KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130211773
Entry
130211773         CDS       T09868                                 
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
  KO
K06237  collagen type IV alpha
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04382  Cornified envelope formation
pswi04510  Focal adhesion
pswi04512  ECM-receptor interaction
pswi04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    130211773 (col4a5)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    130211773 (col4a5)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    130211773 (col4a5)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    130211773 (col4a5)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pswi04147]
    130211773 (col4a5)
   00536 Glycosaminoglycan binding proteins [BR:pswi00536]
    130211773 (col4a5)
Exosome [BR:pswi04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   130211773 (col4a5)
Glycosaminoglycan binding proteins [BR:pswi00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   130211773 (col4a5)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 130211773
NCBI-ProteinID: XP_056298746
LinkDB
Position
21:complement(3543891..3574473)
AA seq 1677 aa
MNTDVKLALLVLALCVAVQRSDSAACHGCVGSKCDCSGVKGGKGERGFPGLTGQPGVPGF
PGPEGPIGGRGEKGSDGPHGLYGPKGIRGPSGLPGFPGTPGLPGLPGQDGPSGPRGVAGC
NGTKGESGFPGNSGIPGQQGRSGPPGLPGQKGDPGDVISTNRFGENGAVGLPGLPGVSGS
PGPAGLQGPLGPPGLQGYEGRSGSPGLPGPKGNMGLNFQGPKGVKGDEGLAGPPGPPGQV
GEQKRSPETEIQRGDKGDPGIPGSHGDSGYPGPPGPSGGHKGNKGEPGEAGKRGKSGKDG
DPGSSGFPGGKGVSGLPGPPGRDGDRGLNGDRGYPGPPGVVLGGQTGGLIGPKGESGFPG
SPGIKGDRGPTGLSGPPGAPGFSGGGGGGGQPGSPGFPGDRGQKGDLGAPGLSLPGQPGR
SGSPGSQGPPGLPGPPGFSTGGQNCVSGGPGRPGVQGERGYQGGSGHKGEKGTTCVNCFG
DTTGISGPAGPAGQPGFPGSPGSTGIKGDRGYPGTPATVGPSGPSGPPGSPGFPGEKGEP
GDALTVSGVRGGKGDTGFPGGPGLPGLDGQPGRDGQPGSSGAKGTPGSQLVKGERGIPGE
NGSPGNPGDRGSPGGPGFGPGGSSGEKGIQGVSGRPGSSGASGAKGEPGLAVAEKGLPGP
RGLDGSSGLPGSPGTSGGPGQNGFPGLPGTKGDPGFPGIGLPGPPGVKGFPGTHGQPGSP
AGPGRPGVDGLPGQPGFPGSKGEPGFGLPGPAGIPGVPGGKGFTGPKGDPGFSGGPGSPG
RSGFDGSPGSKGDSGTPGIPGARGPSGTPTSGSLGQPGSPGLPGPLGPPGFPGSNGGKGD
PGPPGQDIPGLPGDRGSPGFPGSSGSVGTPGPPGGSGRDGLPGLPGQKGDHGPLGTPGPS
GGPGGPGGPGASGFKGDPGFQGRDGNPGGPGFKGDRGEAGLQGPPGTSDPPLLTKGTKGD
PGLPGAPGLSGQKGIPGLSGDPGLSGSDGRPGLPGPPGPKGDPGLSGGPGGPGGPGGKGG
MGEMGFPGPSGQKGLPGQSGRSGSPGQPGGPGFPGAKGEPGSAGVGPPGLSGHKGEPGQS
GFPGSSGLKGTPGSPGLPGISGGQGHKGDLGLPGFQGSPGIPGPKGLDGGPGGPGLNGGP
GRPGESGRPGGPGLPGDKGQAGRDGIPGPSGIKGDPGLPGYGGPGTSGLPGLPGTKGDPG
LHGPSGSPGFPGSKGEAGYPGSPGPSGNGGPAGPQGHALQGPKGLHGTPGPPGRGGSPGP
QGPRGPGGSGGVQGEKGIPGTPGQPGFLGQKGDSGGPGFPGPGGIPGGSGLKGDNGLPGV
PGFPGTKGDPGLSGGSGLSGDPGGVGATGPPGNPGVAPAPFVVKGERGLPGPQGLPGGRG
LPGSSGRDGLLGNPGDSGASGLEGPPGFSGPSGRKGDNGPAGQPGQRGYPGPPGSDGPQG
IPGPPGSLSAAHGFLITRHSQGTEVPYCPDGTGLIYDGYSLLYVQGNERAHGQDLGSAGS
CLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPTSMAPITGEGIKPFISRCSVCE
APAMVIAVHSQTIQIPTCPANWEALWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRSAP
FIECHGRGTCNYYGNSYSFWLATVEPSEMFRKPQSETLKAGNLRTRVSRCVVCMKRT
NT seq 5034 nt   +upstreamnt  +downstreamnt
atgaacacagacgtgaagctcgcgctgctggtcctcgcgctgtgcgtcgcggtgcagcgg
tccgactctgcggcctgccatggctgcgtgggatctaaatgtgactgcagcggagtgaaa
ggaggcaagggtgaacggggtttccccggtctcaccggacagccaggggtcccgggcttc
cccggacctgaggggcccatcgggggcagaggagagaagggaagtgacgggcctcatgga
ctttacggtcctaaaggaatcagagggccctccgggttgccaggatttccaggaacgcca
ggacttccaggtctgcccgggcaggacggaccgtcgggcccgagaggcgttgcagggtgc
aacgggacaaagggtgaaagcggtttcccaggaaattcaggaattcccggacagcaagga
cgatcgggaccaccgggtctgccaggacaaaagggcgacccgggcgacgtgatctccacc
aatcgctttggagagaacggagcggtgggccttcccggactgcccggcgtttctgggtct
ccgggacccgccggtctgcagggtcccctcgggcctccgggtctccaaggctacgagggt
cgctcggggtctccaggtcttcccggaccaaagggcaacatggggttgaacttccaaggg
cccaaaggagtgaagggggacgagggtctagcaggacctcctggtcctccgggtcaagtc
ggagaacagaagcgatccccggagacggagatccagagaggagacaagggcgacccgggg
atccccggttcccacggcgacagcggctacccaggaccccccggtccctctggaggccac
aaaggaaacaagggagagccaggtgaagcgggaaaacgaggcaagtcaggcaaagatggc
gaccccggctcttcaggcttccccggaggcaaaggagtctccggcctgccgggtcctccg
ggccgagacggcgacagaggtctcaatggggaccgcgggtaccccggcccaccaggagtg
gtgctcggcgggcagacgggaggtctgatcggccccaaaggggagtccggcttccccggg
tcccccgggatcaaaggagaccgaggacccaccggtctatccggacctccgggcgccccg
ggattctcgggcggcggtggcggcggcggtcagcccggatctccgggcttcccgggagac
aggggtcagaagggggacctcggtgctccgggtctgtctctgccgggtcagccgggtcgc
tcggggtctcccggttcccagggcccgccggggctccccggacccccgggcttctccacc
ggcggacagaactgcgtctccggcgggcccgggcgtcccggcgtgcagggagagcgaggc
taccaaggaggctccggccacaagggtgaaaaaggcaccacctgtgtgaactgcttcgga
gacaccaccggcatctctggacccgccgggcccgccgggcagcccggtttccctggatct
ccgggctccacaggcatcaaaggagatcggggctacccgggaacgccggccaccgtggga
ccgtccggtccctccggtcctccgggttctccgggattccccggcgagaagggagagccg
ggcgacgccctcacggtcagcggcgtgcggggcgggaagggcgacaccggtttccccgga
ggtcccggtctgcccggtctggacgggcaacccggtcgcgacggacagcccggatcctcc
ggagccaaaggaacacccggctcgcagctggtcaaaggagaacgaggaatccccggtgag
aacggttccccgggtaaccctggagaccgtggttctccgggaggccctggctttggacct
ggggggtcttcgggagagaaggggatccagggggtctcaggaagacccggaagctccggt
gcatctggtgctaaaggtgaaccgggcctggcggtggctgagaaaggtttaccgggaccc
agaggactggacggctcgtcgggactccccggatcaccgggtacatcgggtggacccgga
cagaacggcttccctggcttgccgggaacaaagggggaccctggattcccaggcatcgga
ctaccgggacccccgggggtcaaaggattcccaggtacccacggccagccaggatctcct
gcaggaccaggaagaccgggagtcgatggactccccggccagcccggatttcctggatcc
aagggcgagcccggctttggacttcccggccccgcaggtataccgggagtacccggaggt
aaaggtttcaccggaccaaagggagaccctggcttctccggcggtcccggttcacctggg
cgctctggattcgatggatctccgggatctaaaggtgactccggtacaccgggtatcccc
