Pseudoliparis swirei (Mariana hadal snailfish): 130211319
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Entry
130211319 CDS
T09868
Name
(RefSeq) cell adhesion molecule DSCAML1
KO
K06768
Down syndrome cell adhesion molecule-like protein 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130211319
Cell adhesion molecules [BR:
pswi04515
]
Immunoglobulin superfamily
DSCAM family
130211319
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
ig
fn3
V-set
C2-set_2
Ig_DSCAM-DSCAML_C
C1-set
Pur_ac_phosph_N
V-set_CD47
Motif
Other DBs
NCBI-GeneID:
130211319
NCBI-ProteinID:
XP_056298034
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Position
20:complement(23733912..23838514)
Genome browser
AA seq
1362 aa
AA seq
DB search
MWLVTLLLLYSLQEVNGEDVASTRLYFVNASLQRVTFSSSVGVFLPCPAGGAPHAVLRWY
LAAGDDIYDVPHIRHVHANGTLQLYPFSPSAYNSIIHDNEYFCTAENQAGKIRSPSIHIK
AVFREPYTVRVADQRSMRGNVAVFKCLIHSAVQEYVSVVSWEKDTVSIVTGNRFFLTTFG
TLYISEVQKEDALSTYRCITKHKYSGETRQSNGARLSVMDPMESTPSMLDSFQSGEVQVG
LVVEFPCIASGYPNPTIRWLKDGRPLPADSRWTRRTSGLTISDLRLEDSGNYICEVTNSF
GSKEVTGHLNVIEPLRVTLSPKNLKTGISSTVILSCAVQGSPHFIVSWYRNTVSVIPDQH
FSIQGAHNETLFISAAQKRHSGAYQCFAMRKDQTAQDFSIILLEDGTPRIVASFSEKVVL
PGEPFSLMCAAKGAPPPTLTWTLDDEPVARDLSRVRTSQYTLSDGSAMSHVNISSPQIRD
GGVYRCAARNSAGSAEYQARINVRGPPRIRPMKNITAVAGRNSFISCRVIGYPYYSINWY
KEGLLLPDNHRQVVYENGTLKLSDVQKVLDEGAYVCSVLIQPQLFITQTVYISVKVPPLI
QPFDFPPTSIGKLMYIACVVSSGDMPIHITWRKDGQEIVASSGITIDTKEFMCSLQISKV
SLKHNGNYTCIASNDAATVSTERQLTVTVPPRFMVQPNNQDGIYGKAGILNCSVDGYPPP
KVLWKHARTGIGSPQQYHPVPLTGRIQIMNNGSLLIRHVLEEDRGFYLCQASNGVGSDIS
KSMVLTVKIPAMITSHPNTTMAKKGHLKELNCTARGEWPIIIRWEKGDTVIDPDRNPRYS
ILTSPNEKTDEVLSTLKLKPAEREDSVFFSCHAINSYGEGRGLIQLTVQEPPDPPELEVR
EVKDRSMNLRWTQRFDGNSVITCYDIEYKNKTDTWELKHATRNISPSNNQANIVDLHPAS
VYSIRMFSYNVIGKSEASKELTISTEEAQPDGPPMEVILQPVTSQSIRVTWKAPRRELQN
GVIRGYQIGYRETGPASNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGP
SSSEINATTLEDVPSQPPQNIRAISVTSDEAVITWAEPPRMTLHGVLKGYRVVFWTVFPD
EGVCCTLSCPFFSEWGEMQNITTTKEQVELRGLEKFTNYSIQILAYTQAGDGVRSKVLYI
QTREDYPGPPAAIKTMPSSASSVVVSWLPPHKPNGIIRKYTIYCSSPGSGQPLPSEYEAN
PELLFYRITHLNHRQQYLIWAAAVTTAGRGNFSDKVTVAPAAKGGSLNTPIHRERLTLER
SGAESTAFRESSAKSDRCYEESASVGSEDYERKYNLGVWRRK
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgtggcttgtaactttacttctgctgtattctttgcaagaagtcaacggtgaggatgtt
gcctctacgcggctgtactttgtgaacgcctccctgcagcgggtgaccttctccagctcg
gtgggggtgttcctgccctgccccgcgggcggcgccccccacgccgtcctgcgctggtac
ctggccgccggagacgacatttacgacgtgccccacatccgccacgtgcacgccaacgga
accctgcagctctacccgttctcgccctccgcctacaacagcatcatccacgacaacgag
tacttctgcaccgccgagaaccaggcgggcaagatccggagccccagcatccacatcaaa
gcagtgttcagggagccctacaccgtccgcgtggccgaccagcgctccatgcggggtaat
gttgccgtgttcaagtgcctcatccactccgccgtccaggagtacgtcagcgtggtctct
tgggagaaagacacagtctccatcgtcacaggtaaccgctttttcctgaccacatttggc
actctgtacatctcagaagtgcagaaggaagacgctctgtccacctaccgctgcatcacg
aagcacaagtacagcggagagactcgccagagcaatggagcccggctctctgttatggac
cctatggagtccaccccgtcaatgctggacagtttccaatccggtgaggtacaggtgggg
ctcgtcgtggagtttccctgcatcgcttccggatacccaaaccccaccatccgatggctg
aaggatggtcggccattacctgcagactcccgctggacgcggcgcacctccggcctcacc
atttcagatttgaggctcgaggacagcggcaactacatctgtgaggtcaccaacagtttt
ggctccaaagaggtgacgggtcacctcaacgtcatagagccactacgggtcacgttgtcc
cccaagaacctgaagacggggatcagcagcacagtcatcctatcctgcgccgtccaaggt
