Pseudoliparis swirei (Mariana hadal snailfish): 130212074
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Entry
130212074 CDS
T09868
Symbol
pcdh7b
Name
(RefSeq) protocadherin-7b isoform X1
KO
K16498
protocadherin delta 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
130212074 (pcdh7b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pswi01009
]
130212074 (pcdh7b)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130212074 (pcdh7b)
Protein phosphatases and associated proteins [BR:
pswi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130212074 (pcdh7b)
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Protocadherins
130212074 (pcdh7b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Mid2
TMEM154
Adeno_E3_CR2
DUF1180
Motif
Other DBs
NCBI-GeneID:
130212074
NCBI-ProteinID:
XP_056299182
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All DBs
Position
21:6279202..6380526
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AA seq
1270 aa
AA seq
DB search
MRTTGAVDYLFYSMLILQLVHQPAAKQMLRYRLAEEGPADVRVGNVASDLGIVAGSGEVT
FTLESGSDFFKIDNITGELTTNERRIDREKLQQCQMIFDENECFIDFEVSVIGPAQSWVD
LFEGKVIILDINDNTPIFPSPVLTLSVEENRPIGTLYLLPTATDRDFGRNGIERYELIQD
NGENSRRSTGDSFSGKRRFDEGASRSSVFELQVADTTDGEKQPQLIIKGALDRELRDSYE
LMLRVRDGGDPARSSQAILRVMITDVNDNNPRFEKGVYEADLPENSSPGAPILQLKAADA
DVGVNGQIEYVFGAATESVRRLLRLDESTGWLSVLHRIDREEVSQLRFTVMARDRGQPPK
MDKATVVLNIKDENDNVPTIEIRKIGRIFLKDGIANVAEDVVVDTPIALVQVSDRDQGEN
GIVTCTVVGDVPFQLKPASEMEGEQNKKKYFLHTSATLDYEVTQEYNVVIVAVDSGSPSL
ASNNSVIVKVGDTNDNPPIFSRNVVEVSFPENNAPGERVTTVVAVDADSGKNAEIAYSLD
SSVNGIFSIDADSGDIRVNTILDREQTGRYEFKVIAKDKGMNTLQGSATVVVLVADKNDN
EPKFMQDVFTFYVKENLEPNSPVGMVTVIDADKGQNAEMSLFIEEEAEIFSIENDTGTIF
STLSFDREQKTTYTFRVKAVDGGDPPRSATATVSLLIMDENDNAPTVTFPMNSSYTLLPP
SSNVRTVVRTVIATDSDTGIHADLNYSIVGGNPFKLFEIDGGTGVISLVAKLEQKHFGLH
RLVVQVTDRGLPSQSTTTLVHVYVNETLSNSTVVDAQVAKSLSTSLNTNIAGDPNYDLSK
QRLSIVIGVVSGIMTVILIILVVVMARYCRPKNKNGYEAGKKDHEDFFTPQQHDKSKKPK
KDKKKQKSKQPLYSSIVTVEASKPNGQRYDGVNEKLSDSPGMGRYRSVNGGPGSPDLARH
YKSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGTGDNVSLGSDHCSEYSSQTINKY
NKQPFRRVTFSVVSQPQDPHQQGSLQSCYDSGLDESETPSSKSSSGPRLGALPLPEDSYE
RTTPDGSVGEAEHMENDSRPLPDVAMTGKCTRECDEYGHSDSCWMPVRTSPERRTSKSTT
TPQQPKLSTFTSGSGSGSSSSSGSSGSSSGGSSSGAEPGSQETLAMAAVANGDPAAAAAA
AHMVGDRNRNLLNKKMASSSSYEAFGSPSYGSPGHGEETLHHPTEEIPLAPTGEYKPASC
GTLTRREVYL
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgaggactactggtgcagtggactatttgttctatagcatgctcatcctgcagcttgtg
catcagcccgctgccaagcaaatgctccggtaccgtttggctgaggagggacctgccgat
gtcagagtagggaacgtagccagcgacctgggcatcgttgccgggtccggcgaggtgaca
ttcacactagaatcaggctccgattttttcaaaatagacaacataacaggtgagctcacc
accaatgagagacgcatagaccgtgaaaaattacagcagtgccaaatgatatttgatgaa
aatgagtgctttatagattttgaagtgtcagtgattggaccagctcagagctgggtcgac
ctctttgagggaaaagtcatcatattagacataaacgataacaccccaatcttcccttcc
cctgtcctgacactgtctgtggaggaaaacagacccattggaactctttatctgctgccc
acagccacagatagagattttgggaggaatggaatagagcgatatgagcttatccaggac
aatggggagaactcaaggcgctctactggggattcattctccgggaaaaggagatttgat
gaaggcgcgagcaggagcagcgtctttgaactgcaagttgctgacactacggatggagag
aagcagcctcaactcatcattaaaggggcccttgatagggaactgagagactcctatgag
ctcatgctgcgcgttcgagacggaggagatcccgctcgctcctctcaagccatcctcagg
