Pseudoliparis swirei (Mariana hadal snailfish): 130211581
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Entry
130211581 CDS
T09868
Name
(RefSeq) FRAS1-related extracellular matrix protein 2-like
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130211581
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
pswi04091
]
130211581
Lectins [BR:
pswi04091
]
C-Type lectins
Lecticans
130211581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Cadherin_4
Big_9
Motif
Other DBs
NCBI-GeneID:
130211581
NCBI-ProteinID:
XP_056298395
LinkDB
All DBs
Position
3:complement(5530131..5602148)
Genome browser
AA seq
3129 aa
AA seq
DB search
MLFRGLLLCFSCVTGLVVAQPDSSGLFYALRSELSEDAILVANSGIRVPIGRSVFIDPVN
DLVIQTQPGDRCSITVLDNDPLSQRPGHLAPKKFPCDFGPNDLTYVHYGSRSPAEDRVRL
QLRYDAQTETVIIPFMMEVEVVFTQLELLTKNMPLTVHHLKATSNPIDRKVLEFTYDRDS
TTCEVTSLTSGSPLPRYGRLIDGGKLSKMMDCDEFTRADIRYQHTFDRKSPNRDYVPMVV
ELHDKEGNRVKREYFHLMIRIKAGEENTPPKPSFVSMMMMEISQFVMTALTPDMLAAEDA
ESDPDELIFNITSPLSYEEGYVVSTDDRNLPITSFYQRDLRDLKIAYQPPSLDSDTERIF
QLEFEAVDTDGAVSDPFAFMIVVKPMNSLAPVVTRNTGQLLYEGQSRPLFGGRNLEIGDE
DDLDAVTVTVVAGLRHGDLVVLGSRGKLFTPADLATGVVVYQHDGSDTYSDNIVFKVSDG
KNDVEFLFPITIVPTDDEPPIINANTGLALFENQMTPISPLMLSAADIDSEDSTIKFAVA
APFSTVGTVLLRQSDAPEDPSSWRFNAEDEVYEKEVTEWLQKDITDGRLFYGHTGPHSTD
TITDHFVFTVRDDNDPPNESGESAFIIHVLPVDDLPPELFPGTTLQMTVQEFRLTHLNKE
VLRYTDLDSEDRDLKYTVIQPPMDTDENNPVAFGSLILTDSPDTEVTEFTQAQINHHKIS
YGPPDVELGITAHVVQFRYTVEDTAGNGVDGAFTVYLQPVNNKPPQITNTGFTVFERGMH
IIGIAELDATDLDTESKQITFTLSQPAKYGQVQVAFTDLEKKGLFRLEDISAGKTSYRHG
GEETMSDEFQLDVSDGFHVVTVTVKVHVTPVDDETPTVNLPPGTIGSHMDVLENGATEIT
TNVIQGRDDDTDDLLLTFIVEDPPVRGEILVKGVPAAIFTQADIINGVVVYAHTSGEIGL
FSEQDGFNLTLTDMSHDWTVGGNEVNGVHVQVTILPVDSQAPEVGVGIQFSVIEGKKNAI
GPQHLNADDNDTPTDDILCTIIVQPTAGYVENVSPAPGSEKSRSGTAISAFTIRDIREGN
IHYVQSIHKGVEPVEDRFTFRCSDGINFARNHFFPIVIIPSNDEKPEIYLRDMVVMEGMN
IVIDTPILNGADADVPPEELMFIISKPPKHGAILNQLSTGSVLVTNFTLEQIREASTIIY
EHDDSETTEDSFDVTLTDGKFSVQKTAVVLIIAVDDETPRMLVNDGVEVEIGETKEINGK
VLKATDLDSDDASLTYIPRFGPGQGVLQRKSPSGSPENITLGMNFTQADIDAGLILYTHS
GQEGVRDLVKFDVTDGMNPLIDRYFYITVGSIDTVFPDVVSKGVSLREGGRVTLTTDLLS
TTDLNSPDEHLIFTVTRAPVRGHLECTDAPGMPVAAFTQLQLAGSKIYYIHTSDDEVKMD
SFEFEVTDGYNPIFRTFRVSIVDVDNKKPVVTVNSLVVTEGHMKLITPFELTAEDQDTAE
GLLRFSVTQLPVHGKLLYNRSTPVSSFTKQDLNENLISYRHDGTESSEDSFSFTVADGTH
