KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130211516
Entry
130211516         CDS       T09868                                 
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04382  Cornified envelope formation
pswi04510  Focal adhesion
pswi04512  ECM-receptor interaction
pswi04518  Integrin signaling
pswi04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    130211516 (col4a6)
   04518 Integrin signaling
    130211516 (col4a6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    130211516 (col4a6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    130211516 (col4a6)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    130211516 (col4a6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pswi04147]
    130211516 (col4a6)
   00536 Glycosaminoglycan binding proteins [BR:pswi00536]
    130211516 (col4a6)
Exosome [BR:pswi04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   130211516 (col4a6)
Glycosaminoglycan binding proteins [BR:pswi00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   130211516 (col4a6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 130211516
NCBI-ProteinID: XP_056298270
LinkDB
Position
21:3577934..3673617
AA seq 1694 aa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NT seq 5085 nt   +upstreamnt  +downstreamnt
atgaaactcctgatctgcgtgatggcggtcgccttggcggtgggatctgcgcacggaggt
acatccggcgagccgtgcgccggcagaaactgtggcgaaggatgcaggtgcaacccggag
aaaggcagcaggggtcgcccggggaccctcggtgatgtgggtcagagtggacccgagggc
ccccgtgggggtctgggcccctccgggcccaaaggagagaagggccacaatggactgaaa
ggaccgtccggttccaaaggagacaaggggccaatgggggtccccgggttccgaggaact
gacggagtacctggtcaccccggtcaggccggaggacgaggaccggtgggtctggacggg
tgtaacggaacccgaggagaaaccggagcgcccggatacgggaccggagggcctggacta
ccgggatttgccggtccttatgggccgaagggtcagaagggagaacctcgattcatctct
cgtggaaacggtctcacgagttacccaggatcgcaaggagcaggaggtcaacctggtagc
ccaggtccgactggtccttccgggtctccgggttcgaatggtcctgaggggttctccggc
ccgcctggcccacccgggcctccaggaccaatgggaagccagagtgacgggtacgtcgga
gagaaaggagacaagggcgacgtgggtcttcccggacccagcgggacccccggagacggg
tcgctacgaagtgaacaaactctcactatctacaaaggagacaagggggaaccgggcctg
agaggcatcagaggcttcaccggaccggttggcagacctggacctttcggctatcccggt
gaatttggagagaagggcatccccggataccccggggccagaggtcttcctggtttcaac
ggcccccccggatctacaggacaacagggactgatgggctctcccggttactcggggcaa
tcaggatacccgggaccaaagggagacctcggcggccccggggcccccggaccccccgcc
tacgtcagtgggtcgaacacagctgttcaaggaccgacaggtaacctgggtcacaacggc
ctccccggggcccccggcgaccagggattcccaggatacgcgggacccccgggccgacca
ggagtcggtggttttggcaccggtttttccggatcccccggttttcccgggaccgccggc
cccaagggcgagaaaggcaaccaaggcataccgggctacggcttcgaaggaggacccggc
agccccggacaccccggacccgccggcaaccccggacctcagggccccgctagtactccc
ggacgtccatcgcacatcccaggagagcctggacctcctggccccagaggagagccgggg
gacaccggatacaatggcggcagaggtgacgctggcgactgccactgccgtggaggaggc
acctcggggtcccgcgggccccccggaggccccggggtcaacggcagccccggctacggc
ggacgaaagggcgagctgggcgacggcggctcgccgggcttccacggcgtgccgggttct
cccggtcgccccggtggcagcggttactttgggcgtaagggcgagaaggggacgtccttc
taccctaacccgggcttcggggtgaagggcgatctcggccacaccgggccctccggccct
catggagaacggggaacgcccggcagagacgggctgcccggcttccccgggacccccggc
cccccgggcgacggcggctacggcacgttgggagagaaagggttcccggggttccctggg
gccaaggggcggcccgggggtcccggggaacccggcaacggctacgccgggacgcccggc
ttccgcggggagcccggagagcccggtattcacgggtttccagggcaaccgggtttaccc
