Pseudoliparis swirei (Mariana hadal snailfish): 130211863
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Entry
130211863 CDS
T09868
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi02010
ABC transporters
pswi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
130211863
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130211863
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pswi02000
]
130211863
Transporters [BR:
pswi02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
130211863
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
AAA_23
Motif
Other DBs
NCBI-GeneID:
130211863
NCBI-ProteinID:
XP_056298859
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All DBs
Position
21:10633806..10766742
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AA seq
2241 aa
AA seq
DB search
MGLLAQFTLLLWKNFTLRKRQKVRLVVEVVWPLFLFVILVLVRSTNKPLYKGQCHYLNKA
MPSAGVLPWLQGMTCNINNPCLKYPTLGETPGQVNNFNSSIISGMLIELQTVLVNRSILS
NAQLLADDLDQWGSVLSQTNPGDAQPLILRSILRDNETLSTHLKENLSLPSTVVQSLMNA
EIKFNPMMGIPRPGNLKSVLCEGTDLDQYIQFSSRAEKEAFQNVSCSLDPQQLNNAQQVL
LQNLDARKVLSKVPSALNPNVTDTVTLMGKTTQHALPVIEEMARLQNSMIFKAAGSLDFQ
NNMIGSINMLLCGKKSDISLASPRRMDNKMSVIITSNSSDAFCQNLVDTLEGTPGLRYIW
STFKQLLQGKVLYTPDTPAIRLIVKEANSTFNSLAMLKELADLWDEIGPRISDFLQDSRQ
VNTLRALLANPVVAVVLDRSINNTGWTSELLANFLYNGLPEDRPAGMPPYDWRNAYNATS
EIMKLLSKFLGCLDLDKFEAAPTESHLVSRAQELLKNGTFWAAIVFENLQSNSSHPSPYV
KYKIRMDIENAERTNKVKDKLWSPGARDNPFNDMRYVWGGFAYLQDMMDHGIIRAQTPKA
QPLGVFAQQMPYPCFVDDVFLRFLASSLPLYMTLAWIYSVAMIIKGIVAEREARLKETVR
IMGLRGSIYWLSWAVSSLLPLAFSALLLCLILKYGKVLQYSDPSVIFVFLLVFCLATITQ
CFFISVFFSKANLAAACGGLIYFVLYLPHLLCYAWRDVMAFQAKVGVSLLSCVAFGYGCE
NFAKFEEQGIGIHWYNINKSPEEGERYTFIVSILMMLFDAAFYWVLTWYIENVFPGQYGI
PKPWYFPFTASYWCGTASAINIDAAVLKNSTEHNEYLENPTPNMKAGVSVRNLVKIYKTG
KKLAVDGLSMDFYENQITSFLGHNGAGKTTTMSILTGMFPPTSGTALINGYDILTDMDSI
RKYLGMCPQHNVLFDNMTVEEHIYFYARLKGRSRAEVTIEIDQMIKDVGLPHKRKDLAKN
LSGGMQRKLSVAIAFVGGSKVVILDEPTAGVDPYARRGIWELLLKYKQGRTIILSTHHMD
EADILGDRIAIISHGKMRCCGSSLFLKKLFGSGYYLTLVRDGTEKMTAQRRGIIHHQTKE
EEDGPSRSSSPDDGIGSQSWDNSDPSGMTALDQIVQRHVPKAVFLESIGQEITYILPYSG
ARDGTFALLFQGLDLAMADLGLTSYGISDTTLEEIFLKVAEDTGVDAEIPTTKELLERDC
RRGSRTTKRNSIASVHKNTEPLSERSDLKERFTSKVEDLKKKASVNGKGSMVITGWELIR
RQFLALFIKRFHHARRSRKGLIAQVVLPAVFVCLSLIFSLIIPPFTEYPSLELQPWMYDL
PQTTFYSNDGPDNVTLAKVVETLVNKPGFGSRCMDGDPIPMLPCSSSGSDWFTPSVDQSV
ADIFLNGNWSMSNPSPSCQCSTPKRTIMFPDCPPGAGGLPPPQRIQNTTDTLLDLTGRNM
TDFLIKTFAQSGKKRYGGISVGGVNSQVRMSEAEVEASFRDLKELLRSSQDNLTDQILQK
SETLLKKLGTRDNLKVWFYNEAWHGMASFLSVANNAILRGNLPAGQDPSQYGISVSNHPL
NLTKEQLSFVAMATTSTDVMVSICVIFAMSFIPASFVLFLIQERVNKAKHLQFVSGVNPT
