtgacggccggc
ccgtcggcgacggcccacgacaagagctcctcggggggggacagcggaggaagctccccg
acccccccgacccgcaggcctccacccaagaagaccaacatcacgcccaaaactaaggtg
gtgaaatctgagcctcgcagtcctggctcagaagcaccgagtgctaagaaggtgaagagt
gagagcgtccagcgtcaggtgaagagtgagagcgtccagcgtcaggtgaagagtgagagc
agtaacggacaaacgaagccaacgtccaaactactggagccacgaaatgacccgacgctg
ctggacatcttcagcggcgtgaagctcttcctgcccgtctccctgcaggacgtcgacaaa
ctgcgccgctacttcgtggcgtacgacggcgacgtcgtccccgactacggcgcctcctcc
gccacgcacacgctggccgccgccgaggacgccggccacgaggcccagagggtgtcgccc
gcctgggtctgggagtgcatccgcaagcggcggctggttcccgcctgctag
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