TDFYVFPDTVFETRRPQTMKITIVAVDDGIPQMVVNKGAPALRILATGHLGFPISSKVLR
AEDRDSGPAAVTFRIAGQPKHGYIVNLAHGNNSINTFSQADIDDLNICYVLRKEENATSD
LFHFSVEDKGGNTLKGKQFRLDWSWISLEKEYYVVDEEDTFLEVVLRRRGYLGETSFIGI
GTQDGSAKKDEDFKGKSQRQVQFNPGQTRATWRVRILTDGKYEQAETFQILLSKPVMGVM
EFPAAATVEILDPSDESTVFLPEQIHTVEEDVGELFIPVHRSGDVSQELMVVCHTQQGSA
AGTIPNTVLSYSDYISRPEEHVSVLRFDKGEREKHCRVVIIDDSLYEGEESFNVTLSLPV
GGRLGTHYPTAKVNILEDMDDAPVFYFGEVKYHVDESDGYVEVKVWRTGTDLTKTGTVTV
RSRKAEPVSAEAGVDYVGISRNLDFAPGVSVQTFRVTVLDDLGQPELEGTERFELVLRMP
MNGILGEPGKATVFINDSVSDLPKVQFREPVYAGEESDGRITATLYRSGDIRHTSTVRCY
TRQGSAQVASDFDERPNTETSIITFSPGDTEKPCVLSLVDDTLYEEGEEMRLVLGNPKSD
SPFGASVGALNETVLKIKDTADKPIIRFLQTKFSVSEPKEAGAAATVRIPVVRVGDASKV
SVVRVHTKDGSAISGVDYFPVSQDIEFKEGDKEHVVEVEVLFDGVREMREAFTLHLKPDE
NMVAETQVTKMIVYIEEANSMADVTFPSLPHVVSLLYYDDVARTPDNLHPAAGYPVICVT
ACNTKYPDYDKTGSICVSEHINDTLTHYRWLISAPAGPDGVTSPMREVDFDTFFTSSKMI
TLDSVYFQAGSRVQCAARAVNSNGDEGLELSSPVITISREEGMCQPRKMGTVGAEPFSAK
LRYTGAEDPKHPNLIKVTVTMPHMDGMLPVVSTRPLMNFELTLSPDGTRVGNHRCSNLLD
YDEVTTGHGFITASTRSSESPGDAAPYQFSGSLRGNSTLRFYRNLNLDACVWEFTSYYHM
SELLTDCGGTIGTDGQVLNLVQSYVSLRVPLYVSYVFHSPVGTGGWQHFDLQSELRLTFV
YDTAILWKDGIGSPPKAELQGSLYPTSMRINEQGRLVVNFRTKARFRGLFVGSHPGGKIK
KDATFMSSLVMSADHPGLTFNLTLVRSEPTYDQPVQQWTFTSDFAVRDYSGAYTVKLTPC
TTAQKVEYTLPPVCSPREQVTFDLDIRFQQVSDPVAVEFSLNTQMFLLSKRSLWLSDGSM
GFAQETDVAFSEGDTIYGRVMVDPVQNLGASFFCSIEKVFLCTGADGYVPKFNPTRFEFG
CLADSPSLLYRFKILDKAQPETQARVFGDVRFNAALAADDPSAMALVRQPGSDGFRLDST
AMFQVAAGREWYIHTIYTVRSKENANRGIGKRSLEYHAVVATGDDDDDIASTPPRGRGHR
SGRSAGDEAPEVAGDIGADDDRGTNIMHIALDRAKRQAGGSNEPFPDGLGPSELTAGGGE
EGLVTTAGALVGLLLTVLVAVAVALVLRSRRKGGKEGWREGVEEVVKGSVSTEPMLVVRM
QDCHNSSEV
NT seq
9390 nt
NT seq
+upstream
nt +downstream
nt
atgttgttccgtggacttctcctgtgtttctcctgtgtaacaggtctcgttgtcgcgcag
cccgacagctctggactattttacgcgctgcgttcggaactgtccgaggacgcaatcttg
gtggccaacagcggaatacgcgtgcctatcgggcggtcggtgttcatcgatcccgtcaac
gacttggtgatccaaacgcagccgggggaccgctgcagcatcacggtgctggataacgac
ccgctgtcacagagaccggggcatctcgctcccaaaaagtttccgtgtgatttcggtccc
aatgatttgacgtacgtgcactacggctcgaggagtcccgctgaagaccgagtgaggctg
cagctcaggtatgacgcgcaaaccgaaaccgttattatcccgttcatgatggaggttgaa
gtagtttttacgcagctagaattactcaccaaaaacatgcctctcactgtccatcacctg
aaagcgaccagtaaccccattgacaggaaggttttagagttcacttatgacagagactca
actacatgtgaggtcacgtccctgaccagtggcagcccactgcccaggtacggaaggctc
