Pseudoliparis swirei (Mariana hadal snailfish): 130211972
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Entry
130211972 CDS
T09868
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04512
ECM-receptor interaction
pswi04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130211972 (frem1a)
04518 Integrin signaling
130211972 (frem1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
pswi04091
]
130211972 (frem1a)
Lectins [BR:
pswi04091
]
C-Type lectins
Lecticans
130211972 (frem1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Big_9
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
130211972
NCBI-ProteinID:
XP_056298988
LinkDB
All DBs
Position
21:complement(16971181..17007371)
Genome browser
AA seq
2165 aa
AA seq
DB search
MGSRGQTLAWTVLPVLLLGMTCPSSHGSLVKVNKGVKVKRGQSAYLQDGDLQFHIPRQKD
ACKVEVVLNEPMTQRVGKVLPQVFDCHYLANEVKYVHNGCPLLKEDSVKLRLYRFTETET
HMEVFSLHVDIMVPECSIIKLGPKSLQVPEFYSFSDAVDGNVVSFHYEQRSSLECSIHLS
GHDIHLPAHGQLVTGEPEKATIRGDEPESFIPLRQQLDNKARAMCKSEDCLKGLKLVKLT
KIPCDDFLLMGLRYQHIDPPSPDVDYIAIRLELKDTRSGSTYQSEQAWIPVQIVGALSNQ
PPKPSFMSMFILEVDQFILTPLSTATLDTEDEETPKQLLVFNITKAPMDGFITHLSDHTR
PISSFTWLDLNDMLIGYQPPNSSNTHRRNYEIEFEVHDFFFEKSPSMTVHMSVRNAETNA
PRVSWNMGLSLLEGQSRPIMWEQLQIVDNDNLDAVRLITVDGLQHGRLTVRGGKGFMFTV
KDIKAGVVRYHHDDSDSTKDFIIFRITDGLHQTRHKFPIKILPKDDSPPMLITNMLLEVS
EGQMALLRGSTLQASDMDSSDDYILFNITRPPQAGELMKMPPSGLAGYPVSHFLQRDLSQ
SMVYYRHLGSEVFDDFFEVVLSDFHDPPNLSEPQVVVVHIEPVPDQPPKEVPGSSRYLVV
KETEVVHITQQQLHFVDKESPDSELTYTVTTTPFYAGPQSSPDAGRLFLVDSIPKFTKDS
DAPVLRLFTQHAVNFMKVAYMPPVMDIGPYPQYIQFVLSVTNLLGKTVTGICFNITVVPV
DNQPPQVVTNPLTVDEGGQCWLGPEHLVLSDVDSVEEALQVALQREPQHGALHLSGGPLK
PDQAFTVRDLKGLKVRYTHDSSETAEDHIDLTATDGHNSVSFILQVKVVPVNDEVPVMVA
GLKPVLSCAEGQEVVITAEYITATDADSDNSSLAFLIARQPHHGVVLRDAVVVDRFIQAD
VTARLITYKHTGLEIGLTPRHDTITFVISDGEEKPTKTREVTHSLPVYDLQITVFPVDSQ
PPSLTAGDIFTVDEGGSAPITTSHLKASDVDTALDRLVVSLISSPRFGYIENVLPSPGFE
KSNTGISIASFPYKDIIAGHVNYVQSRHQRMEPTADQFMFCVSDGTHSSAHIPFYIIINP
TNDESPQFVARNITVREGGAKQLDSSILHAGDLDVPEDRLLFSVVRAPQHGIIMSHHSET
SPQTRPQIPVVDFTMTDLSNGMDLMYMHDDSENTEDSFIIQVSDGRHQLQRQVTVKVLPV
NDEKPQVIRNNGLQVDLGEARLISSIALFAQDGDTPSAEVMYTFSSVPTQGLLQLKEGQD
WRTLTAGTNCNQEMVNMNLLRYVNTGAKTQDFFVFYLSDGDNQSPRQHFHISVKDLEKGN
IAVFVKPANVNRGDRVVLTTDVLLATDGTERPEELLYIVTDPPAHGHVEYIKHPGVAIAT
FSQMDVAANLVAYVHDNRATAPTETFRFVVSNGKTSRNGSFVVAVEMVDRILPSLSSNRG
LSVPQGSSMILGADCLVLSDPDTPPAALTFVLLQPPQYGELLVGGATLTSGSNFTQRNIQ
KMEVTYHHDGGAAEIDRFAFTASDSTRRGFLLDGRLHTEPVFFTIQIKPLDKSCPEVVRL
