Pseudoliparis swirei (Mariana hadal snailfish): 130211207
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Entry
130211207 CDS
T09868
Name
(RefSeq) spectrin beta chain, non-erythrocytic 4-like isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04517
IgSF CAM signaling
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
130211207
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130211207
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pswi04812
]
130211207
Cytoskeleton proteins [BR:
pswi04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
130211207
Intermediate filaments
Intermediate filament-binding proteins
130211207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
SLATT_6
Motif
Other DBs
NCBI-GeneID:
130211207
NCBI-ProteinID:
XP_056297905
LinkDB
All DBs
Position
20:complement(11853891..11931449)
Genome browser
AA seq
2693 aa
AA seq
DB search
MANASPDLDNAEAQRQLNNNNRPSSSGFWETECSSSKLFERSRIRALADERDAVQKKTFT
KWVNSHLSRVSCRIADLYNDLRDGYMLTRLLEVLSGELLPRPTRGRMRIHCLENVDKALQ
FLKEQRVHLENVGSHDIVDGNHRLTLGLMWTIILRFQIQVIKIETEDNRETHSAKDALLL
WCQMKTAGYPEVNIQNFTNCWRDGLAFNALIHRHRSDLIEFQKLTRSNATHNLQQAFNIA
EQHLGLTKLLDPEDVNTENPDEKSIITYVVSYYHYFSKMKALIVEGKRVGKVLDNCIEAE
KIVNRYEALASDLLDWIEKTIAVISNQKFANSLTGVQQQLQAFTTYCTIEKPIKFQEKGN
LEVLLFTIQSKLRANNQKPYVPHDGKLISDINKAWERLEKAEHERGVALRKELIRQEKLE
LLAQCFDHKTTMRQAWLNENQRLVSQDNFGYDLPAVEAAMKKHEAIEADIASYEERIGVV
VELGAEMEVEGYYDIRRILARKENILGQWSLLKELVAGRRTRLEKNLALQKTFQDMVYMI
DWMEETQVQLLSKDFGKHLLEVDDLLQKHSLQEVDIAVQAERVESLNTAALKFTTVEGYQ
PCDPQVICNRVNHVSTCLQELKQLAAKRHDELEESRQLWAFFQDLEESEAWISEKSAILG
AQGNGKDLSSVLKLLQKHKTLAGELLAHRSLLQNTMKRGKQILSDKSFGTAGIQERIMEV
KGEWKRLEDQAAQRLGHLQEALNFFQFSTETDDLVAWLQDAYRLVSSEDFGHDEYSTQSL
LKKHRGVSEAVDKHRVHVVALRKHMVVLPLQYREQEEVQVRMGEVEQLYTEVAEVAVLRQ
QWLHDALAVYRMFSEVNACELWIDEKEQWLDKMEIPERLEDVEMVAHRFESLDQEMNSLM
GRILDVNQIVQQLLDGGHPSSTEVRGCQDHLNSRWNSIVELVEQKKDQLESMLRLQNYLL
QCAEIKSQIQDKRKAIDATQYVGSDLGGVLALQRRLSTMEGALSVLEPKLLHLQEEAEHM
ANAHPGRAMEVLVPFDGISLEWEELKRTLQGCEDSLMVASRLQSFIQDLDSFLTWLVQTQ
TAAASDLLPNDLEEAEKLINKHAALKEEIGRYEEDYERLQAMNDLLESEEAPLPQAALQQ
WLQKLDVGWNKLLEMWESRREVLVQAHIFHLFLRDVKQAESFLNNQESALAHVELPATVE
TVEAAIKKHKDFTTTMELNLHRIKAVIEAGESLISQSNIYSDRIKERIDTLANRGNQNRE
LAQQWLNRLNDQWELQRFLQDCHELGDWVCEKMLMAKDGSRDETQKLHKKWLKHQAFMAE
LAQNKEWLDKIEKEGQHLIQEKPELSAVVRRKLEEIRECWQDLESTTQAKARQLFEANKA
DLLVQSYESLDQRLGQLEGQLAYVDQGQDLTTVNKQLKKLHTMENQMEVWYKEVGQLQVQ
VASIPQQTQIKETVAGRQAVVEARMVRLIEPLKERRRILLASKEVHQVGRDLEDEILWIQ
