Pseudoliparis swirei (Mariana hadal snailfish): 130211459
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Entry
130211459 CDS
T09868
Symbol
focad
Name
(RefSeq) focadhesin isoform X1
KO
K27498
focadhesin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130211459 (focad)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130211459 (focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
Motif
Other DBs
NCBI-GeneID:
130211459
NCBI-ProteinID:
XP_056298139
LinkDB
All DBs
Position
21:complement(17252029..17299863)
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AA seq
1805 aa
AA seq
DB search
MTESLKLRFDFPSPIIQAQAVRHLVAAVLKEIAVNGQITQSSTQGPALEALWQQCCIDGA
LVRSACCDALVLLVDQGHADLHHVLNSVLNLLPSARNVQGLMKVIGRLLQMQADRRDGDA
PFTCPYSIRSSPHPFITALENRADCWAALLLEIDDFIGQAADRSGPAYVAMLAPFLRYLY
CEPHRQPQHALLRLRLLRVLVPVRPGEAGSALQDQEHTCCPVSDGLLRCLCELVPHMQVD
SVEAVMELCGFADALLPGLVPPPERRWRAESGVLLLQLLVACQRCLQLDGDCRPLLGVLR
RLLPAGRQALPLDELLMGVAMLMLEGPAAQQSSLLSLALSLIPEGAEPAPWLSPVLVLPV
LQLLSCSELTEPLADRRTHRLNQDLARRLLLRVSREAEQPTQAGPSLALPLSSWYSELSV
ALSTLRKAASDPAAAADWLLSVSAALSSSHSRLGPLALVVAHLVITGREDVCQLALKAGQ
ALAAADPGQVPSLIPVLLFKLGKEKNPVLAHAVLNCLPNLGTHKLCVPMVLQTLHMLASD
PKLRAVAMRLMTDLWRKQDRIYPELQRLLGQQDSRVVVGRDAQWEHILARAACLRDICRE
RPYQHGSDMLALITLTLNQCTKPDMATPAALALQGLRELCQAEVVDIVSTWRSLGPELSC
DSRPLVVKVIAELLALVPQLTVKSDEYEKLKEEVVSLLWNYAVSKDPEVASCGYRALANF
PEAVHTINLLPEAARPAPKTPDHEEDEPLEEEEEKDLSIPGPSYVKLMALTPVSALPAFE
LFLTSLVKQEMSQMPRGVYFSALRAGNLRTDQGKTMAGIPSFMLKTYEKNKQPGLKPGLA
AGLLLCYELPMQTDREGRRIERFLVSRSRSFQQTLVALVHEVNIQPSEWHRALLLPQAWR
GFMSRAFHAVLQGRRADLEMQQKQGKEEPQELQYKQHCAWLWARDQLADVIKTATKDSPV
VQGNSILALSGLAAALAKYESNLPADADGGLGAGPEFVPTASWLAMVVNTLLSISSSSYK
PRGQVFPWFLHRSYSGENTASAIARSCASLALSLLVPVLVVWQRDGLGQVLAALQAGLPG
FPTADDSQAVQFHSGLALGMVLSSLHHQRLGEASGQKEDLLRSSLEALESCSFNPNLEYN
TGCVLGLGLVLAALCSSGMTDQHVHVTLTLDRLLSNLQDSGGQGRMLQEVLAYSVACVAV
SAFNGGLIDADKAEEVMTTLRTLTEESQQTPGFSLALGLVIHGLSMSGHGKAEDIHPRLL
AAWVKILLAEGCPTMQRLAAVNGLVALVGSETSLVQQTSESELSAQQQSRLNEVIRAITQ
IVTFSAAIGLQSNSACLVGHLHLAHMSTSHSHTAVPQDFSYLSEKSLIRSIVDVLSEAGK
KGPEFAHPALVKSALTPLASVGASFQYPPVNWSAILSPLMRLSFGEDVQHQCVLLAVSQA
QSSQSSSLFLGSWLSPPLVHSLSYQTRAHLLDSLGSWMKHVAEDKLQVHMETLGLQQFQE
DLRPQRLALCRSLLQGLARAMGLPNPPNSCWTILSSTTEKIFSLLPNQIQDDEVDLYVGI
SKCLSEMSDAEIERITRVTEAQMEKTCFVLAHLTSQGRVPLLGLNDVIAGVLRGWPSRRV
GWLLLQTFYQCRLAASPSTGVSKRMEWLLELMGHIRNVAYGATAVTCGDTKLATDFLFQV
FAAAVVSWGDHAMPLLLGIRATWFPWQPASKPHALQHALYGEESLADLALPQCLLGMPRS
LALLLDKEPWSSQTTKFIDWLFSITEAPEQSLSATTVGTAKAGLLALKSSAEFKKKAVWT
RAYGW
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atgacggagagtttgaagctccgctttgacttccccagccccatcatacaagcccaggcg
gtgagacatcttgtagccgcggtgctcaaagagatcgcagtcaatgggcaaatcacacag
tcctccacccagggcccggcgctggaggccctgtggcagcagtgctgcatcgacggagct
