Pseudoliparis swirei (Mariana hadal snailfish): 130212188
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Entry
130212188 CDS
T09868
Name
(RefSeq) uncharacterized protein LOC130212188
KO
K10631
E3 ubiquitin-protein ligase Topors [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130212188
03036 Chromosome and associated proteins [BR:
pswi03036
]
130212188
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pswi03037
]
130212188
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130212188
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130212188
UBL E3 ligases
130212188
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Centrosome formation proteins
Centriole proteins
130212188
Cilium and associated proteins [BR:
pswi03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
130212188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
zf-rbx1
zf-RING_5
zf-C3HC4_4
zf-ANAPC11
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
130212188
NCBI-ProteinID:
XP_056299303
LinkDB
All DBs
Position
21:complement(1939249..1945453)
Genome browser
AA seq
1701 aa
AA seq
DB search
MPLTVRNSSRRRRKTPEKKLPERPEEATSSAAARVMAPMRMKLRARRHDNAPAAAQAGGD
REEEEEEPEEGGRSRGSGRRRKAPDAAAAAPDASWSPPASVRAAMAAAEEASPDSKCPIC
LDRFTNLAHLDRCLHRFCFPCIREWSRSKAECPLCKQPFASILHSVRGEDDFKEYTLRPP
PANSSVAATVAMVAAMASAARSDHQMRLMLRRHRGADGGEAAARRRWGGGGGGRRAGVWE
WYLDTPPLTLPPLPRHPDVSPVAAEDSEEGEEPGEGGTRGGADPTERGVIFEGLTGLGGA
AAPDDRAARRLMTRLAARRRLQREGGAVRRLRERETVAFRRALYRNAVRVAAAGNHGQQR
DITAESFRRNPSHLNRLRPWLRRELTVLYGAHGSLVDIVQRIIMARVARHGLEDTPTIEE
ELRQFLLARTDHFLHELVSFARSPLSLESYDLQAAYEPPAAAVELDGTSSSSDVSSVIAI
SEEEEEEEPAGGGGAAERPAACGARDDALRAGSGLGTAAWDDETPGPSYSTADAPRSLAS
PPLSHAPREEADEEGGAKEEECLIVGYKKPIAERTPELVQLSSDTEEEEEEEEPPRLPPP
APPLSYLPTMPPSTSGEPKERDSWSGGSGNSVCALSPAAPDERERRPAGDGKSGGGEMAR
EKRKKRRKKRRSGTLSNPNRSIYPAMMRHRSHSSSPDSTWEFHCAQVSPLTSSPSRCSSS
SFSSSSSPPPAPTPSLSPDGRRGEKPGGKRKYKSRHLDGADGDPSRRPGGEEEARRRRES
GGRRADRSPSVEIVYEGVVSPDASRTPARERRRKRRRGIRRGSSPLIITLDSDSSLDAAG
SSSPISSQQTVDFSDLPALPSVRSGGGGGALGGAEIGELPVDILDRGSEGSEVADGDRDV
DVENLEESGFLLNDDEGPMGAAAANPKGSRPMGEKDAAANPPEALSSDGRLLASILDDLK
GNFDPGFHRRGAARPADRKRRFDSPASRTEVKEAPPLLKQASPVRSYNRNTPPPLKHKDA
GSPRRSPAPSSRGAADLKWNPVGSEGPSSTPRRRFARGDPAAASGASADVVRSRRHLAPV
DSPSARSELRARSASSRSHLEFNPAKLHSEEISSSGLSDSHPANSSPAFDFHSTETGWSN
QKPAADSTSSGLRGETGGTPSRPVAPVDLHPTSAASAGDTGGVHHDDAPPPALVSPVDFR
TRIPSSPVDSHSPSEREGRLPSTGSSVEPVDVHPGPRSTVDLHSSRAAAGELTDVKVSSL
ANHGAGWPCARLAPVDVHCPFQPVNVHSSSTTTGKHLRRTSLSSATIDALSEHGVSIGAR
SKPLHLRNHFDPRSRFSIDAHSELGVPIDALSEPEHGLSIDARSKPLHLRNHFDPRSRFS
IDARSELGVPIDALSEPEHGVSIDALSEHGVPIDTCSKPLHLRNHFDPRSRFSIDARSEL
GVPIDSLLEHGLSIDALSEHGVPIDALSEPEHGVSIDALSEPELGVPNDALSEHGVSIDA
LSEHGLSIDSCSKPLHLRNHFDPRSRFSFDARLELGVPIDALSEPELCVPIDALLEPELG