atcgacggggggaaactttccaaaatgatggactgtgacgaattcacgcgggcggacatc
cgctaccagcacacattcgaccgcaagtctcccaacagggactacgtccccatggtcgtg
gagctgcacgacaaggaaggcaaccgagtgaaacgggagtatttccatctcatgattcgc
atcaaagccggggaagaaaacaccccccccaaacccagcttcgtgtccatgatgatgatg
gagatcagccagttcgtcatgaccgccctgacgcccgacatgctcgccgccgaggatgcc
gagtcggacccagatgagctcattttcaacatcacctctcctttatcctacgaggagggc
tacgtggtcagcaccgacgacaggaacctcccgatcacgtcgttctaccagcgagacttg
cgcgacctgaagatcgcctaccagcccccctccctggactcggacaccgagaggattttc
cagctggagtttgaggcggtcgacacagacggggccgtctcggaccccttcgcgttcatg
atagtcgtgaagccgatgaactctctggcccccgtggtgacgcgtaacacgggtcagctg
ctgtacgaggggcagtctcggcctctcttcggcggccgcaacttggagatcggcgacgaa
gacgacctggacgcggtcaccgtcacggtggtggccgggctgcgccacggcgacctcgtg
gtgctgggctctcgcgggaagctgttcacgccggccgacctcgcgacgggggtcgtcgtg
taccagcacgacgggagcgacacgtacagcgacaacattgtcttcaaggtgtcggatgga
aaaaacgacgtggaattcttgttccccattacgatcgttcccaccgacgacgagccgccg
attattaacgccaacaccggcttagcgctcttcgaaaaccagatgacgccgatatctccc
ctcatgctcagcgcggccgatatcgactccgaggactcgactataaaattcgccgtcgcc
gctcccttttccaccgtcggcaccgtcctcttaagacagtcggatgccccagaggacccc
tcctcttggagattcaatgctgaggatgaagtgtatgagaaggaggtgacagagtggctt
cagaaggatatcactgatgggaggttgttttacgggcacacaggccctcacagcaccgat
accatcacggatcattttgtgttcacggtccgggatgacaacgacccccctaacgagtcg
ggagagagtgcgtttataatccacgttttacccgtcgatgacctcccccctgagctgttc
cctggcaccaccctgcagatgaccgttcaggagttcaggctcactcacttgaacaaggaa
gtcctgcgctacaccgatctggactctgaggaccgcgacctcaaatacacagtgatccag
cccccgatggatacggacgaaaacaaccccgttgcgtttggttctttgattctgacggac
agccccgacaccgaagtcaccgagttcacgcaagctcaaattaaccaccataagatctcc
tacgggcccccagatgttgagctgggaattacagcccacgtggtgcagtttcgttacacc
gtcgaagacacggctgggaacggcgtcgacggagcgttcactgtttacctccagcccgtc
aacaacaaaccccctcagatcacaaacacgggcttcacggtgtttgaacgtggaatgcac
atcatcggtattgccgagctcgacgccaccgacctcgatacagagagcaagcagattacc
tttactctgagccagcccgctaaatacggccaggtccaagttgcattcactgatctagag
aaaaaagggcttttcagactggaggatatctcagcggggaagacgtcatatcgtcacggc
ggggaggagacgatgagcgatgaatttcagctggatgttagcgacgggtttcatgttgtc
accgtgacggtcaaagttcacgtgacgcccgtcgatgatgaaactccaaccgtcaatctg
cctccgggaacaatcggctcgcatatggatgtgctggagaacggagccacggaaatcacg
acgaacgtcattcaaggccgcgatgacgacacggatgacctcctgctgacctttatcgtg
gaagatcctccagtgaggggtgaaatattagttaaaggagtgcctgctgcaatttttacg