ERLPMAMSQEHGSSLQAVQQLMKKNQSLQRELQGHRSRIDDVLERAGIIGSIRSPEANCV
RAGYDQLAQLWALLWAETERRQLILDAMYQAQQYYFDTAEVEAWLSEQELHMMNEEKGKD
EPSTLQLLKKHLVLEQTIEDYAETVGLLSQQCRQLLEMGHPDSEQISKRQTQMDRLYASL
KDLVEERKSRLEQQYWLYQLNREVDELEQWIAQREVVASSPELGQDYEHVTVLQENFTEF
ATETDSVGQERVTAVNQMVDELIDYGHLEAATIAEWKDGVNDSWADLLELMETRAQMLAA
SHQLHKFFSDCREVLAQIEDKHRRLPEVRARQGSTTNTSTLQRVLQSFEQDIQLLVSQVR
QLQESAAQLRTVYAGEKAEAIACREHEVMQLWKELLMSCEECRVQITTETDKLRFFSMVR
DQIMWMESIICQIGTGEKPRDVSSVEVLMNYHQSLQSEVEARTRSTMECIEMGKTLLAAR
NPAAEEIKERLDKVVAKQYELSEKWEKHWDFLQQLLEVHQFAQEAVVAEAWLTAQEPLIS
SNELGASVDEVEQLIRRHEAFRKAAATWEERFSSLRRLTTVEKLKAEQSKLPPTPLLGRK
VFLEPQDALPSASTLPRLPISPVMRQTIYEQNEANSPPSPSPATPTPSPSSVARRLGSTV
ANYTPVMNGSSYRHALEARHNLGLGAGLGQPAPSSIASVATAAMLVSANQAREIACTTGD
QATKVMSHLHPAQAARTLEAKSSPYLRQARLKHMDDAVTPLIVASRLEKAREKERELMMG
EFGMERAEVSVTAEVVLQEPSRERLHSEPTRGPRGSRSDPLGQAEPQVQTHHRIERQLSS
EQLIQARRDELPQELWREHAERREKRTLERQTSSEHEGHGGHEGRRRERDRHRLERQESS
EHDTGKEHSDRRSGGGEKRSTMAEIVEQLQEREAAQARGEVPKLPNGVPEKPSRLERPRA
RDRPKPRRRPRPKEAGETTTRRSRSAPTQSSPAVPQPPAHTAHHEGFLFRKLDIETLKKS
TNSRSWVNLYCVLNKGEMGFYKDAKSTATTYNGEPLLNLSDCHCDVTNGYKKKKNVFTLK
TKDGSEFLFHAKDEEDLKVWVTNITGSITEHEEILKWGQPQPTTSSTEEVTRLDGSKGDN
RSERGGERSDCGERIEPADLEMEKEKERGERSERSDRGGKSESKRSEKSGKRK
NT seq
8082 nt
NT seq
+upstream
nt +downstream
nt
atggctaatgcctccccagacctggacaacgcggaagcccagcgccagctcaacaacaac
aaccgaccaagcagctcaggattctgggagacggagtgcagcagctccaagctgtttgag
cgctcccgcatcagggccctggcagatgaacgagatgcagtgcagaagaagacttttacc
aagtgggtcaactcccatctgtccagagtgtcctgtcgcatagcggacctctacaacgac
ctgagggatggatacatgctcaccagactgctggaggtcctcagtggagagctgctgccg
aggcctactcggggtcgaatgcggatccactgcctggagaacgtggacaaagccctgcag
ttcctaaaagaacagagagttcacctggaaaatgtgggttcccacgacattgtggatggc
aatcaccgtctcaccctgggcctcatgtggaccatcatcctgcgtttccagatccaggtg
atcaaaatagagacggaggacaacagagaaactcactccgccaaagacgctctgctgctc
tggtgccagatgaagaccgcaggataccctgaggtcaacatccagaacttcaccaactgc
tggagagacggcctcgccttcaacgccctcatacacagacacagatccgacctgatagag
ttccaaaagctgacgcggtccaatgcaacccacaacctccagcaagcctttaacatcgct
gagcagcacctgggcctcaccaaactcctggaccccgaggatgtgaacacagagaaccca
gacgagaagtccatcatcacgtatgtggtctcctactaccactacttctccaagatgaag
gctcttattgtggagggcaagagggttggcaaggtcctagacaactgcattgaggcggag
aagatcgtcaaccgctacgaggctctggcatcggacttactcgactggatagaaaagacc
atcgcggtcatcagcaaccagaagtttgccaactcgctgaccggagtccagcagcagctg
caggccttcacaacctactgcaccatcgagaagcccatcaagttccaggagaaggggaat