ctggtgcgctcggcctgctgcgacgccctcgtgctgctggtggaccagggccacgctgac
ctgcaccacgtgctcaacagcgtcctcaacctcctgccctcggccagaaatgtccagggg
ttgatgaaggtcatcgggcggctgctccagatgcaggccgaccgcagagacggagacgcg
cccttcacctgcccttactccatcaggagcagccctcacccattcatcaccgcgctggag
aaccgcgcggactgctgggccgcgctgctgctggagattgatgacttcatcggccaggcg
gctgacaggagtggaccggcctatgtcgccatgctggcccccttcctgcggtacctgtac
tgtgagcctcacagacagccgcagcacgccctgctccgcctccgcctcctcagggtgctg
gtgcccgtacgcccgggggaagctgggtccgccctccaggaccaggaacacacctgctgc
ccggtctctgacggcctgctgcgctgcctctgtgagctggtgccacacatgcaggtggac
agcgtggaggccgtgatggagctgtgtggcttcgccgacgctctgctcccgggtctcgtc
ccgcccccggagcggcgctggcgggccgagagcggcgtgctgctgctgcagctgctggtc
gcctgccagcgctgcctgcagctggacggagactgccgccctcttctcggcgtgctgcgc
cggctgctgcccgccggccgacaggccctgccattggacgagctgctgatgggcgtggcc
atgctcatgctagaggggcctgcagctcagcagagcagcctgctcagtctggccctgagt
ctgatccctgagggggcggagccagcgccgtggctgagtccagtcctggttcttccggtg
ctgcagctgctgtcctgctccgagctgacggagccgctggccgaccggcggacgcaccgc
ctcaaccaggacctggcccgccggctgctgctgcgcgtcagcagggaggcggagcaaccc
acacaggccggtccctcgttggctctccctctcagctcctggtacagcgagctcagcgtg
gctctgtccacgctgcgtaaggcggcgagcgacccggcggccgcggccgactggctgctg
tcggtcagcgcggcgctgtcgtccagccacagccggctcggccccctggccctggtcgtg
gcccacctcgtcatcacggggcgggaggacgtctgccagctggccctgaaggccggccag
gccctggccgccgccgaccccggccaggtgccctccctcatccctgttctgttgttcaaa
ctggggaaggagaagaatccggtcctggctcacgcggtgctgaactgcctgcccaacctc
gggactcacaagctctgtgtccccatggtgctgcagaccctccacatgctcgccagcgac
cccaagctgcgagcggtggcaatgcgcctcatgacagatctttggaggaaacaggatcgg
atctacccggagctgcagcgcctgctgggccagcaggacagcagggtggtggtggggagg
gacgcccagtgggagcacatcctggccagagccgcctgcctcagggacatctgcagagag
aggccctaccagcatggcagtgacatgttggccctcatcacactcactctgaaccagtgc
accaaaccagacatggcaacccctgctgctcttgccctgcaaggactacgggagctgtgc
caggcagaggtagtggacatcgtctcaacatggaggagtctgggacccgagctgagctgt
gactcgcgccccctagtggtcaaagtcatagcggagcttctggcgctggttccccagctc
acggtcaagtcagatgaatacgagaaactgaaggaggaggtggtcagcctcctctggaat
tatgctgtcagcaaggatccagaggtggccagctgtggctacagggctttagcaaatttc
cctgaagccgtccacaccataaatcttctcccggaggcggccagaccagctccaaagacc
cctgaccacgaggaggatgaaccattggaggaggaggaagagaaggacctctccatccca
ggtccatcttatgtgaagctgatggcgctcacccccgtgtctgctctcccagccttcgag
ctcttcctcacctctctggtgaagcaggagatgagccagatgccccggggggtgtacttc
tctgccctgagggcgggcaacctgcgtaccgaccagggcaagaccatggccgggatccct
tccttcatgctgaagacctacgagaagaacaagcagcccgggctgaagcctggactcgct
gctggactgctgctctgctacgagctgcccatgcagacggaccgtgagggcagacgcatc
gagcgcttcctggtcagccgcagccgcagcttccagcagacgttggtcgccctcgtccac
gaagtgaacattcagccgtccgagtggcaccgcgccctcctgctgcctcaggcctggagg
ggcttcatgagccgagctttccacgccgtcctacagggtcgccgggcggatctggagatg
cagcagaaacaaggcaaagaggagccacaggagctgcagtacaagcagcactgtgcctgg