IYWLANFAWDMCNYIIPCLIVIVIFLCFQQEAYVSLANLPALVLLLILYGWAITPMMYPA
SFFFSVPSTAYVVLTCINLFIGINGSIATFVLELFDDDKVSRINDIVKNVLLIFPHFCLG
RGLIDMAKNQAMATLFSNFGEDRFQDPLSWDMVGKNLCAMSIQGVVMFATTILIQYKFFC
KPRLISGKSSSPEEEDIDVAQERKRMYEGKAQEDLLRVYDLTKVYSRKSTPAVDGLCVGV
PAAECFGLLGINGAGKTTTFKMLTGDIPVSSGEAFLNGYSIRTEMREVHQNMGYCPQFDA
LDELLTGREHLELYARLRGVPEKEVTMVAEWGIQKLGLVKYSSKSAGTYSGGNKRKLSTA
IALIGCPQVIFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSMEECEVLCTRMAI
MVNGCFKCLGSIQHLKSRFGDGYTVIVKVGGSSPALKPVEEFVQQSFVGSVLKETHHNTL
QYHFPYAQGALANIFSQFTRHQQRLGVEDYSVSQTTLDQVFVNFAKHQHGEENSQAYDNA
VDTSDEMPMKSMKTSQEAEMA
NT seq
6726 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctggcgcagttcactctgctcctgtggaagaacttcactctccgaaagaga
caaaaggtgcggctggtcgttgaagttgtatggcctctgtttctcttcgtcatcctggtg
ttagtgcggtccaccaataagcctctttataaaggccaatgccactacctaaataaagcc
atgccgtcggcaggcgtgcttccctggcttcaaggtatgacgtgtaacatcaacaatccc
tgtttgaaatatccaacgctgggggagacaccaggccaagtcaacaacttcaacagctcc
ataatttccgggatgttgatagagctgcaaaccgtcctcgtgaacagatctattctcagc
aatgcacagttgttggctgatgacctcgaccagtggggttcagtcctgtcgcagactaac
cctggagatgctcaaccactgatcctaaggagtattctcagagacaatgaaactctctct
actcatttgaaagagaatttatcgctgccatcaacggtggtccaaagcctcatgaatgcc
gagattaaattcaatccaatgatgggcatcccaaggccaggcaacctgaagagcgtcctg
tgtgaagggacagacctggaccagtatatccaatttagcagccgagctgaaaaagaggct
tttcaaaatgtcagctgctccctcgacccacagcaactgaataatgcccagcaagtactc
ctgcaaaacctggacgcgaggaaagtgctttctaaggtaccttcagctttgaatccaaat
gtaacggacacagtcacactgatggggaaaaccactcaacatgcattaccagtgattgaa
gagatggccagattgcagaactccatgatctttaaggctgctggttctttggatttccaa
aataacatgattggcagtatcaatatgctcctttgtggaaagaagtctgacatcagtttg
gcctcaccaagacggatggataacaagatgtctgtcattattacaagcaacagttccgat
gctttttgtcagaatcttgtcgacaccctggagggcacacctggtctgcgctacatttgg
agcaccttcaagcagttattgcaagggaaagtcctctacacacctgatacaccggctatc
cgcctcatcgtgaaagaggcaaatagcacattcaattccttggctatgctcaaagagctc
gcagatttgtgggatgaaatcgggccacgtatctcggattttcttcaagatagccgccaa
gtcaacacattacgggctttgttggcaaatccagtggttgctgttgtcctcgaccggagt
atcaacaacacgggatggacaagcgagctgctggccaacttcctgtacaacgggcttcca
gaggatcgtccagccggcatgccgccttacgactggcggaacgcttacaacgccacttcc
gaaatcatgaagcttctctccaaattcctcggctgtttagacctggataagtttgaggca
gcccccaccgaaagccatctggtgagcagagcacaggagcttctgaagaatggtacgttc
tgggctgccattgtctttgaaaacctccagtccaactccagccacccctctccgtatgtc
aaatacaaaatccgcatggacattgagaatgcagagcgtaccaacaaagtgaaagacaag
ttatggtctcccggggctcgagacaacccctttaacgacatgcgctatgtatggggagga
ttcgcctacctgcaggatatgatggaccatggtattatacgagcacaaacgccaaaggcc
