Pseudoliparis swirei (Mariana hadal snailfish): 130210993
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Entry
130210993 CDS
T09868
Symbol
arhgef12a
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04270
Vascular smooth muscle contraction
pswi04625
C-type lectin receptor signaling pathway
pswi04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
130210993 (arhgef12a)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
130210993 (arhgef12a)
09153 Circulatory system
04270 Vascular smooth muscle contraction
130210993 (arhgef12a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130210993 (arhgef12a)
Membrane trafficking [BR:
pswi04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
130210993 (arhgef12a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
PH_13
SOS1_NGEF_PH
PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
130210993
NCBI-ProteinID:
XP_056297534
LinkDB
All DBs
Position
20:24876832..24918819
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AA seq
1441 aa
AA seq
DB search
MSDTQSSFTDRFPKKENRTSSILSKDHPPDRKPKCDKTSLPSNEFDPTEALVVQRSGSGR
VLAEGRPESCGLVQRCVIIQKDEHGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIK
VNGTLVTHSNHIEVVKLIKSGSYVALTVLGRPPGLAQIPLSEAESEMLGVSISSPNSPAA
ERPYSALERLSFPPPPWVPTTDENSGVCSQRVDMLQKMLSKEQQELQAMKEEYSRNPSPK
LLKDIQEAKKHIPQLQGQLLKATGATQEAVPGGDADDGSMLEAQHSRGDTSADLSWSSSP
LSRGYGPGSPESLYPREPCYPSPKITPRNSVNSCHSPEADDAADQDSLSPTTVSSPSSAR
LVSQIIGAEDDYFDSDQEQTNGQCNSFNNIEQLKSRPAHLAAFLHHVISQFDPAPVLCYL
YADFYKQTNSKETRRVFMDLHNFFIDRGANLKVAVPESISTDLDRRRTELIPEEINRQHV
QTLQDSLLPDLQKNLEDFRQKRSMGLTVAEVELSRLDQERVRDRVALERERSYAENIITK
IEEVLLTTQNTEEERCTTMQYVIYTYMKHLGVRVKEPRSLESKRVRINFLPKIKKSIKAE
KEGEEKVKKPRFPSILGPQRRPSRIEAASVGKALDGRPRPQKQLSQPSLGASDHTDAGRL
RSSQSSEGSELMHSMSTNASTPNSAAYGSDAGRDADMGGTPTSGPSRLSDGLQADPLDGL
LYPASHFDLYNLDQLQEDDRESDRAHEGTPKVIRRLEGPGAADVQSEDDQGTDSEHDPPN
WQQLVGREVLAGLRPQEIKRQEVINELFYTERAHVRMLRVLDHVFYQKLSKEAILPPADI
KNIFSNLDEILQLHASVLEQMAAVRKRNESSVIDQIGDDLLSWFSDGEEEKIKKAVGTFC
SNQPFALEIIKTKQKKDSRFTSFVQEAESNRQCRRLQLKDIIPVEMQRLTKYPLLLDNIA
KYTDNAVEKDKVKQAADGCRKILNHVNQAVKESEDKQRLEDYQRRLDLSSLKQTDNPMIL
ELKNLDLTKRTLVHEGPLSWKVNKDKTIELYTLLLQDILVLLQKQDERLILKCHSKNLAG
PADTKHIFSPVIKLSTVLVRSVATDNKSFFVICMSDNGAQIYELMAPTVSDQRTWQHLIT
QRADAMKVKPHSVIPLPQTDGERDGVEIITAGVSRLSRDPDRTSTGSTQSSDKESSPAPR
SATQSSLPSNNPFEGIKAEEEDEEEEEEGFVDPELPYRAAKDGKGGDSFNVFPSRADEAL
KTLAALKQVLVTQLMSQEALEQTKRSTGVRLLRTTSLRTPVDSRARVPVHNGAHTEDPAQ
DLGSGDTGFFDSPEDDAGFLVLEGYGGPGESSTDDDILASAGGKQLRSSRGCAADSGINL
RFSTASQAGSLSSFSRRVLSHLRNLQANLNYLKDVEAKYNNLIRQRPERSAADADGNKDK
R
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacacacagtccagcttcactgacaggtttcccaagaaagaaaaccgaaccagc
agcattctcagtaaagaccacccccccgacaggaaacccaaatgtgacaaaacctcactt
ccctccaatgagtttgaccctacagaagctctggtggtgcagaggagtggcagcggccgt
gtgctcgcagaggggaggcccgagtcctgcggtctggttcagcgatgtgtaatcatccag
aaagatgaacacggctttgggctcacggtcagcggtgacaacccggtgttcgtgcaactc
gtcaaagaagatggggcggccatgcgggcgggagttcagacaggagataggatcatcaag
gttaacgggacccttgttacacattcaaatcacatcgaggtggtgaaacttatcaaatcg
ggctcctatgtggccctcacggtgttggggcgtcccccagggctcgcccagatccctctg
tctgaagccgagtccgaaatgttgggggttagcatttcgtctcccaactccccggcagca
gaacggccctacagcgctctggagcgcctctccttcccgccaccaccatgggtaccaacc
acagatgagaatagcggcgtctgcagccagagggtcgacatgctgcagaagatgctctcc
aaagagcagcaggagctacaggccatgaaggaggagtacagcaggaacccctcccccaaa
ctactgaaagacatccaggaagctaagaaacacattccacagctgcagggtcagctcctc
aaggccaccggggcaacgcaggaggctgttcccggtggcgatgcagacgacggtagcatg
ttggaggcgcagcactccagaggagacaccagtgcagacctgtcctggagcagctctcct
ctttctcgcggatatgggcccggatctccagagagcctctacccaagagagccgtgctac