LPLWKAEPLGDGRHGISVSSRELKAQDRHSREEELIFCIVRQPYFGYLENTTTGGFVAQR
FSQTELNKRTIAYIINPDGEALSDSLEFTVSDPLGNTGPPHILEFSWSSVELSQPQYSVC
EDQGSVSLDLFRRGNLAESSYVTVKVKEVTATAGKDFRTSPSSLIQFDPGVSKRSWQSEI
IQDHLEETVEVFEVLLVSPEGAVIGSISKAQVTIRDSGSGQLHQDQEAPLLVGKEVRSDP
YPQHGSIELEKLPLGTDSVIWTRGDSISRPGPLPTKKKLQVMGNPKSIAPSSVLHNGTDL
VFTYHGIMHMQVEDNTSPSRKGRKANIRVVSRRAQTQQVVPAVLTESKSEPHRQISKPQR
TALATEHAKADDIIAKPCVPELMGLLHFNQTSNQLFHCNGVSWKPWAPTHQMVSAQTCGQ
GWTFHGGYCYSLSSEPKVTWSTANRACRERYKGSLASVLSKANMDWLWDFSGRKPFWIGL
NDRDGRGRWEWAGSEPVGYTNWRKTPPRSKGKGNKKCVLVWRRAKWQIRDCKTSRAHRFV
CSIKT
NT seq
6498 nt
NT seq
+upstream
nt +downstream
nt
atggggtcacggggtcaaacgctggcctggaccgtgcttcctgtgctgctgctgggaatg
acctgtccgtcatcacacggttccctcgtgaaagtcaataagggcgtaaaggtgaagcgg
ggtcagtcggcctacctccaggacggcgacctgcagttccatatcccccgtcagaaggac
gcgtgcaaggtggaggtggtgttaaatgagcccatgactcaacgagtgggaaaggtcctg
cctcaggtgtttgattgccactatctggctaatgaggtgaagtacgtccataacggatgt
cccttgttgaaggaggactccgtgaagcttcgactgtacaggttcacagagacagagaca
cacatggaggtgttttctctccacgtggacattatggtccctgaatgcagcatcataaag
ctggggcccaaatccctgcaggttcctgaattctacagcttctctgacgctgtggacggc
aatgtggtgtccttccattatgagcagcggtccagtctggagtgtagcattcatctgagt
ggccatgacatccacctgccggcccacggccaacttgtcaccggagaaccagagaaggcc
acgataagaggggacgagccagagagcttcatccccctacgccagcagctagataataaa
gccagagcaatgtgtaaatctgaagactgcctgaagggtctgaagcttgtgaagctcacc
aagattccctgtgatgacttcctgttgatggggctgaggtaccagcacatagaccctccg
tctccagacgtagattacatcgccatcagactggagctcaaggacacccgcagtggcagc
acatatcagtctgaacaggcctggattcctgtgcaaatcgtcggggcgttgtccaaccag
ccgcccaaaccatccttcatgtccatgttcatcctggaagtggaccagttcatcctcact
ccactctccactgccacactagacactgaagacgaagaaactcccaaacagctgttggtg
ttcaacatcaccaaagcgcccatggatggcttcatcacccatctgtccgatcacactcgg
ccaatctcctctttcacatggctggacctcaacgacatgctcattgggtaccaacctccg
aactcctccaacacccaccgcaggaattacgagatcgaatttgaggttcatgatttcttc
tttgagaagagcccatcgatgactgtccatatgtctgtaaggaacgcagagaccaatgca
ccccgagtgtcttggaacatgggcctcagtctattggagggtcagtctcggccaataatg
tgggagcagctccagattgtggacaacgacaacctggacgctgtccgcctcatcacggtg
gacggcctgcagcacggacggctcactgtcagagggggaaagggcttcatgttcaccgtc
aaggacattaaagcgggcgtggttcgctatcaccatgacgacagcgactccaccaaagac
ttcatcatcttccgcatcaccgacggcctccaccagacccggcacaagttccccatcaag
atcctgccgaaggacgacagccccccgatgctcatcaccaacatgctgctggaggtgtcg
gagggccagatggccttactgagaggctccaccctccaggcttcagacatggactccagc
gacgactacatcctctttaacatcacccgccccccacaggcaggggagcttatgaagatg
ccgccatcaggactcgcaggttatcccgtcagccacttcctgcagagggacctgtctcag