VSIDALSEPELGVPIDALSEPEHGVSIDALSEPEHGVSIDALSEPEHGVPIDALSEPEHG
VPIDALSEPEHGVPIDALSEPEHGVSIDALLEPEHGVSIDALLEPEHGVPIDALLEPEHG
VHIDALSEPEHGVPIDALSVL
NT seq
5106 nt
NT seq
+upstream
nt +downstream
nt
atgccgctcacggtgcggaactcttcccggaggaggagaaagacgccggagaagaagctc
ccggagcggccggaggaggcgacttcttccgctgctgctcgggtgatggcgcccatgagg
atgaagctgcgggcgcgtcgccatgacaacgcgcccgcagccgcgcaggcgggaggcgac
cgagaggaggaggaggaggagccagaggagggggggcggagccgaggcagcggcaggagg
aggaaggcgcccgacgcggcggcggcggcgcccgacgcctcctggtcccctccggcctcg
gtgcgggcggccatggcggcggcggaggaggcgtcgcccgactccaaatgcccgatctgc
ctggaccgcttcaccaacctggcgcacctggaccgctgcctgcaccgcttctgcttcccc
tgcatccgcgagtggtcgcgcagcaaggcggagtgtccgctctgcaagcagccgttcgcc
tccatcctgcactcggtgcgcggcgaggacgacttcaaggagtacacgctgcggccgccg
cccgccaacagcagcgtggcggccaccgtcgccatggtggccgccatggcgtcggccgcg
aggagcgaccaccagatgaggctgatgctgaggaggcacaggggggcggacggcggggag
gcggcggcgaggaggcggtggggggggggaggggggggcaggagggcgggggtgtgggag
tggtatctggacacccctcctctcacgctccctcctcttcctcgccatcccgacgtttct
cccgtcgcggcggaggacagcgaggagggggaggagccgggggagggcgggacgcgaggc
ggcgccgacccgacggagcgcggcgtgatattcgaggggctgacgggcctcggcggcgcg
gcggcgcccgacgaccgggcggcgcggcgcctgatgactcgcctggcggcgcggcggcgg
ctgcagcgagagggcggcgcggtgcggcggctgagggagagggagaccgtggccttccgc
cgcgccctctaccgcaacgccgtgcgggtcgccgccgccggtaaccacgggcaacagcgc
gacatcacggcggagagcttccgccggaaccccagccacctgaacaggctccgcccctgg
ctgcggcgagagctcacggtgctgtacggcgcccacggctcgctggtcgacatcgtccag
cggatcatcatggcgagggtcgcccgccacggcctggaggacacgcccaccatagaagaa
gagctgcggcaattcctgttggcgcgcaccgaccacttcctgcacgagctggtgagcttc
gcccgctcgccgctcagcctggagagctacgacctgcaggcggcgtacgagccgccggcc
gccgccgtggagctggacggcacgagctcctcctccgacgtcagctccgtcatcgccatc
tcggaggaagaggaagaggaggagccggccggaggaggaggggcggcggagcggccggcg
gcgtgcggcgctcgagacgacgccctccgagcggggagcggcctcggcacggcggcctgg
gacgacgagacgccgggcccctcctactccaccgcggacgcgccgcgatcgctcgcctcg
ccgccgttaagccacgcccctcgagaggaggcggacgaggagggaggagccaaggaggag
gagtgtctgattgtgggatacaagaagccgatcgcggagcggactcctgagctggtgcag
ctctcctccgacaccgaggaggaggaggaggaggaggagcctccccgcctcccccccccc
gccccccccctctcttacctacccacaatgcctccctccacgtcgggcgagccgaaggag
agagactcgtggtcgggcggctctgggaactccgtctgcgcgctcagcccggcggcgccc
gacgagagagagcggcgcccggcgggagacgggaagtctggcggtggcgagatggcaaga
gagaagaggaagaagaggaggaagaagaggaggagcggcaccctgtccaaccccaaccgc
tccatctaccccgccatgatgcgccaccgctcgcactcctcctcgcctgactccacctgg
gagttccactgcgcccaggtgtccccgctcacctcctcgccctcccgttgctcctcttcc
tccttctcctcttcctcctccccgccgccggcgccgacgccttcgctctcccccgacggc
cgccgcggggagaaacccggcgggaagaggaagtacaagagccgccacctggacggcgcc
gacggggacccgagccggaggccgggcggcgaggaggaggcgaggaggaggcgcgagagc
ggcggccggcgggccgaccggagcccgagcgtggagatcgtctacgagggcgtcgtctcc
ccggacgcctcgcggaccccggcccgcgagcggcggcggaagcgacggcgagggatccgg
cgcggcagctcgccgctcatcatcacgctggacagcgacagcagcctggacgccgccggc