ctcgaggtccttctgttcaccatccaaagcaagctcagagccaacaaccagaaaccctac
gtgcctcatgatgggaagctcatctcagacatcaacaaggcctgggagaggcttgagaag
gcggagcatgagcggggcgtggctctgcgcaaggagctgattcgtcaggagaagctggag
ctgttggctcagtgctttgaccacaagaccaccatgagacaagcctggctcaatgagaac
cagagactcgtatcgcaggacaattttggctacgacctgccagcagtcgaggcggcaatg
aagaagcacgaggccatcgaggcggacatcgcctcgtacgaagagcgaatcggagtggtg
gtggaactcggggcggagatggaggtcgaaggatactacgacatccggcgtatcctggca
cggaaggagaacatcctgggccagtggagtctgctgaaggagctggtggctgggaggagg
acccggctggagaagaacctggccctgcagaagactttccaggacatggtctacatgatt
gactggatggaggaaacacaggtccagcttctgtccaaggactttgggaagcatctcctg
gaggtggacgacctgctgcagaaacacagcctgcaggaagtcgacatcgcggtgcaggcc
gagagggtcgagagcctcaacaccgccgcgctcaaattcaccactgtagagggttaccaa
ccctgcgacccgcaggtgatctgtaaccgtgtcaaccacgtctccacctgcctgcaggag
ctgaaacaactggcagcgaaacggcatgatgagcttgaggagtcaagacaactgtgggcc
ttctttcaggatctggaggagtcggaggcctggatcagcgagaagagcgccatcctggga
gctcagggtaacgggaaggacctgagcagtgtgctgaagttactacagaaacacaaaacc
ctggctggagagctgctggctcaccggtcgctgctgcagaacaccatgaagcgaggaaag
cagatcctgagtgacaagagctttggcacggcgggcatccaggagcgcatcatggaggtg
aagggcgagtggaagaggctggaggaccaggccgcgcagcgtctcggccacctgcaggag
gcgctcaactttttccagttctccacggagacggacgacctggtggcgtggctgcaggat
gcctaccgcctggtctccagcgaggactttggacacgacgagtactccacccagtccctt
ctgaagaagcacaggggggtcagcgaggccgttgacaaacatcgtgtgcatgtcgtggct
ctccgcaaacacatggtggtgctgcctctgcagtaccgtgaacaggaggaggtgcaggtg
cgcatgggagaggtggagcagctttacaccgaggtggccgaggtggcggtgctcagacag
cagtggctccacgatgccctcgccgtctaccgcatgttcagcgaggtcaacgcctgcgag
ctgtggattgacgagaaggagcagtggctggacaagatggagatcccagagagactggag
gatgtggagatggtggcacaccggtttgagagcctggaccaagagatgaacagcctgatg
gggaggatcctagacgttaaccagatagttcagcagctcctggatggaggtcatccgtcc
tcgacagaggtcagaggttgtcaggatcacctcaactccaggtggaacagcattgtggag
ctggtggagcagaagaaagaccagctggagtccatgctacgcctgcagaactacctgctg
cagtgtgccgagatcaagtcccagatccaggacaagaggaaagccatcgacgccactcag
tacgtgggcagcgacctgggaggagtccttgctctgcagagacgcctctccaccatggaa
ggagccctgtcggtcctggagcccaaactgctgcatctacaggaggaggcggagcacatg
gccaacgcccatccgggtcgggccatggaggttctcgtgccgttcgacggcatcagcttg
gagtgggaggagctaaaacgcactctgcaaggctgcgaggactcgctgatggtagcaagc
aggctgcagagcttcatacaggacctggactctttcctcacctggttggtccagacgcag
acggccgccgcctcagacctgcttcctaacgacctggaagaggcggagaaactcatcaac
aaacacgcggccctgaaggaggaaatcggacggtacgaggaggattacgagcgcctgcag
gccatgaacgatctgctggagtccgaggaggctcccctccctcaggccgccctgcagcag