tccatggtttactatcgacacctagggagcgaggtgtttgacgacttctttgaggtggtg
ctgtccgatttccatgacccccccaacctgtcagagcctcaagtggtggtggtgcacata
gagccagttccagaccaaccacccaaggaggttcctggttccagtcggtatctcgtggtc
aaagaaacagaagtggtccatataacccagcaacagcttcactttgtcgacaaggagtct
ccagacagtgagctcacctatacggttactactacacctttctacgctggtcctcaaagc
agtccagatgctgggaggttgttcttagtggacagcatacccaagttcaccaaagactcc
gatgcaccggtgctgaggctcttcacacagcatgcagtgaacttcatgaaggtagcctac
atgcctccagtcatggacatcggcccttacccccagtacatccagtttgtgctctccgtc
accaacctgctgggaaagaccgtcactgggatctgcttcaacatcactgtggtgccagtg
gacaaccagccgccacaggttgttaccaaccctctgactgtagatgaaggagggcagtgc
tggctgggccctgaacacttggttctgtcggacgtggactctgtggaagaagccctgcag
gtggcgctgcagagggaaccgcagcatggagctctgcatctcagcggcggcccgctgaaa
ccggaccaggctttcactgtgcgagacctaaaaggccttaaagttaggtacactcacgac
agctcagaaaccgccgaggaccacattgacctcacagcgacagacggacacaattcagtc
agcttcatcctccaagtgaaggtggtgcccgtcaatgacgaggtcccagtgatggtggct
ggtctgaagccggtcctcagctgtgcggagggacaggaagtcgtcatcacggctgagtac
atcaccgccaccgacgccgacagcgacaacagcagcctggccttcctcatcgcccggcag
ccgcaccacggcgtggttctccgggacgccgtcgtggtcgatcgcttcatccaggcagac
gtcaccgccaggctcatcacctacaaacacacagggctggagatcggactcactcctcgc
catgacaccatcacctttgtgatatccgacggagaagaaaagcccaccaagaccagagag
gtgactcacagcctgcctgtgtacgacctccagatcactgtgttcccagtggacagccag
cccccttctctcacagcaggagacatctttacagtggatgaaggtggctccgcccccata
accacatctcatctgaaggcctccgacgtggacacggctctggacagactggtggtcagt
ctcatttcatcaccccgcttcggctacatagaaaatgttctgcccagtcctggctttgaa
aaaagcaacacgggcataagcatagcttcctttccatacaaagacatcattgcgggtcat
gtgaactacgtccagtccagacaccagaggatggagcccacagcggaccagttcatgttc
tgtgtgtcggatggcacgcacagctccgcccacatccccttctacatcatcatcaacccg
accaacgacgagagcccgcagtttgtggctcggaacatcacagtacgagagggaggagcc
aagcagctggactcgtccattttacatgcgggggatctggatgtgcccgaggaccgcctg
ctcttcagtgtggtccgagccccgcagcacggcatcataatgtcccaccacagtgagacc
agtcctcagaccaggcctcagatccctgtggtggacttcacaatgaccgatctgtcaaat
ggtatggatctgatgtacatgcacgatgactcagagaacacggaggacagtttcatcatt
caggtgagcgacggcaggcaccaactccaaagacaggtgacggttaaagtgctgccagtg
aacgacgagaagccgcaagtcatcaggaacaacggactgcaggtggacttgggagaagcc
cggctgatttctagcattgccctgtttgcacaggatggcgacactccttctgcagaggtc
atgtacacgttcagcagtgttcccacccaaggactactccagctgaaggaaggtcaggac
tggaggacattgacagcagggacgaactgcaaccaggagatggtgaacatgaacctcctg
cgctacgtgaacacgggggctaaaacgcaggacttctttgtcttctatttgtcggatgga
gacaatcaatcgccccgccagcacttccacatctctgtcaaagatctggaaaaaggaaac
attgctgtgttcgtgaagccggccaacgtcaaccgtggagaccgcgtggttctcaccacg
