Pseudoliparis swirei (Mariana hadal snailfish): 130211608
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Entry
130211608 CDS
T09868
Symbol
chrnb1
Name
(RefSeq) acetylcholine receptor subunit beta isoform X1
KO
K04812
nicotinic acetylcholine receptor beta-1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
130211608 (chrnb1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pswi04040
]
130211608 (chrnb1)
Ion channels [BR:
pswi04040
]
Ligand-gated channels
Acetylcholine (nicotinic)
130211608 (chrnb1)
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Ortholog
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GFIT
Motif
Pfam:
Neur_chan_memb
Neur_chan_LBD
Motif
Other DBs
NCBI-GeneID:
130211608
NCBI-ProteinID:
XP_056298446
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Position
21:complement(12251208..12279914)
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AA seq
542 aa
AA seq
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MPIQICSACYCHQLYSRSCRGLSYAKRDECCIAAEYKCVSPSNTEKERVEMKQEFMYETA
VDCNRLGFGASDVEKALIRTLFTGYNLKVRPAANPEDRVVVRVGMVLSSFVGLNMKNEEM
STTVFMNLEWTDYRLSWKPKQHDGIEVMRLPAGKVWLPDIVLINNNDGVFDVALHVSVQA
YSTGRVTWTPPALYCSSCGVKVEYFPFDWQICTMQFRSYTYDSTEIDIQYALDSKGKEIR
EIELDEAYIEGGEWHITNMPCRKNMNDDLYEDMTFYLIIERKPLYYVLNIILPCLLITII
AIFNFYLPPDAGEKMGLSINVLLTLTVFLLLLADKIPETSLGVPLIVNYIMFTMILVTFS
VIFSVVVLNLHHRSANTHRMPMWIRKIFIHLLPPYLGMLRPKVETPLSLEIMPRREKKMI
TISKVADEYFIRKPDSSILFPKPHRFQPDGMCTDMRKFIDGPSSYLTLPDELKSAIEAVT
YIAQALQNEKDSNVLKEDWQYVAMVVDRMFLWIFVVFTTVGTLAIFADASFNQTPTDPFK
AS
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgcccattcaaatttgctctgcgtgttactgccatcagttatattcacgatcctgccgg
ggcctcagctacgccaaacgtgatgaatgctgcatcgccgctgaatataaatgtgtctca
ccttccaacactgagaaagaaagggtggaaatgaagcaggagtttatgtatgaaaccgct
gtggactgtaatcgtttgggtttcggtgcgtctgacgtggagaaggctctgataaggacg
ctctttaccggctacaacctgaaggtgcggccggcagccaaccctgaggatagggtggtg
gtccgtgtggggatggtcctttcctccttcgttggactgaatatgaaaaatgaagagatg
agcaccaccgtgttcatgaacctggagtggacggattatcggttgtcatggaaacccaag
caacatgatgggattgaggtgatgcgtctacccgctgggaaggtttggctgcctgacatc
gtcctcataaataataacgacggcgtgttcgacgtcgcgctgcacgtcagcgtccaggcg
tacagcacgggccgagtgacctggacgcccccggcgctctactgcagctcctgtggagtg
aaggtggagtacttccccttcgactggcagatctgcaccatgcagttccgctcctacacc
tacgactccacggagatcgacatccagtacgcgctggactccaaaggcaaagagatcaga
gagatcgagctggacgaggcttacatcgagggcggcgagtggcacatcacgaacatgccg
tgcaggaagaacatgaacgacgacctctacgaggacatgaccttctacctcatcatcgag
aggaagcccctgtactacgtcttgaacatcatcctcccctgcctcctcatcaccatcatc
gccatcttcaacttctacctgcctcccgacgcaggagagaagatgggtctgtccatcaac
gtgttgctcaccctcaccgtgttcctgctgctgctggccgataagatcccggagacgtcc
ctgggggtcccgctcatcgtcaactacatcatgttcaccatgatcctcgtcacgttctcc
gtcatcttcagcgtggtcgtcctgaacctgcaccaccgctcggccaacacccaccggatg
cccatgtggattcgcaagatcttcatccacctgctgcctccttacctgggcatgctgagg
ccaaaggtagagacccccctctccctggagatcatgccccgtcgagagaagaagatgatc
accatcagcaaggtggcggatgagtacttcatccgcaagcccgactcctccatcttgttc
cccaagccccacaggtttcagccggacggtatgtgcacggacatgaggaagttcatcgac
gggcccagcagctacctcacgctgcccgacgagctcaagtcggccatcgaggccgtcacg
tacatcgctcaggctctgcagaacgagaaggactccaacgtgctgaaagaggactggcag
tacgtggccatggtggtggaccgcatgttcctctggatcttcgtcgtcttcaccaccgtg
ggcaccttggccatcttcgctgacgctagcttcaaccaaacccccaccgaccccttcaag
gcctcctga
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