tggctccagaagctcgatgtcggctggaacaaactcctggagatgtgggagagccggagg
gaggttctagtccaggctcacatcttccaccttttcctgcgagatgtcaaacaggccgaa
tccttcctcaacaaccaggagtcggccctcgctcacgtggagctgcctgccacggtggaa
acggtggaggccgccataaagaaacacaaggacttcaccaccaccatggagctgaacctg
caccggatcaaagctgtgatcgaggctggagagagtctgatcagccaaagcaacatctac
tccgaccgcatcaaggaacgcatcgacaccctcgccaacaggggaaaccagaaccgagag
ctggcccagcagtggctgaacagactgaacgaccagtgggaacttcagaggtttcttcag
gactgtcacgagctgggggactgggtgtgtgagaagatgctgatggcgaaggacggcagc
cgagacgagacccagaagctccataaaaaatggctgaagcaccaggccttcatggccgag
ttggcccagaacaaggagtggctggacaaaatagaaaaggagggccagcatctgatccag
gagaagccggagctcagcgcggtggtccggaggaagctggaggagatcagggaatgctgg
caggacctggagagcaccacccaggccaaagcccgccagctctttgaggccaacaaggcc
gacctgctggtgcagagctacgaaagcctggaccagaggctgggccagctggagggtcag
ctagcctatgtggaccagggacaggacctcaccactgtcaacaagcagctgaaaaagcta
cataccatggagaatcagatggaggtgtggtataaggaggtggggcagctccaggtgcag
gtggcctctatcccgcaacagacgcagatcaaggagacggttgcaggccgccaagccgtt
gtagaggccaggatggtgcgtctgatcgagccactgaaggagaggcggcgcatcctgctg
gcatcgaaggaagttcaccaagtcggacgagacctggaggacgagattttgtggatccag
gagcgcctcccaatggcgatgtctcaagagcacggctcctctctgcaggcagtccagcag
ctcatgaagaagaaccagagccttcagagggagctgcagggccacaggagccggatcgac
gatgtcctggagagggcggggatcatcggctccatacgcagcccggaggccaactgcgtc
agggcgggctacgaccagctggcccagctgtgggctctgctctgggccgagaccgagcga
aggcagctgatcctggacgccatgtaccaggcccagcagtactacttcgacacggctgag
gtggaggcctggctgagcgagcaggagctgcacatgatgaacgaggagaaggggaaggac
gagccgagcacactgcagctgctgaagaaacacctggtcctggaacagaccatcgaggac
tacgccgagaccgtcgggctgctgtcacagcaatgtcgacagctactggagatgggccat
ccagacagcgagcagatcagcaagcgtcagacgcagatggaccgtctgtacgcgtctctg
aaggacctggtggaggagaggaagagccgcctggagcagcaatactggctctaccagctc
aaccgggaggtggacgagctggagcagtggatcgctcagagggaggtggtcgccagctcg
ccggaactgggtcaagactacgagcatgtcaccgtcctgcaggagaatttcacggagttt
gcaacagagacggacagcgtggggcaggagcgggtgacggccgtcaatcagatggtggac
gagctcatcgactacggccacttggaggccgccaccatcgccgagtggaaggacggggtg
aacgattcgtgggccgacctgctggagctcatggagacccgggcgcagatgctcgccgcc
tcccaccagctgcacaagttcttctccgactgcagagaggtgttggcccagattgaggac
aagcaccgacggctgccagaggttcgggctcggcagggcagcaccaccaacaccagcacc
ctacagagagtcctgcagagcttcgagcaggacatccagctgctggtctcgcaggtgcgt
cagctgcaggagagcgcggcccagctcaggacggtctatgccggcgagaaggctgaagcc
atcgcgtgccgcgagcacgaagtcatgcagttgtggaaagagctgctgatgtcctgcgag
gagtgtcgagtgcagatcaccaccgagacggacaagctgaggttcttcagcatggtccga