caggctgatattattaatggcgtggttgtgtatgcacacaccagtggggagattggtctc
ttctctgagcaggatggcttcaatttgactctcacagacatgtcccacgattggacagtg
ggtggaaacgaggtcaacggggtccacgttcaagtcaccatccttcccgttgacagccag
gcccctgaggtcggagttgggattcaattcagtgtcattgaagggaagaaaaacgccatt
ggccctcagcacttaaacgctgatgataatgacactccaacggatgatatcctttgcacc
atcattgtccagcccactgccggctatgtggaaaatgtatcacctgctccaggctcagaa
aagtccaggtcaggaacggctatcagtgcttttaccatcagagacatccgggaggggaat
atccactatgtgcagagcattcacaaaggggtcgagccagtggaagacaggttcacattt
aggtgctctgatgggataaatttcgcacggaaccatttcttcccaattgtcatcatccca
tcgaatgatgaaaagcccgagatttatttgagggacatggtcgtgatggagggaatgaac
attgtcatcgacactccgattctgaacggggccgatgccgacgttccgcccgaggagctg
atgttcatcatttccaaacctcccaaacacggtgctattttaaaccagctctccacaggc
tccgttttggtgactaatttcactttggagcaaatcagagaggcgtcgactattatttat
gagcatgatgactcggagaccacggaggacagcttcgatgtcactctgaccgatggaaag
ttctccgtgcagaaaacagccgtggttctgatcattgccgtcgacgacgagacccccaga
atgctcgtcaacgacggcgtggaggtggaaatcggggagaccaaagagatcaacggtaaa
gtgctcaaagcgacggatctggattcagatgacgcttcgctgacgtacatccctcggttc
gggccgggtcagggtgtcctgcagaggaaatccccatcagggtctccggagaacatcaca
ctgggcatgaacttcacacaggctgacatcgatgcggggcttatactttacacccacagc
ggtcaggagggcgtccgagacttggttaaattcgatgtcacagatggcatgaacccacta
attgatcgttacttctacatcacggtgggcagtatcgacacggtgttccccgatgtggtc
agcaaaggcgtgtctctgagagaagggggccgagtgacattgaccacagatcttctcagc
acgactgatctcaacagccccgatgagcatttaatcttcacggtcacaagggcccctgtc
agaggtcacttagagtgcactgatgctcctgggatgcccgttgctgcttttactcagctc
cagctggccggcagtaagatttactacatccacacctcggacgatgaagtcaaaatggat
agttttgaatttgaagtcaccgacggctacaatcctattttcagaaccttccgagtctcc
atcgtggatgtggataataagaaacctgtcgttactgtgaatagtttggtcgtcacagaa
gggcatatgaagctgattacgccgtttgagctaacggcagaggaccaggacacggctgag
gggctgctgagattctcagtcacccagctgccggttcacggtaaacttctttacaaccgg
tccacgcccgtctccagcttcaccaaacaagacctcaacgaaaacctcatcagctacaga
cacgacggaacggaatcctcggaggactccttctccttcaccgtcgccgacggcacgcac
acggacttctacgtgttcccagacaccgtgttcgagactcggcgccctcaaaccatgaag
atcaccatcgtggccgtcgacgacggcatccctcagatggtggtgaataaaggtgccccc
gctttaaggatcttggccacgggccacctggggttccccatcagctccaaagtgctgcga
gcggaggacagagacagcggcccggccgccgtgacgttccgcatcgccgggcagccaaaa
cacggctacatcgtgaacctggcacacgggaacaactccatcaacacatttagtcaagct
gatattgacgacctgaacatctgctacgtgttacggaaggaggaaaatgctacttctgat