ctgtgggccagagatcagctggcagacgtcatcaaaactgctaccaaggacagtccggtc
gtccaggggaactccatcctggccctcagtggcctggcggcggccctggctaagtatgag
agcaacctgccagctgatgcagacggcggcctcggggctggaccagagtttgtgcccaca
gccagctggttggccatggtggtgaacaccctgctcagcatcagcagcagcagctacaaa
cccagaggacaagtcttcccctggttccttcaccggtcctactccggggagaacacagcc
agtgccatcgctcgctcctgtgcaagcctggcgctgtcgctgctggtcccggtgctggtg
gtgtggcagagggacggtctgggccaggtcctggcggcgctgcaggccggcctgccgggc
ttccccaccgccgacgactcccaggcggtccagttccactcgggcctggcactgggcatg
gtgctgtccagtctgcaccaccaacgcctgggggaggcctcgggtcagaaggaggatctc
ctccgcagctctctggaggctctggagagctgctccttcaacccaaacctggagtacaat
accggctgtgtgttgggtctgggtctggtgctggcggcgctctgcagcagtgggatgacg
gaccaacacgtccacgtcaccctgactctggaccggctgctgtccaacctgcaggacagc
ggtgggcagggccgcatgctgcaggaggtcttggcgtactccgtggcgtgtgtggccgtc
tcggccttcaacggaggactcatagacgctgacaaggcggaggaggtcatgaccactctg
cgcaccctgacggaggagagccagcagacgccaggcttctccctggctctcgggttggtg
atccacggcctgtcgatgtccggccacggcaaagcagaggacatccaccctcgtctgctg
gctgcttgggtcaagatcttactggccgagggttgtcccacgatgcagcgactggctgcc
gtcaacggcctggtggctctggtcggctccgagacgtccctcgttcagcaaacgagtgag
tcggagctttccgcccagcagcagagccgtctgaatgaggtcatccgggccatcacacag
atcgtaaccttctcagcagccatcggtctccagtccaacagtgcctgtttggtgggtcat
ctgcatctggcccacatgtccaccagtcacagccacacagcagtcccccaggacttcagc
tacctctcagagaaaagcctcatcagatccatcgttgacgtcctctcagaggcgggaaaa
aaaggcccagagtttgctcatccggctctggttaaatctgctctgactcctctggcgtcg
gtcggcgccagcttccagtacccgcccgtcaactggagcgccatcctgtctcctctgatg
aggctcagcttcggagaggatgtccagcatcagtgtgtgctgctggcagtgagtcaggct
cagtcctcccagagctcctccctcttcctgggctcctggctgtcgccgcctctagtgcac
agtctcagttaccagacccgggcccacctgctggacagcctgggctcgtggatgaagcac
gtagctgaggacaagctgcaggtccacatggagactctgggcctgcagcagttccaggag
gacctgcggccccagcgtctggccctgtgccggtccctgctacagggcctggctcgggcc
atggggctcccaaacccccccaacagctgctggaccatcctgagctccaccacggagaag
atcttcagcctgctgcccaaccagatccaggatgatgaggtggatttgtacgtgggaatc
tctaaatgtctgtctgagatgtccgatgccgagatcgagagaatcacacgagtcacagag
gctcagatggagaagacctgcttcgtcctggctcacttgacctcccagggccgcgttccc
ctcctggggctcaatgacgtcatcgccggcgtgctccgcggttggccgagccgccgcgtc
ggctggctcctcctccagaccttctaccagtgccgcctggccgccagccccagcacaggc
gtttccaaacggatggagtggctgctggagctgatgggacacatccggaatgtggcctac
ggtgcaaccgccgtcacatgtggagacaccaaactggccacagacttcctgttccaggtc
tttgctgctgccgtggtctcctggggcgaccacgccatgcctctcctcctcggcatcagg
gccacgtggttcccgtggcaacccgcctccaagccccacgctctgcaacacgctttgtat
ggcgaggagtcgctcgcggacctcgccctgccgcagtgcctgctgggtatgccccgcagc
ctggcgctgctgctggacaaggagccctggagcagccagacgaccaagttcatcgactgg
ctgttcagcatcacagaagctcccgaacagagtctgtcagccacgaccgtcggcaccgcc
aaagccggactgttggctctgaagtcctctgccgagttcaagaagaaagctgtgtggact
agagcgtacggatggtag
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