ggagctcggggcccatctggaacccccacctctggctcactggggcagccaggctcccct
ggactccctggcccacttggaccaccagggttccctggatcaaacggagggaagggagac
cccggccctccaggtcaagacatccccggtctgccgggggacagagggagtcccggtttc
cccggttcctctggatcggtcggtacgccaggacctcctggaggatctgggcgggacggc
ctgcctggactgccaggtcagaaaggagaccacggtcccttgggaaccccaggaccttct
ggaggcccagggggccccggcggacccggcgcttccggctttaaaggtgatcctggattc
caaggcagggacggcaatcctggcggtccgggtttcaaaggagacaggggtgaggccggc
ctccagggacccccagggaccagcgatccaccattgcttacaaaaggaaccaaaggagat
cctggattaccaggtgctccaggtctttccggtcagaaaggcatccccggtctctccggt
gaccccggactgtcagggtccgatggacgtcctggacttcccggaccaccggggcccaag
ggagatcctggtctctcaggcggcccaggaggtcctggaggtccaggaggaaaaggcggc
atgggagaaatgggtttcccaggaccatcggggcagaagggtctcccgggtcagtccggt
aggtcaggctctccaggacagccgggaggacctggtttccccggagccaaaggtgaacca
ggctctgctggagtcggaccacccggactatctggacataagggtgaaccaggtcagtca
gggtttcctggaagttcaggacttaaaggaacaccaggatcacccggtctcccaggtatc
tcaggagggcagggtcataagggcgacctcggactcccaggattccaaggttctccaggt
atccccggtcctaagggtcttgatggcgggcccggtggtccaggcctcaatggaggtccc
ggtagaccaggagaatctggccgaccaggaggaccagggttgccaggcgacaagggtcag
gcaggtcgggacgggatcccgggaccgtctggaatcaaaggagacccaggtcttcccggt
tacggcggacccggtacttctgggcttccagggttgccagggacgaagggagaccctggt
cttcacggcccgtctggcagccccggtttccctggaagcaaaggagaagccggttacccc
ggatcccccggtccttcaggcaacggcggtcctgccggacctcagggacatgctctgcag
ggacccaaaggactccacggaacccccggaccaccaggaagaggaggttcccccggacca
cagggcccccgaggccccggagggagcggcggcgttcagggagaaaaggggattcctggc
actcctggacagccgggattcctgggacagaagggagatagtggcggtcctggattccca
ggtcccggtggtattcccggtggttctggtctaaagggagataacggtctgcccggcgtt
cctggattccctggaacgaagggagaccctggactctccggcggcagcggtctttctgga
gatcccggaggtgtcggagcgactggccctcccggtaaccccggtgtggctccggctccc
ttcgtggtgaagggggagcgaggactccctggtccccagggcctgcctggcggtcgtgga
cttcctggttcttctgggcgagacggactcctcggtaaccccggtgactctggggcctcc
ggtctggagggtcctccgggcttcagcggcccctccggtcggaagggagacaacggaccc
gccggtcagcccggtcagcggggataccccggtccccctggttccgacggtccgcaggga
attcccggtcctccaggatccctctccgcagcccacggcttcctcatcacccggcacagc
cagggtacggaggtgccctactgccccgacggaaccggcctcatctacgacggatactcc
ctgctgtacgtgcagggcaacgagagagcccacggacaggacctcggctcggccggcagc
tgtctgcgcaggttcagcaccatgcccttcatgttctgcaacatcaacaacgtctgcaac
ttcgcctcccgcaacgactactcctactggctgtccacgccggagcccatgcccacgtcc
atggcgcccatcaccggagagggcatcaagccgttcatcagcaggtgctcggtgtgtgaa
gctccggccatggtgatcgcggtccacagtcagaccatccagattcccacttgccctgca
aactgggaagccctgtggatcggatactccttcatgatgcacaccagtgcgggtgcggag
ggctccggccaggcgctggcctcccccggctcctgcctggaggagttccgcagcgccccg
ttcatcgagtgccacggcagaggcacctgcaactactacggcaactcgtacagcttctgg
ctggccaccgtggagccgtccgagatgttcaggaagccccagtcggagactctcaaggcg
ggtaacctccggacgcgcgtcagccgctgcgtggtctgcatgaagaggacgtaa

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