ctcttccatttctccgttgaggataagggtgggaacacgctgaagggaaagcagttccgt
ctggactggtcctggatctctctggagaaagagtactacgtggtggacgaggaggacacg
ttcctggaggtggtactcagacggagaggctacctgggagaaacgtctttcatcggcatc
ggcacccaggacggaagtgcgaagaaggatgaggatttcaagggcaagtcccagaggcag
gtccagttcaacccgggacagaccagagccacgtggcgggttcgcatactgactgacggg
aagtacgagcaggcggagaccttccagattttgctttcgaagcctgtgatgggagtgatg
gagttccctgccgcagcaacagttgagattctggatcctagtgacgagtcgactgtgttc
ttaccggagcagatccacaccgtggaggaagacgttggcgagcttttcatccccgtacac
cgcagtggagacgtcagccaggagctcatggtcgtctgccacacgcagcagggttctgcc
gcaggcacgattcccaataccgttctgtcttactcggactacatctcccgtccagaggag
catgtcagcgtccttcgtttcgacaagggtgagagggagaagcactgtcgggtcgtgatt
atcgacgactctttgtacgagggagaagagagcttcaacgtcactctgtcgctgcctgtc
gggggccgtctgggaacgcactaccccaccgccaaagtcaatatcctggaagacatggat
gacgctccagtgttttactttggagaggtgaagtatcacgtggatgagagcgatggatac
gtggaggtaaaagtgtggaggacggggaccgatctgaccaagaccggcaccgtcaccgtc
cgctctcgcaaggccgagcccgtctcggcagaagccggcgttgactacgtgggcatcagt
cgtaacctggacttcgccccgggcgtcagcgtgcagacgttcagggtcaccgtcctggat
gaccttggacaaccggagctggagggcaccgagcgctttgagctcgtccttcgcatgccg
atgaacggcatcctgggagaacccgggaaggctaccgtgttcatcaatgactctgtgtct
gacttaccgaaggtacagttccgcgagccagtgtacgccggcgaggagagcgacggtcgg
atcacggcgacgctgtaccgcagcggcgacatcagacacacgtccaccgtccgctgttac
acccgccagggttccgctcaggtcgcctccgacttcgacgagcgacccaacacggaaaca
tccatcatcactttctcgccaggcgacacggagaagccgtgcgttctctcactggttgac
gacacgctgtacgaggaaggagaagagatgcgcttggtcttggggaacccgaagagcgac
tccccgtttggagcgtctgtgggagctctgaatgagaccgtgctgaagatcaaggacaca
gctgacaaacccatcattcgttttttgcaaaccaagttcagcgtcagcgaaccgaaggaa
gcgggcgccgcggcaaccgtgaggatccccgtggtacgagtgggcgacgcatccaaagtg
tcggtggtccgcgtccacaccaaagacgggtcggccatctcaggggtggactacttcccc
gtgtctcaagacattgagttcaaagagggcgataaggaacacgtggtggaggtggaggtg
ctctttgatggcgtccgagagatgagggaagccttcacgctccacctgaagcccgatgaa
aacatggtggctgaaactcaggtgactaagatgatagtttacatcgaggaggccaacagc
atggcggatgtcaccttcccctctctgcctcacgtggtgtcgctgctctattacgacgat
gtcgccaggacgccagacaacctgcatccagcagccggctaccctgtcatctgtgttaca
gcttgcaacacaaaatacccagactatgacaagacgggctctatctgtgtcagcgagcac
atcaacgacaccttgacccactaccgctggctcatcagcgccccggctggccccgatggc
gtcaccagtcccatgagggaggtggactttgacaccttctttacgtcctccaagatgatc