gatcagatcatgtggatggaatcgatcatctgtcagatagggacaggagagaagcccagg
gacgtgtcctcagtggaggtgctgatgaattaccaccagagtctgcagagcgaagtggag
gctcgcacccggagcaccatggagtgtatcgagatgggcaaaactctgctggctgctcga
aacccagcagctgaagagatcaaggagaggctggacaaggtggttgctaagcaatatgag
ctgtccgagaagtgggaaaagcattgggacttcctgcagcaattgctggaggttcaccag
tttgcccaggaggcagtggtggcggaggcgtggctgaccgctcaggagccgctaatcagc
agcaacgagctcggcgcgagtgtagacgaggtggagcagctgattcgtcgacatgaagcc
ttccgcaaagccgccgccacctgggaggagcgattcagctcactgcggcgactcaccacg
gtagaaaagttgaaagctgagcaaagcaaactaccaccgacccctctgctgggtcgtaaa
gtcttcctcgagccccaagatgccttacccagtgcgtccaccctcccccgtctcccgatc
tcccccgtcatgagacagaccatctatgagcagaacgaagccaactctcctccctcgccc
tcgcccgccacgcctacgccctctccctcgtccgtggctcgtcgcctggggtcgacggtc
gccaactacacccctgtgatgaacggctccagctaccgccacgcgctggaggcgcggcac
aacctcggcctgggcgctgggctgggccagcccgctccctcctcgatcgcctcggttgcc
acagcggccatgctggtttcggctaaccaggcgcgagaaatcgcttgcacgacaggagac
caagcgaccaaggtgatgagtcacctccatccagcacaggcggcgaggacgctggaggcc
aaatcatccccgtatctgcggcaagccagactcaaacacatggacgatgcggtgacgccg
ctgatcgtggccagccggctggagaaagcgagggagaaagagagagaattgatgatggga
gaatttgggatggagagagcggaggtgtctgtgacggccgaggtcgtgctccaggagccg
agcagggaacgcctgcacagcgagcccaccagggggccgcgggggtccaggagcgacccg
ctgggccaggccgagccccaggtccagacccaccacaggatagagcggcagctttccagc
gagcagctgatccaggcacgcagggacgagctgccccaggagctgtggagggaacacgcc
gagaggcgggagaagcggacgctggagaggcaaacctccagcgagcacgaaggccacgga
ggccatgagggccggcggagggagagggaccgacaccggctggagagacaggaatccagt
gagcatgacaccgggaaagagcactcagacagacgctcaggaggaggagaaaaaagatcc
accatggcagaaattgtagagcagctgcaagaaagggaagcagcacaggcccgtggcgag
gtgcccaagctgcccaacggggtaccggagaaaccttcccgtctcgagcgaccccgagca
cgggacaggcccaaaccgcggcgccggccacgacccaaagaggcgggagagacgactacg
cggcggtccaggtccgcgccgacccagagcagcccggcggtgcctcagcctccagcacac
accgcacaccacgagggcttccttttccgcaagctggacatcgagaccctgaagaagagc
accaatagcaggtcatgggtcaacctgtactgcgtgctcaacaaaggggagatgggcttc
tacaaggacgccaagagcaccgccacgacctacaacggcgagccgctgctcaacctctcc
gactgccactgcgacgtcaccaacggctacaagaagaagaagaacgtcttcacgctcaaa
acaaaggatggcagtgagttcttgtttcacgcgaaagatgaggaagacctgaaggtgtgg
gtgaccaacatcacgggcagcatcacggagcacgaggagatcctaaagtggggtcagccc
caaccaactacctcatccaccgaggaggtcacgcggctcgacggcagcaagggagacaac
cggtcagagcggggcggcgagcgctcggactgcggcgagcggatcgagccggcggacttg
gagatggagaaagagaaggagaggggcgagcgttctgagaggtcggaccgaggagggaag
tcggagtcgaagcgctctgagaagtccggtaagagaaagtga
DBGET
integrated database retrieval system