ccgagcccaaagatcaccccgaggaacagcgtcaactcctgccactctccggaggccgac
gacgccgctgaccaggactctctgtctcccaccacggtcagcagtccctcttccgcccgc
ctcgtctctcaaatcatcggagccgaggacgactacttcgactcggaccaggagcagaca
aacggccagtgcaacagcttcaacaacatcgagcagctcaagtctcgtcccgcgcacctc
gcggccttcctccaccacgtcatctctcagttcgaccctgcccccgtgctgtgctacctc
tacgctgacttctacaagcagaccaactccaaagagaccaggcgggtgttcatggacctg
cacaacttcttcattgaccgcggagcaaatttgaaagtcgctgtccccgaatccatctcc
actgatctcgaccgtcggcggacagaactgatccctgaggaaataaaccgacaacatgtt
cagacgctgcaggactctctgctccctgacttgcagaagaacctcgaggatttcaggcag
aagcgcagcatgggcctcacggtggctgaggtggagctgtccaggctggaccaagagaga
gtccgagaccgcgtcgctctggagagagagcgctcgtacgcggaaaacatcatcaccaag
atcgaggaggtcctgttaacgactcagaacacagaggaagagagatgcactacgatgcag
tacgtcatctacacgtacatgaagcacctcggggtgcgggtcaaggagccgcggagtctg
gagtccaagcgtgtccggatcaacttccttcccaagatcaagaaaagcatcaaggcggag
aaggaaggagaggagaaggtgaagaaacccagatttcccagcatcctcggacctcagcgt
cggcccagccgcatcgaagcggcgtctgtcggcaaagccttggacggtcgcccgcggcca
cagaagcagttgtctcagccgtcactcggggcgagcgatcacacggacgccgggcgtctc
cgaagcagccagtcgagcgagggctcggaactcatgcactccatgtcgaccaacgcctcg
accccgaacagcgccgcctacggctcggacgccggccgagacgccgacatgggcgggact
ccgacctcgggcccgtcccggctgagtgacggcctccaggccgaccccctcgatgggttg
ctgtaccccgcgtcgcactttgacctttacaacctggaccaactgcaggaggacgacaga
gaaagcgacagagcccacgagggaacaccaaaggtcataagaaggctggagggcccggga
gcggccgacgtccagagcgaggacgaccagggaaccgactcggagcacgaccctcccaac
tggcagcagctggtgggccgagaggtcctcgcgggcctcaggcctcaggaaatcaagaga
caggaagtcatcaacgagctgttctacaccgagcgtgcgcacgtgaggatgctgagggtt
ctggaccacgtgttctaccagaagctctccaaagaggccatcctgcctcccgccgacatc
aagaacatcttcagcaacctggacgagattctacagctgcatgcctcagttctggagcag
atggccgccgtccggaagagaaacgagtcgtcggtaattgatcagataggagacgacttg
ctctcctggttcagtgacggcgaggaggagaagatcaagaaggcggtggggacgttctgc
agcaatcagccgtttgctctcgagatcatcaaaaccaagcagaagaaggactcgcggttc
acgtcgttcgtccaggaggcagaaagcaacaggcagtgtcgccggctgcagctgaaggac
atcattcctgtggagatgcagcggctcaccaagtacccgctgctcctggacaacatcgcc
aagtacacagacaacgccgtggagaaggacaaagtgaagcaggcggcggacggctgccgg
aagattctcaaccacgtcaaccaggccgtcaaagagtccgaggacaagcagaggttggag
gactaccagaggagactggacctctcttctctgaagcagacggacaaccccatgatcctg
gagctcaagaacttggatttgaccaagaggacgctggtgcacgaggggcctctgtcgtgg
aaagtgaacaaggacaagacgattgagctgtacaccctcctgctgcaggacatcttggtt
ctgctccagaaacaagacgagcgcctcatcctgaagtgtcacagtaagaacctggcgggc
cccgcggataccaagcacatcttcagccccgtcatcaagctcagcacggtgctggtgcgc
tcggtggccacagacaacaagtccttcttcgtcatctgcatgtcggacaacggcgcccag
atctatgagctgatggcgcccaccgtctcagatcagagaacgtggcagcatctaatcact
cagagagccgacgccatgaaagtcaagcctcacagcgtcatcccgttacctcagaccgat
ggggagagagacggggtggagatcatcacggcgggcgtgtccaggctgagtcgagacccg
gaccgcacgtccaccggcagcacccagtcctcagataaagagagcagcccggccccgagg
agcgcgacgcagagctccctacccagcaataatccattcgagggaataaaggcggaggag
gaagacgaggaggaggaggaggaaggtttcgtggacccggagcttccttatcgggcggcg
aaagacggcaaaggaggagactcgttcaacgtgttcccctccagagcggacgaagctctg
aaaacactggcggcgttgaagcaggtgttggtgacccagctgatgtcccaggaggcgttg
gagcaaaccaagcgctccacgggggtccgcctcctcaggaccacgtctctgcgcacgccc
gtcgacagccgcgcccgcgtgccggtccacaacggcgcccacaccgaggaccccgctcag
gacctgggctccggggacacgggcttcttcgactctccggaggatgacgcagggttcttg
gttctggaggggtacggcggcccgggggagagcagcaccgacgacgacatcctggcgtcg
gccggcgggaagcagctgcggtcgtctcggggctgcgccgccgactccggcatcaacctg
cgcttctccacggcgtcgcaggccggcagcctctcctcgttcagcaggcgggttctgtcc
cacctccggaaccttcaggccaacctcaactacctgaaggatgttgaggccaagtacaat
aatctaatacgccaaaggccagagaggtcggcagcggacgcggatggaaacaaagataaa
agatag
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integrated database retrieval system
