Pseudoliparis swirei (Mariana hadal snailfish): 130211202
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Entry
130211202 CDS
T09868
Symbol
npas1
Name
(RefSeq) neuronal PAS domain-containing protein 1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130211202 (npas1)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
130211202 (npas1)
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Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_4
PAS_9
HLH
SAGA-Tad1
Motif
Other DBs
NCBI-GeneID:
130211202
NCBI-ProteinID:
XP_056297895
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All DBs
Position
20:23533470..23596794
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AA seq
829 aa
AA seq
DB search
MATMPFVSEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLTISYLHMRTFASQGDPPWSPLMQGDSHCRKVRRSSNSRA
TDMFEQHLGAHLLQSLDGFVFVVSQEGRFLYISETVSIYLGLSQVELTGSSVFDYIHPAD
HVEMAERLGIRPHLRAEAGCHTGPESASSSASASSLAGTPEPAPSSPHSPANEPHDRGYF
IRMKSTLTKRGLHVKSSGYKVIHVTGRIRCRPALVPGSARSVRRPIGLVSLAHTLPPSSL
NEVRMESQMFVCRVNMDLQVTYCENRISEYMDLTPAEVVGHTCYHFIHVEDLENLRHSHE
DLLRKGQVVTSYYRWLQRRGGYLWIQSSATVSINHKAPHERNVIWVNYVLSRTELPDTPL
DILQLPENVRAERLRVSSSPTGSSPQARGSQPAKSSLGKSDPDTKGRDKFTPAAIQSEDR
RKRLLRSDPEGAPPETRRRLEELRPAEESVSASSDLASESEGEEEEEEEEETEWDQGGNG
DRLKEEDGGGGGKLSRGGGGGGGGGGGDTPTGGARGSRLHNGRAVIQQLKSAVAPPPLPG
SPGVKTEHAALTPGGGGGRWEPRTPAPRAHAAQPPPSHAHTPSSSLNGDSPTTPAPDSSS
SGGEAPPKGLFTPPSPALSPAVSVSSPLPREDRAAAAGSVTRSGGGGACGVPDFELLQRL
AAAGGAAGRVLFHPLALGPQGPQSLYAPSTIRYAPPDLPHHHGIEHGDGLQLRSDHHKGP
PPPPAFFPHLQRLAGLPPFSGFSPSDGPFPSGLPFCMNGLRGAAGSEED
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatgccgtttgtcagcgaggggaagtgtgtgagtgtggagtgggatttccta
caaggactactggccaagccacccacccttccctgtctccagaacctgcgtaaagagaag
tctcgcaacgcggctcgctcgcggcgggggaaggagaactttgagttctttgagttggcc
aagatgctgcctctgcccggagccatcaccagccagctggacaaggcctcggtcatccgg
ctgaccataagttacctgcacatgcgcaccttcgccagccagggagacccgccctggagc
cctctgatgcagggagacagccactgccgaaaagtaagacggtcgtctaattctcgagcc
actgacatgtttgagcagcacctcggggcgcacctcctgcagtctctggatggctttgtg
ttcgtggtcagtcaggagggacgtttcctctacatctcggagacagtttctatctacctg
ggactctcacaggtggagctgacgggcagcagcgtgttcgattacatccacccggcggac
cacgtggagatggccgagcggctgggaatcaggccgcacctgagggccgaggccggctgc
cacacgggccccgagagcgcctccagctccgcgtccgcctcgtccttagccgggacgccg
gaacccgctccgtctagtcctcactcgcccgccaacgagcctcacgaccgcggctacttc
atccgcatgaagtccacgctcaccaagagaggcctgcacgtcaagtcctctgggtacaag
gtgatccacgtgacgggacggatccgctgccgccccgccctggtgccgggctcggcgcgc
tcggtgcgtcggcccatcggtctggtgtcgctggcgcacacactcccgccctcctcgctc
aatgaagtccgcatggagagccagatgttcgtctgccgggtgaacatggacctgcaggtc
acgtattgtgagaacaggatctcagagtatatggatctgaccccggccgaggtggtggga
cacacgtgttaccacttcatccatgtagaagacctggaaaacctgcggcatagccacgag
gacctgctaaggaaaggccaggtggtgaccagttactaccgatggctccagaggagagga
ggctacctgtggatccagtccagcgccaccgtctccatcaaccacaaagcgccgcacgaa
cgcaacgtcatctgggtcaactacgtcctgagtcgaacagagttgcccgacactcctctg
gatattctgcagctaccagagaacgtgagagcagagcgacttcgagtcagctcgtccccc
accggcagttccccccaggcccgaggttcgcaaccggcgaagagctcgctggggaagagt
gaccccgacacgaagggcagagataaattcacccccgccgccatccaatcagaggacagg
aggaagcgcctgctgaggtccgaccccgagggcgctcctcccgaaacccgccgcagactg
gaggagctccgccccgccgaggagagcgtctccgcctcttccgacctggcgagcgaaagc
gagggggaggaagaagaggaggaggaggaggagaccgagtgggaccagggggggaacggg
gaccgactgaaagaggaagacggcggcggaggaggtaaactgagtcggggcggaggagga
ggaggaggaggaggaggaggagacacccccaccggcggggcgagggggagcaggctgcac
aacggccgggccgtgatccagcagctgaagagcgcggtggccccgcccccgctgcccggc
agccccggcgtcaagactgaacacgcagccctgacccccggcggggggggggggcgttgg
gagccgcggaccccggccccccgcgcgcacgccgctcagcctccgccctcgcacgcgcac
acgccctccagcagcctcaacggcgacagccccacgacgcccgcccccgactcctcctcc
tccggcggcgaggccccgccgaaaggcttgttcacgcccccgtccccggctctctctccc
gccgtgtccgtgtcctccccgctgccccgcgaggaccgggcggcggcggcgggctcggtc
actcggagcggcggcggcggcgcgtgcggcgttccggacttcgagctgctccagaggctg
gcggcggcgggcggcgcggcggggcgggtcctcttccaccccctcgccctcggcccccag
ggcccccagagcctctacgcgcccagcaccatccgctacgctccgcccgatctgccccac
caccacggcatcgagcacggcgacggcctgcagctacgctcggaccaccacaagggaccc
ccccccccgcccgccttcttcccccacctgcagcggttggccggcttgccgcccttcagc
ggtttctccccgtccgacggccctttcccctccggcctgcccttctgtatgaacggactg
aggggggccgcgggctccgaggaggactga
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