Pseudoliparis swirei (Mariana hadal snailfish): 130211992
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Entry
130211992 CDS
T09868
Name
(RefSeq) ras-related protein Rab-39B isoform X1
KO
K07925
Ras-related protein Rab-39B
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130211992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130211992
09183 Protein families: signaling and cellular processes
04031 GTP-binding proteins [BR:
pswi04031
]
130211992
Membrane trafficking [BR:
pswi04131
]
Autophagy
Other autophagy associated proteins
Rab GTPases
130211992
GTP-binding proteins [BR:
pswi04031
]
Small (monomeric) G-proteins
Rab Family
Rab39/42 [OT]
130211992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ras
Roc
Arf
MMR_HSR1
RsgA_GTPase
Gtr1_RagA
ATP-grasp_5
AAA_22
VGCC_beta4Aa_N
Motif
Other DBs
NCBI-GeneID:
130211992
NCBI-ProteinID:
XP_056299028
LinkDB
All DBs
Position
21:3462545..3469833
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AA seq
255 aa
AA seq
DB search
MNALSPSLSLSLSLSLLLSHARAFARSRPNRQTRRQTRARRVMEAIWLYQFRLIVIGDST
VGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAY
YRNSVGGLLLFDITNRRSFQNVHDWLEEARSHVQPHSIVFLLVGHKCDLEAQRQVTRQEA
EKLAGAYGMRYVETSARDATNVEHAFTELTRDIFALVRSGDITIQEGWEGVKSGFVPNVV
HSSEEVTKSDRRCLC
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctctctctccctctctctctctctccctctccctctctctcttgctctctcac
gcacgcgcattcgcccgctcacgccccaacaggcagacacgcaggcagactcgcgcgcgc
cgagtcatggaggcgatctggctgtaccagttccggctgatcgtcatcggggactccacg
gtgggcaagtcgtgcctgatccgccgcttcacggagggccgcttcgcccaggtgtccgac
cccacggtgggcgtggacttcttctcccgcctggtggagatcgagccgggcaagaggatc
aagctgcagatctgggacaccgcggggcaggagcgcttcaggtccatcaccagggcttac
taccgcaactccgtgggcggcctcctcctcttcgacatcaccaaccgccgctccttccag
aacgtccacgactggctggaggaggcccgcagccacgtgcagccgcacagcatcgtcttc
ctgctggtgggccacaagtgtgacctggaggctcagcggcaggtgacccgccaggaagcg
gagaagctggcgggggcgtacgggatgcgctacgtggagacgtcggcccgcgacgccacc
aacgtggagcacgccttcaccgagctgaccagggacatcttcgccctggtgcggtccgga
gacatcaccatccaggagggctgggagggcgtgaagagcggcttcgtccccaacgtcgtt
cactcttcggaggaagtgaccaagagcgaccgccgctgtctgtgttga
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integrated database retrieval system