tccccgcattttatcgtgtcctggtaccgtaacacggtatccgtgatacccgatcagcat
ttttccatccagggggctcacaatgagacattgttcatttccgccgcacaaaagagacac
tcgggagcttaccagtgcttcgccatgcgcaaagaccagacggcccaggacttctccatc
atcctgctggaagacggtaccccccgcatcgtcgcctccttcagcgagaaggtggtgctg
ccgggcgaacccttttccctgatgtgcgccgccaaaggagcgcctccccccaccctcacc
tggaccctggacgacgagcccgtcgcccgggacctgtcgcgcgtccggaccagccagtac
acgctgtcggacggcagcgccatgagccacgtcaacatcagcagcccgcagatccgcgac
ggaggcgtgtatcggtgcgccgcacgaaactcggccggtagtgccgagtaccaagcgcgc
ataaacgtaagaggtcctccgaggattcgacccatgaagaacatcactgcggtggcgggg
aggaactcgttcataagctgccgtgtgattggctacccttattactcaatcaactggtac
aaggagggtctcctgctgcctgacaaccatcgccaggtggtgtatgaaaatgggactctg
aagctcagcgacgtccagaaggttctggacgagggcgcctacgtctgcagcgtgctcatc
cagccacagctgttcatcactcagaccgtctatatttctgtcaaagtccctccactgatc
cagccgtttgacttcccgccgacgtccatcggcaagttgatgtacatcgcctgcgtggtg
tcgtccggcgacatgcccatacacatcacgtggcgcaaggacggccaggagatcgtcgcc
tcgtccggcatcaccatcgacaccaaggagttcatgtgctccctccagatctccaaggtg
tcgctcaaacacaacggcaactacacgtgcatcgccagcaacgacgccgccacggtcagc
acggagcggcagctcactgtcacggtgcctcctcggttcatggttcagcccaataatcag
gatgggatctacgggaaggccgggatcctaaactgttcagtcgacggataccctcctcca
aaagtcctgtggaagcatgccagaacgggcatcgggagcccacagcagtaccaccctgtg
cctttgacgggccggatccagatcatgaacaacggctctctgctcatcagacacgtgctg
gaggaagatcgcggcttctacctctgtcaggcctccaatggcgtcggctcggacatcagc
aagagcatggtgctcaccgttaagatcccggctatgatcaccagtcaccccaacaccacc
atggcgaagaagggtcacttgaaggagctgaactgcacggccaggggagagtggcccatc
atcatccgctgggagaaaggagacacagtaattgaccccgaccgcaacccccggtactcc
attctcaccagtcccaatgagaagaccgacgaggtgttgtctactctcaagctgaagcca
gcagagcgtgaggattcggtcttcttctcctgccacgccattaactcttatggagagggg
cgtggcctcatccagctcactgtgcaagagcccccggaccctccggagttggaggtgcgt
gaggtcaaagatcgcagcatgaatctcaggtggacgcagagatttgatggaaacagcgtc
atcacctgctatgatatcgagtataagaacaagacggatacctgggagctgaagcacgcc
actcgaaacatctcccccagcaacaaccaggcgaacatcgtggacctccacccggcctcc
gtctacagcatccgcatgttctcctacaatgtgatcggcaagagcgaggccagtaaggag
ctcaccatcagcacggaggaagcacagccggacggtcctcccatggaggtgatcctacag
ccggtcacctctcaaagtatcagggtcacctggaaggctcccaggagagagctgcagaac
ggggtcatccggggttaccagatcggttaccgagagaccggcccggccagcaacggccag
tacagcatcgtggagatgaaggccaccggagacagcgaggtctacaccctggacaacctg
aagaagtttgcccagtacggcgtggtggtccaggccttcaacagagccggcaccgggccc
tcgagctcggagatcaatgcgaccacgctggaagatgtgcccagccagcctcctcagaac
attcgagccatttccgtaacatcggacgaggcggtgatcacgtgggcggagcctccccgg
atgacgctgcacggcgtcctgaagggctatcgcgtcgtcttctggactgtgtttccggac
gaaggtgtgtgttgcacactttcgtgtccctttttttcagaatggggggaaatgcaaaac
atcaccaccaccaaggagcaggtggagctccgaggcctggagaagttcaccaactacagc
atccagatcctggcctacacccaggccggagacggcgtccggagcaaagtcctgtacatc
caaacccgcgaagactatcccggacccccagctgccatcaaaactatgccctcctctgcc
agcagtgtggtggtgtcctggttacctcctcacaagccaaatggaatcatccgcaaatac
accatctactgctccagccccggctccggccaaccgctgcccagtgagtacgaagccaac
ccggagctgcttttctacagaatcactcacctcaaccaccggcagcagtacctgatctgg
gccgcggccgtcaccacggcgggccgcgggaacttcagcgacaaggtcacggtggcgccc
gcagccaagggtgggtccctcaacacgccgattcatcgcgagaggctcacgctagagcgc
tcgggtgccgagtcgacggcgttccgagagagctcggcgaaatctgatcgatgttacgaa
gagtcggcatcagttgggtctgaagactacgagcgcaaatacaatctgggtgtgtggaga
aggaagtga
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