acactggactcggtctacttccaggcgggctccagggtccagtgtgctgctagagccgtt
aattctaacggggatgagggtttagagctcagtagccccgtcatcactatcagccgggag
gaaggtatgtgtcaaccacgtaagatggggaccgtcggcgcggagccgttctccgccaag
ctgcgctacactggagcggaggacccgaaacaccctaacctcatcaaagtgactgtcacc
atgcctcacatggatggcatgctgccggtcgtctccactcgccctctcatgaactttgaa
ctgaccctgagtccggacggaacccgggtcggaaaccaccgctgctccaacttgctcgac
tacgatgaggttaccaccggtcacggcttcatcaccgcctcgacgcggagctccgaaagc
ccgggcgacgcggcgccctatcagttcagcggctctctgcgggggaacagcacactgcgc
ttctacaggaacctcaacctcgacgcctgtgtctgggagttcaccagctactaccacatg
tctgagctgctcaccgactgcggaggcaccatcgggactgatggacaggtgctgaacctg
gtccagtcctacgtgagcttgcgcgtgcctctgtacgtgtcctacgtgttccactctccc
gtgggaactggcggctggcagcactttgacctgcagtcggagctgcgcctcacgtttgtg
tacgacacggccatcctgtggaaggacggcatcggcagtcccccgaaggccgagctacag
ggttctttgtatccaaccagcatgcgcatcaatgaacagggacgtttggtggtgaacttc
cgcaccaaggctcggttcaggggtctgttcgtgggctctcatcctggtggcaaaataaaa
aaagatgcaaccttcatgtcctccctggtgatgagtgcggaccaccccggcctgaccttt
aacctcaccctggtgaggagcgagcccacctacgaccagccggtccagcagtggaccttc
acctctgactttgctgtgagggactactccggggcctacacggtgaagctgaccccctgc
acaacagcccagaaagtggaatacactctcccacctgtgtgcagtcccagagaacaagtc
accttcgatctagacatcagatttcagcaagtgagcgacccggtggcagtggaattcagt
ctgaacactcagatgttcttgctgtccaagaggagcttgtggctctctgacggctccatg
ggcttcgctcaggagacggacgtggccttttctgagggcgatacgatctacggccgtgtg
atggtggaccccgtgcagaacctgggggcctctttcttctgtagcatcgagaaggtgttc
ctctgcaccggcgccgacggatacgtaccgaagttcaaccccaccaggtttgaattcggc
tgcctggcggactctccgtcgctgctctatcgatttaagattctcgacaaggctcagcca
gaaactcaggcccgcgtgtttggtgacgtccgttttaacgccgcgctggcagcggacgac
ccgtcagccatggccctcgtcagacagcccggctcggatggctttaggttggactccacc
gccatgttccaggttgctgcgggccgcgagtggtacatccacactatctacacagtccgc
tccaaagagaacgcaaacagaggaattggaaagcgcagcctggagtaccacgccgtggtt
gccaccggcgacgacgacgacgacatcgcctcgaccccgccgaggggccgaggtcaccga
tccgggaggtcggccggcgacgaagccccggaggtcgccggcgacatcggggcagacgac
gaccgcggcaccaacatcatgcacatcgcgttggaccgcgccaagagacaggcggggggg
tcgaacgagccgtttcccgacgggctgggacccagcgagctgaccgcggggggcggcgag
gagggcctggtgacgacggcgggggcgctggtggggctgctgctcaccgtcctcgtcgcc
gtcgccgtggcgctggtgctgagatccagacggaagggcggcaaggagggctggagggag
ggggtggaggaggtggtgaaggggtccgtcagcacggagcccatgttggtggtgaggatg
caagactgccacaacagctccgaggtctga
DBGET
integrated database retrieval system