ggaccaaaaggtgaaaacagctgtgagggggttaatcacgccggagagggaacgggccaa
gtgttaccctgctccatacccggtgagggaggagaccccggttaccccggagtacccgga
cgaccaggtctcaagggggaaccgggcttcccaggaaaccccgggcgacccgggtttgac
ggagccaaaggagacgtcggagaccacggttctggaggccggcctggaccccaaggtttc
cccgggcccagaggggaccccggtctcccaggcggtcccggacagagctttgacggcggc
cgggggaagggcggcctcccggggcgacccggggccaacggtcagcccggagaggttctg
ggagccacacccggcggcccgggacgcaacggactaccggggacccccggagacaagggc
cagcccgggaccccgggaggttctggattacccggtggcggcgggcgcttcggcgttccc
gggctgaagggcgagcgcggcgccgacggctaccccggcagcagcggcctccccggcctc
ccgggcgagcccaccttcggcattcccggtcggcccggatctcccggcgccagcggactg
agcggatcaccaggtttccccggtcgtaaaggagaacatggagatccgggtttcccgggg
ccggctggaatgaagggaaccccgggacacaccggcacccccggatcagtgggaccgagg
ggaccccccggaccaccgggaccgggaaccagagagggaatcccgggaacgccgggaagg
aagggcgagagaggcttcgccggactgatgggtttccctggacaaccaggtcgacccggg
agctcagggttccctggggtgaaaggcgagtccgggggccccgcaagagacggactgccc
ggcggtccgggattccccggacagaaaggtgagagaggatactccggtctccccggctcg
cccgctcgtcctttccgacaagagtttgtggagagaggagaacccggaaaccccagtggc
aacggccttcctggcttccccggaccccgaggtgacaagggtctgtctggtccgcccggc
cgtcagggtctgcctggacttcccggttacgccgagcaaagtaaaggacagccgggacaa
cgcggttacccgggacaaccgggaaaccccggtttccccgggccgaagggagaatatgga
atcatgggattccccggcacgtcaggacctcggggtgacgacggttcggccggtttcccc
ggcaaccctggagaatttggtcgttccggtggaaaaggtgcacccggagaaagctacggg
taccccggaggtccaggagctaaaggccagcccggagggccaggcttcccaggtggccgc
ggcaatgacggcacccccggcgacaacggctttcccggagttccaggtttctctcaagtg
aagggaagtcctggtggtggggggcggcctggaataatgggatcccctggtttccccggg
cccacgggccaggccggctacccgggaaggagaggcgaagacgggcctcctggtcatccc
gcaggtcatggaggccccggtgccaaaggtttgccaggtccccccggtctggatggactc
aatggcctcggtggacccaaaggactccctggaaccccaggtgggagtggaggcggcctc
ccgggttctcctggtgttccgggtttcaagggggagcgaggcgtctcctacccgggaggt
ccaggctacaacggaccgaagggggagagaggaaactcaggtggtcctggacgcgcaggg
ttccccggtctgcccggacctcctggtcccactgtggggtcagatgttcccggacctttg
ggaaaccccggtctgcctggactggatggagagtatggtctccccggtccccaaggtcct
cccggccctcctggtcccggcacagccgatggggaccgcggtgactccgggctcccgggg
ttccccggcggccccggcaggaaaggagacccgggcatccccggaggccccggcctcccc
ggcagctccagcttcaaaggaggacgaggtgagaccggctacagcggaggtcccggtctc
aagggttaccccggtgaccccagttactatggaaacaaaggagccaaaggagtacaaggc
cgtcctggtcgtgccggtagcccggggctcacagcgatagcccagccccccggcccgccg
ccctacggagagatgggtttccccggtggagccggcggttccggtggccccggagacgcc
ggtcagtttggactaccgggacgtggagggtctaagggtcgtcccggtccggtgggtaaa
cttggcagaaccggatctcctggttttcctggaccaatcggcgacgccggaccccccggg
ttccccggagccactggagagcaaggacccaccggcaaagccggacgtgccggctccccc
gggggcgtcggccgcagccacagcatcggctacacgctggtgaagcacagccagaacgcc
caggtgcccatgtgcccacagggcatggccaagctgtgggacggctacagcctgctgttc
gtggagggtcaggagaaggcccacaaccaggacctcggccagccgggctcctgcctgccc
aggttcagcaccatcccgttcctctactgctcccccaacgagatctgcttctacgccagc
cgcaacgacaagtcctactggctgtccaccagcgcgcccatccccatgatgcccgttgcc
gagcaacagatacagccgtacatcagcaggtgttctgtgtgtgaggctccctctctggcc
gtggcggtccacagtcaggacatgaccatccccacctgtcctccgggctggaggagtctg
tggataggatactccttcctcatgcacacggcggccggcgccgagggcggcggccagtcc
ctggcgtctcccggctcgtgcctggaggacttccgcgcgacgccgttcatcgagtgcaac
ggcgccaaaggcagctgccacttcttcgccagcgattacagcttctggctcaccaccgtg
gagcccagccagcagttcgtcttctcgccggcgcagcagaccctgaagggggggcaggag
cgctcccgggtcagccgctgccaggtgtgcagcaagctgttgtag

DBGET integrated database retrieval system