Pseudoliparis swirei (Mariana hadal snailfish): 130210994
Help
Entry
130210994 CDS
T09868
Symbol
ube4a
Name
(RefSeq) ubiquitin conjugation factor E4 A isoform X1
KO
K10596
ubiquitin conjugation factor E4 A [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130210994 (ube4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130210994 (ube4a)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130210994 (ube4a)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
U-box type E3
130210994 (ube4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
bHLH_SAC51
Motif
Other DBs
NCBI-GeneID:
130210994
NCBI-ProteinID:
XP_056297541
LinkDB
All DBs
Position
20:complement(25481755..25497060)
Genome browser
AA seq
1082 aa
AA seq
DB search
MTDQGNSNQNISRNPFAALFSSLADAKQFASGQKPEQSAGPPLEDSEDSRSESENSVSDS
VDDNDDSVAEIGRSFRSRQELCEQLNVNHMIQRVFLITLDNSDPSLRGGNGIPLRCVYLE
EMAPDLDGQDWLDMDNIEQALFNRLLVPEPGNHLIYMTSCSAVNLSADRDSGEKCVIPYL
FACYQRAKEEVFGFSSKTVTKVPEKLLSFAVRCKSLTVSNMQTVLLTPEIFVSQNIHEQL
LDLLLQSLNGAQTEEVVEFVEEVVAGLLSDQEVRTFEEVMAPVFDIFQGRIKDMDLCQPL
LYSYLDVLLYFSHHKDIAKVLVEHIQPKDPSNGLQYQKTLLGTVLSISCLLKTPGVVEGH
GYFLNPSRSSAQETKVQEANIHQFMGQFHDKLHQILKNLLQGSGETRHLLLLWLGSCLQA
NAGRVKIWANQMPEIFYQMYASDAFFLNLGAALLKLCQPFCKPRSHKLLTFNPTYCALKE
LSEEERRHRNVHVTGLDKETCLIPVPPQQPVESAQSYSLLTENLILTQLTQHLGFHRLHE
QMVKMNQSLHRLQVTWQESQRTGNPMSEQLLEQFERLMIVYLSTKAATTQPAMLQCCLNL
QASTAALLVQLGMGNQGPEHVALTFPLASLQKTMLCYVPEFFAENLGDFIIFLRRFADDV
LESSAESLEQILNFITVFMGNIERMKNPHLRAKLAEVLEAVMPHMETVASGAAQPLVFQR
ERVFSSYRHAPQLAESLIAVFVDIEFTGDPHQFEQKFNYRRPMYPILKYMWDKEAYRESI
KHLAQYASENLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKVQQLERDRGEWDGLA
PEARKEKESSLQMLGQLGRFHNIMSNETIGTLAFLTSEIKGIFVHPFLAERIISMLNYFL
QHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLHLGDEENFCATVPKDGRSYAPILFS
QTVRVLKKINKPGDMIMAFGLIADKIKSHADRQQQEEETYADAPDEFLDPIMSTLMLDPV
LLPSSNVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNQELKQQILQWLDKHKQESLPP
PP
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccagggcaacagcaaccagaacatctcccgcaacccctttgctgccctcttc
agctcacttgctgacgccaagcagtttgcgtcaggccagaaaccggaacaatctgccgga
ccgccgttggaggactcagaagacagccggtcagagtcagagaactctgtgtccgacagc
gtcgatgacaatgacgactctgtggcggagatcggccgctccttccggtccaggcaggag
ctctgtgagcagctcaatgtcaatcacatgatccagagagtcttcctcatcaccctggac
aacagtgaccccagtctgagaggaggcaacgggatccccctccgctgtgtttacctggag
gagatggctcccgatctggacggacaggactggctcgacatggacaacatcgaacaggct
ctgttcaaccgtctgctggtaccggagcccggaaaccacctgatctacatgacgtcgtgc
agcgccgtgaacctgtccgctgaccgagactccggagagaaatgtgtcatcccttacctc
ttcgcctgctaccagagggccaaagaagaggtgtttggcttttcctccaagactgtgacg
aaggtaccggagaagttgctgtcgttcgccgttcgctgcaagagcctgacggtttccaac