gacgtgctgctggccacagacggcaccgagaggccagaggagcttctgtacatcgtcact
gaccctccggctcacggacacgtggagtacatcaagcaccctggagtggccatcgccacc
ttcagccagatggatgtagcggccaacctcgtggcttacgtgcacgacaatcgagccacc
gcacccacggaaacctttcggtttgttgtgagtaacggtaaaaccagccgcaacgggagc
tttgtggtcgccgtggagatggtggaccgcatcctgccgtctctatcctccaacagaggc
ctctcggttccccaaggctcctccatgatcctcggtgctgactgtctggtcctgtctgac
cccgacacgccgccggccgccctgacctttgtcctgctccagcctccacaatacggagaa
ttgcttgtgggaggagctacactgacttcgggctccaacttcacccagagaaacatccag
aagatggaggtaacttaccaccatgacgggggggcggcggagatcgaccgctttgccttt
actgcctctgacagcaccagacggggtttcctgctggacggacggctgcacacggaacct
gtgttcttcactatccagatcaagcctctggataagtcttgccctgaggtggtcaggttg
cttcctctctggaaggcggagcctctcggggacggacgacacggcatctctgtgtcctct
cgagagctgaaggcccaggaccgacacagcagagaggaggagctcatcttctgcattgtt
cgacagccctacttcggctacctggaaaacacgaccacaggcggttttgtagcacagcgc
ttctctcagacggagctgaataagagaaccatcgcctacatcatcaacccagacggggag
gccctctcagacagcctggagttcaccgtgtcggatcccttggggaacacggggccccct
cacatactggagttcagctggtccagcgtggagctgtctcagccccagtactctgtgtgt
gaggaccagggatccgtctcactggacctcttccgtagaggaaacctggccgagtcctca
tacgtcactgtcaaggtgaaggaggtgacggcaacagctggaaaagacttccgcacaagc
ccttcttccctcatccagtttgatccaggcgtgtccaagaggagctggcagagcgagatc
attcaggatcacctggaggagaccgtggaggtgttcgaagtgctgctggtctcccctgaa
ggcgccgtgatcggcagcatcagcaaggctcaagtcaccatcagggactcggggagcggt
cagctgcaccaggatcaggaggctcctcttcttgtaggaaaagaggttcggtcagacccg
tacccccaacatggatccattgagctggagaagctgccccttggcaccgactcagtgatc
tggactcgtggagacagcatctccaggcccggaccactgcccacaaaaaagaaacttcaa
gttatgggcaacccaaagtctattgcaccttcatcggttcttcacaacgggaccgacttg
gttttcacgtatcatggcatcatgcacatgcaagtagaggacaacacctccccatcgagg
aagggcaggaaggcaaacatccgtgtggttagcaggagagcacagacccagcaggtggtg
ccagctgttctcactgagtcaaagtcagagcctcacagacagatctcaaaaccacaaaga
accgcactggctacagaacatgctaaagctgatgacatcatagcgaagccgtgtgtgcca
gagctgatgggactcctgcatttcaaccagacaagcaatcagctcttccactgcaatgga
gtctcctggaaaccctgggcaccaacccatcagatggtgagtgctcagacgtgcggtcaa
ggctggacctttcatggtggctactgctactccctcagcagcgagcccaaagtcacatgg
agcacagctaaccgggcctgcagagagagatacaaaggctctttagcaagcgttctctct
aaagccaacatggactggctgtgggacttcagcgggaggaaaccattttggataggcctg
aatgaccgggacggccgaggacgctgggaatgggcgggcagcgagccggtcggctacacc
aactggaggaagacgcctcctcggtccaaagggaaggggaacaagaagtgcgtcctggtc
tggagaagagcaaagtggcaaatcagggactgcaagacgagtcgagctcatcgcttcgtg
tgctcaataaaaacgtga
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