Pseudoliparis swirei (Mariana hadal snailfish): 130212059
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Entry
130212059 CDS
T09868
Symbol
igsf5a
Name
(RefSeq) immunoglobulin superfamily member 5
KO
K06786
junctional adhesion molecule 4
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04517
IgSF CAM signaling
pswi04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
130212059 (igsf5a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
130212059 (igsf5a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130212059 (igsf5a)
Cell adhesion molecules [BR:
pswi04515
]
Immunoglobulin superfamily
CTX family
130212059 (igsf5a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
C2-set_2
C2-set_3
I-set
C1-set
Ig_3
TED6
EphA2_TM
SCY_4732_
Orthoreo_P10
Ig_2
MpPF26
Tweety
Epigen_C
Motif
Other DBs
NCBI-GeneID:
130212059
NCBI-ProteinID:
XP_056299159
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All DBs
Position
3:15148657..15157577
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AA seq
359 aa
AA seq
DB search
MTVLRISRPDLFLIGFLLCATGVVSGQFQLEPLNSTVLQGSDAQFNASVQGKWNIMTWEV
RGFLVLTFPFTGNVISSSKQFSANFCSSVDTSCVAFTIHNVTRGGQAGPVVCTIQGDYGS
KTAQLYVQESGTVNVKGGNVTVVQHQQVEFQCVTSAWFPTATVSWTRNGQAVNNSLYNTT
SMADGETFNASSVLRFQAISNATVECRATVLSLASPESSSVFLVVVPKPPDWTVLIAVVV
SIGGFALLVLLIIGIIFCCKRREEKQANDRDEMRAKTHSQISGGSAAGNRRGQENAGYVP
EDQASVAPSKITDSGFSQASGAEVHEVAVNTNQTGNVYSGAHITAGESGVRKHRHLTIV
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgactgttctccggatatcaaggcccgacctcttcctcatcgggttcttactgtgtgca
actggagtggtgtcggggcagttccagctcgagccgctgaattcaacggtcctccaaggc
tctgatgcgcaattcaatgccagtgtgcaaggaaaatggaatatcatgacctgggaagtc
agagggttcctggtcctcactttccccttcaccgggaacgtaatctcgtcctcaaagcag
ttctccgccaacttctgctccagtgttgacaccagttgtgtggcgttcaccatccataac
gtcacccgcggtggtcaggccggcccggtcgtttgcacgatacagggggattatggatcg
aagacggcacagctttacgtccaagagagcggtacggtcaacgtcaaggggggaaacgtg
acggtggtgcagcaccagcaggtggagttccagtgtgtaacatccgcttggttccccacc
gctactgtcagctggacccgaaacggccaagctgtgaacaatagcctgtacaacaccacc
agcatggccgatggggagaccttcaatgcctccagcgtcctgaggttccaggccatcagc
aacgccacggtggagtgtcgggcgactgtgctgtcactcgcaagtccggaatccagctct
gtcttcctggtggttgttcccaagcctcctgactggaccgtgctgatcgctgtggtcgtg
tccatcggaggtttcgctctgctggttttgctcatcatcggtattatcttctgctgcaag
cgcagggaagaaaagcaagccaacgaccgggatgaaatgagagcgaagacgcacagccag
ataagcggtggcagtgcagccggaaacagacggggtcaagagaacgcaggatacgtgccg
gaggatcaagccagtgtcgctcccagcaaaattactgacagcggcttttctcaagcaagc
ggcgctgaagttcatgaggtggccgtgaacactaaccagacaggaaatgtctacagtggt
gcccacatcactgcgggtgaatccggcgtcaggaaacacagacatctcaccatcgtgtga
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