agcagcagtccgatcagcagccagcagaccgtcgacttctcggacctccccgctctcccg
tcggtgcgctcgggcggagggggcggagccctgggcggcgcggaaatcggcgagcttccc
gtcgacatcctggaccggggttccgaagggtcggaggtcgccgacggcgaccgcgacgtg
gacgtggaaaacctcgaggagagcggcttcctgctgaacgacgacgaaggaccaatggga
gccgccgccgcgaatccgaaaggctctcggccaatgggagagaaggacgccgctgcaaat
ccgcccgaggctttatcctcggacggccgtctcctcgcctccatcctcgacgacctgaag
ggaaactttgaccccgggttccatcggcgcggcgcggcgagaccggcggacaggaagcgg
cgcttcgactcgccggcgtccagaacggaggtgaaggaggcccctcccctcctgaagcag
gcgagtcccgtcaggtcgtacaacaggaacacgccgccgccgctaaagcacaaagacgcc
gggagtccgcgccgctcgccggcgccctcgtcccgcggcgccgccgacctcaagtggaac
cccgtcggctccgaaggcccctcgtcgacgccgaggagacgtttcgcgagaggcgatccg
gccgccgcgagcggcgcctcagccgatgttgtgcgttcccgccgtcatttggcgcccgtc
gactcaccctcggctcgctctgagctccgagcccggtcggcgtcttctcgttcgcatctg
gagttcaatcctgcaaagttacattccgaggaaatatcctcttctggtctgagcgactcg
catccagccaattcttcacctgcctttgatttccattcaacagagactggctggtccaat
caaaagccggctgctgattctacctcctcgggtctcaggggggagaccggcgggacgcct
tctcgcccggtagcgcccgttgacctccatcctaccagcgctgcttctgctggagacacc
gggggcgtccaccatgacgacgctccgccccctgctttggtttcacccgttgatttcagg
actcggatcccctcctcgcccgttgactcccactcgcccagtgagagagaggggcgcttg
ccctctacaggtagctcggtggagcccgttgacgtgcatcctggtcccagatctaccgtt
gacctccactcttccagagcggctgcaggagaactgactgacgtcaaggtgtcatcgtta
gccaatcacggggccggatggccttgcgctcgcctggcacccgttgacgtgcattgtcct
tttcaacccgttaacgtacattcttctagcaccacgacaggtaaacacctgagacgcacg
tccttatcctccgctaccattgacgccctctcagaacacggtgtctccattggcgcccgc
tcaaaacctctacacctccgcaaccactttgatccaagatcccgtttctccattgacgcc
cactcggaactcggtgtccccattgacgccctctcggaaccagaacacggtctctccatt
gacgcccgctcaaaacctctacacctccgcaaccactttgatccaagatcccgtttctcc
attgacgcccgctcggaactcggtgtccccattgacgccctctcggaaccagaacacggt
gtctccattgacgccctctcggaacacggtgtccccattgacacctgctcaaaacctcta
cacctccgcaaccactttgatccaagatcccgtttctccattgacgcccgctcggaactc
ggtgtccccattgactccctcttggaacacggtctctccattgacgccctctcggaacac
ggtgtccccattgacgccctctcggaaccagaacacggtgtctccattgacgccctctcg
gaaccagaactcggtgtccccaatgacgccctttcggaacacggtgtctccattgacgcc
ctctcggaacacggtctctccattgactcctgctcaaaacctctacacctccgcaaccac
tttgatccaagatcccgtttctcctttgacgcccgcttggaactcggtgtccccattgac
gccctctcggaaccagaactctgtgtccccattgacgccctcttggaaccagaactcggt
gtctccattgacgccctctcggaaccagaactcggtgtccccattgacgccctctcggaa
ccagaacacggtgtctccattgacgccctctcggaaccagaacacggtgtctccattgac
gccctctcggaaccagaacacggtgtccccattgacgccctctcggaaccagaacacggt
gtccccattgacgccctctcggaaccagaacacggtgtccccattgacgccctctcggaa
ccagaacacggtgtctccattgacgccctcttagaaccagaacacggtgtctccattgac
gccctcttagaaccagaacacggtgtccccattgacgccctcttggaaccagaacacggt
gtccacattgacgccctctcggaaccagaacacggtgtccccattgacgccctctcagtt
ctttga
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