atgcagacagttctgctcaccccggagattttcgtcagccagaatatccacgaacagctt
ctggacctgttgctgcaaagcttaaacggagcgcagacggaggaggtggtcgagtttgtg
gaggaggtcgtcgccggcctgctctctgaccaggaggtgcgcaccttcgaggaggtgatg
gcaccggtgttcgatatcttccagggacgcatcaaagacatggacctgtgccagcctctc
ctctactcgtacctggatgttctgctctatttcagccaccataaagatattgccaaggta
ttggtggaacacattcaacccaaagacccatccaatggtttgcagtaccagaaaaccctg
ctgggaacagtgttgagtatctcctgcttgttgaaaacgccaggtgtggtggagggacat
ggctacttcctgaacccctcccgctccagcgcccaggagacaaaggtgcaggaggccaac
atccaccagttcatgggtcagtttcatgacaagctgcaccagatcctgaagaatttgctc
cagggatccggtgagacgcgccatctgctgctcctgtggctgggcagctgtctgcaggcg
aacgccggccgcgtcaagatatgggccaatcagatgccggagatcttctaccagatgtac
gcctcggacgcgttcttcttgaacctgggcgccgcgctgctgaagctgtgccagcccttc
tgcaagccacggtcacacaagctgctcaccttcaaccccacgtactgcgccctcaaagag
ctgagcgaggaggagcggcgccatcgcaatgtgcacgtgacaggtctcgacaaggaaacc
tgtctgatcccggttccccctcagcagccggtggagtcggcgcagtcctacagcctgctg
actgaaaacctcatcctcacgcagctcacccagcacctcggcttccacagactccacgag
cagatggtgaagatgaaccagtctctccaccggctccaggtgacatggcaggaatcccag
cgcacgggcaaccccatgtccgagcagctcctggagcagtttgagcgcctgatgatcgtg
tacctgtcgaccaaagctgccaccacgcagcccgcgatgctgcaatgctgccttaacctc
caagcgtccacggccgccctgctggttcagctcggtatggggaaccaggggcccgaacat
gtagcgctcactttccccctggcctccttacagaagacgatgctctgctacgtaccagag
tttttcgcagagaacttgggagatttcatcatcttcctgcgtcggtttgcagacgacgtt
ttggagagttcggcagaaagtctggagcagatcctgaatttcatcaccgtcttcatgggc
aacatagagaggatgaagaatcctcatttaagagcgaagcttgccgaggtcttggaggcg
gtgatgccccacatggagacggtggcttccggcgccgctcaaccactcgtgtttcagcga
gagcgagtcttctcctcctacagacatgcgcctcagctggctgagtccctcatcgccgtg
tttgtagacattgaattcacaggtgatcctcatcagtttgaacagaaattcaactacaga
agacccatgtatcccatcctcaagtacatgtgggacaaagaagcctacagagagagtatc
aagcatttggcgcaatatgcatctgagaacctggaggccatgaacccgcctctgttcctc
cggttcctcaacttactgatgaacgacgccatctttctcctggacgaggccattcagtac
ctgagtaaaatcaaggttcagcagttggagcgcgaccgaggagagtgggacggtctggcc
cccgaggcccgaaaagagaaggagtcgagcctgcagatgttgggacagttgggacgcttc
cacaacatcatgtccaacgagaccatcggcacactggccttcctcacctcagagatcaag
gggatcttcgtgcaccccttcctggctgagaggatcatctccatgctgaattacttcctg
cagcacctggtgggtccgaagatgggcgctctcaaagtcaaggacttcagcgagtttgac
ttcaagccccagcagcttgtgtctgacatctgcaccatctacctgcacctgggcgatgag
gagaatttctgtgccacagttccaaaggacggacgctcgtacgctcccatcctcttctcc
caaacggtgcgggtactgaagaagatcaacaagcccggagacatgatcatggcttttgga
ctcattgctgataaaataaagtcccatgccgaccgccagcagcaggaagaggagacgtac
gccgacgccccggatgagttcctggaccccatcatgtccaccctgatgctcgatcccgtt
ctcctcccgtcctccaacgtcacagtggatcgctcaaccatagcgaggcatctcctcagt
gaccagacggaccctttcaaccgcagccctctcaccatggaccagatcagacccaaccag
gaactcaaacagcagatcttacagtggctggataaacacaagcaggagagtctgcccccc
cccccgtga
DBGET
integrated database retrieval system