gtgatgatcaccgatgtgaatgacaacaaccctcggtttgagaagggtgtgtacgaagct
gacctcccagaaaacagctcccccggtgcccccatactgcagctcaaagcggccgatgcg
gacgtgggggttaacggtcaaatagagtacgtgttcggggcagccacagagtcagtgagg
cggctgctgaggctggatgagagcacagggtggctgagtgtgctgcaccgcattgaccgt
gaagaagtgagccaactgaggttcaccgtaatggcccgtgacagaggccagcccccgaaa
atggacaaggccaccgtggtgttgaacatcaaggatgagaacgacaacgttcccacgata
gagatacggaaaatcggacgcattttcttaaaagatggcatcgccaacgtggccgaggac
gtggtggtggacacacccatcgccttggtgcaggtgtcggaccgcgaccagggggagaac
ggtatcgtgacgtgcaccgtggtcggggatgttccctttcagctcaaaccagccagtgag
atggaaggcgagcagaataaaaagaagtatttcctccacacgtccgccacgctggactac
gaagtcacacaggaatacaacgtggtcatagtggctgtggactctgggagcccgagtctg
gcaagtaataactctgttatcgtcaaagtgggcgacactaacgacaaccctcctatcttc
agccggaatgtagtagaggtgtcgtttccggaaaacaatgcccctggcgagagggtgaca
acagtggtcgccgttgacgcagatagtgggaagaatgctgaaatagcctattccctggac
tcctcggtaaatgggattttctctatcgatgcagacagtggagacatcagagtcaacacc
atcctggatagagagcaaacggggcgctacgaattcaaagtgatagccaaagataaaggc
atgaacactctacagggctccgcgaccgtggtcgtccttgtggcggacaagaacgacaac
gagccaaagttcatgcaggacgtgttcaccttctacgtcaaagagaacctcgagcccaac
agcccagttggcatggtcacggtcatcgacgcggataagggccagaatgcggaaatgagc
cttttcattgaagaagaggcggaaatattttccatcgagaatgacaccgggactattttc
tccaccctgtcgtttgaccgggagcagaaaaccacgtacaccttccgcgtcaaggccgtg
gacggcggcgatcctccgagatcggccaccgccacggtctcgctcttgatcatggacgag
aacgacaacgcgccgactgtcacgttcccgatgaacagctcctacaccctcctccccccc
tccagcaacgtcagaacggtcgtcaggaccgtcatcgccaccgattccgacaccggcatc
cacgccgacttgaactacagcatcgtcggcggcaaccccttcaagctgttcgagatcgac
gggggcaccggggtcatttcgctggtggcgaagctggagcagaagcacttcggcctccac
cggctggtggtgcaggtgaccgacaggggcctgccttcgcagagcaccaccaccctggtt
cacgtgtacgtcaacgagacgctctccaactccacggtcgtggacgcccaggtggcgaag
agcctgagcacgtccctcaacaccaacatcgccggcgaccccaactacgacctcagcaaa
cagcggctgagcatcgtcatcggagtcgtctcgggcatcatgacggtcatcctcatcatc
ctggtggtcgtcatggcccgctactgccgccccaagaacaagaacggctacgaggccggc
aagaaggaccacgaggacttcttcacgccgcagcagcacgacaagtccaagaagcccaag
aaggacaagaagaagcagaagtccaaacagcccctctacagcagcatcgtcaccgtggag
gcctccaaacccaacgggcagcgctacgacggcgtcaacgagaagctgtcggacagcccc
ggcatgggccgctaccgctcggtcaacggcgggccggggagccccgatctggcccggcac
tacaagtccagttcgccgctcccgaccgtccagcttcacccgcagtcgccgacggcgggg
aaaaagcaccaggcggttcaggacctgccccccgccaacaccttcgttggcaccggagat
aacgtttccctcggatctgaccactgctccgaatacagcagtcagaccatcaacaagtac
aacaaacagccgtttcgccgagtgaccttctcggtggtgagccagccccaggaccctcac
cagcagggatcgctgcagagctgctacgacagcggcctggacgagtcggagacgcccagc
agcaagagttcgtcgggcccccggctgggcgcacttcccctgcccgaagacagctacgag
aggacaacgccggatggcagtgtcggtgaggcagagcacatggaaaatgactctcggccc
ttgcctgacgtagcaatgaccggaaagtgcacccgggaatgcgacgagtacggccactcg
gactcctgctggatgcctgtgcgcacgtcgcccgagcgacggacatcaaagtcaaccacc
acccctcaacaaccaaagctttccacattcacgagcggcagcggcagcggcagcagcagt
agcagcggcagcagcggtagcagcagcggcggcagcagcagcggcgccgagcccggcagc
caagagaccctcgccatggccgccgtggccaacggagaccccgccgccgccgccgccgcc
gctcacatggtcggcgaccgcaaccgcaacctgctcaacaagaagatggcttcctcctcc
tcctacgaggccttcggctcgccttcctacggctctccgggacacggggaggagacgctg
caccaccccaccgaggagatcccgctggcgcctaccggggagtacaagccggcgtcctgc
ggcacgctgactcgacgggaggtgtacctgtga
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integrated database retrieval system