caaccacttggtgtttttgcacagcaaatgccatacccctgcttcgtggatgacgtgttc
ctccggtttctggcaagctccctccccttatacatgactttagcctggatatactcagtg
gccatgatcattaagggcatcgtcgcagagagagaggcgaggctgaaggagaccgtgagg
atcatgggcctcagaggttccatctattggctgagctgggcagtgtccagtctgttgccg
ctggccttcagtgccctcctgctttgccttatactgaagtatggcaaagtgctgcaatac
agcgacccctcggtaatcttcgtcttcctgctggtgttctgcctggccaccatcactcag
tgcttcttcattagcgtcttcttctctaaggccaatttagcagcggcgtgcggtggcctc
atctactttgtcctctacctgccacacctcctttgctatgcctggagggacgtcatggct
tttcaggccaaggttggagtgagtttgttgtcatgtgtggcctttggctatggctgtgag
aactttgccaagttcgaggagcaaggcatcggcattcactggtacaacatcaacaagagt
ccggaagagggagaacgctacaccttcatcgtgtccatcctcatgatgctctttgatgct
gccttctactgggtgctcacctggtacattgagaatgtctttccaggccaatatggaatc
cccaagccatggtacttcccattcactgcatcctactggtgtgggacagcttcagcgatt
aatattgacgccgccgtgctgaagaactccactgaacataatgagtacctggagaatcct
acacccaatatgaaagcaggggtctcagtccgcaatctcgttaaaatatacaagaccgga
aagaagctcgctgtggacggactgagtatggacttctatgagaatcagatcacatctttt
cttggccacaatggagccgggaaaacgaccacaatgtcaattctgacaggaatgttccca
cctacatcaggaacagcgctcatcaacggatatgacatcctcactgacatggacagcatc
cgaaagtacttgggaatgtgcccacagcacaatgtcttattcgataatatgacagtggag
gagcatatctacttctacgcccggttgaaaggacgcagccgcgccgaggtgacaattgag
atagaccagatgattaaggatgtcggtttgccacataagcggaaggatctggcgaagaac
ttgtcaggtgggatgcagaggaagctgtccgtggctatagcatttgtcggcggctcaaaa
gtcgtcatcttagatgaacccacagcaggagtggacccctacgcccgcagaggcatctgg
gaactgctgttaaaatacaaacaaggtcgcaccatcatattgtctacacaccacatggat
gaggcagacatcttaggcgatcgcattgccatcatctcgcatggcaagatgcgttgctgt
ggctcctccctcttcctaaagaaactttttggcagtggctactacctcactctggtccga
gatgggactgagaagatgacagctcagcgtcgtggtatcatacaccatcagactaaagag
gaggaagacggtccttcgaggagcagcagcccggatgatggcatcggcagccagagctgg
gataactctgatccctcagggatgacagctctggatcaaattgtgcagcgccatgtccct
aaagcggtcttcttggagagcatcggtcaagagataacttacatactgccttacagcgga
gccagagatgggacctttgctctgctgttccaagggcttgacctggccatggctgacctt
ggcctgaccagctacggcatctctgacaccacgctggaggagatatttcttaaagtggca
gaagatactggagtggatgcagaaataccaacaacaaaggagctgttggagagagactgc
agaagaggctcccgcacaaccaagcggaacagcatcgccagcgtccacaagaacacagag
ccgctctctgaaaggagtgatttaaaggaaaggttcacaagtaaagtggaagacttaaag
aagaaagccagtgtcaatgggaagggatccatggtcatcaccggatgggagctgatcagg
aggcagttcctggcgctttttatcaagcgcttccaccacgcccgaaggagccgcaaggga
ctcattgcccaggttgtcctgcctgctgtttttgtgtgcctgtctctgatcttctcgctc
atcatcccaccgttcactgaatatccgagtctggagctgcaaccctggatgtatgatctg
cctcaaaccaccttttacagcaatgatgggccagataatgtgacgttggctaaggtggtg
gaaaccttggtgaacaagcctggctttggcagccgctgcatggatggagacccaataccg
atgctaccttgttcttccagtggctctgattggttcactccatccgtggatcagtctgtc
gctgacatcttcctcaatgggaactggagcatgtctaacccctccccctcctgtcagtgc
agcacacctaaacggacaatcatgtttcctgactgtccacctggagcaggagggctccct
ccacctcagaggatccagaacacaacagacacattgttggatctaactggacggaacatg
acggacttcttgatcaagacttttgcacagtcgggtaaaaaaaggtacggaggcatctct
gtcggaggcgtcaactcccaagtccgtatgagcgaggccgaagtggaagcttcattcagg
gatctaaaagaactattacgctcctctcaggataatttgactgaccagatcctccaaaag
tctgagacgctgctgaagaaactgggaaccagggacaacctcaaggtgtggttctacaac
gaggcatggcacggcatggcgtccttcctcagcgtggcaaacaacgccatcctgagggga
aatctgccggcaggacaggatcccagccagtacggcatctctgtgtccaatcaccccctc
aacctcaccaaggagcagctctcctttgtagctatggccacaacctctactgacgtgatg
gtgtccatctgcgttatctttgccatgtccttcatccctgccagctttgtcctcttcctc
atccaagagagggtgaacaaagccaaacatctgcaatttgtcagtggagtaaacccaact
atctattggttggccaattttgcctgggacatgtgtaactacatcatcccatgcttgatt
gtgatcgtgatcttcctctgcttccaacaagaagcctacgtttcacttgctaacctgcct
gctttggttctgctgcttattttgtatgggtgggccatcacccccatgatgtaccccgcc
tccttcttcttcagcgtgcccagcacagcctacgtggtgttgacatgcatcaacctcttc
atcggtattaacggcagcatcgcaacctttgttttggagctctttgatgatgacaaggtc
tcccgcatcaatgacatcgtgaaaaatgtgctgctcatattcccacatttctgtctgggc
agaggacttattgacatggccaagaaccaggcgatggccaccctcttcagcaattttggg
gaagaccgtttccaagacccactcagctgggacatggtgggaaagaacctttgtgcgatg
tccatccagggagttgtcatgtttgccaccacaatcctcatccagtataagtttttctgc
aaaccaagactgatttcaggaaaatcctcatctccagaggaagaggatattgatgttgct
caggaacgcaaacgcatgtatgaaggcaaggcccaggaagaccttctgagggtctacgac
ctcaccaaggtatactctcggaagagcacccctgctgtggacgggctatgtgtgggagta
cctgccgcagagtgtttcggcttgctgggaatcaacggggctgggaaaaccaccacgttc
aagatgctgacgggagacatcccagtctccagtggagaggccttcctaaatggatacagc
atacgaacagaaatgagggaggtgcaccagaacatgggctattgtccccagtttgatgcc
cttgatgaactgctgactggacgagagcatctggagctttacgccagattacgaggggta
ccagaaaaagaggtcaccatggtggccgagtggggcatccagaaattggggctggtcaaa
tattccagcaagtcggcaggaacctacagcggtgggaacaaacgcaaactttcgacagcg
atagccctgattggttgtccgcaagtgattttcctggatgaaccgacaactgggatggac
cccaaagcccggcgcttcctgtgggactgcatcctcagcgtcatcaaagagggacgctca
gtcatcctcacatcacacagtatggaggagtgtgaagtcctgtgcacacgcatggccatc
atggtcaatggttgcttcaagtgtctcggaagcatccagcatctcaagagcagatttggt
gacggctacacggtgattgtgaaggtcggtggctcttctcctgcattgaagccggtagag
gagttcgtccagcagtccttcgtgggcagcgtcctgaaggagacgcatcacaacactctg
cagtatcacttcccgtacgcacagggggctttggccaacatcttcagccagttcacccgg
catcagcagaggctgggtgtggaggactactccgtgtcccagaccacgctcgatcaggtc
tttgttaactttgcgaagcaccagcacggggaggagaactctcaggcctatgacaacgca
gtggacacttcagatgagatgccaatgaagtctatgaagacctcccaagaagcagagatg
gcataa
DBGET
integrated database retrieval system
