Pseudoliparis swirei (Mariana hadal snailfish): 130212257
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Entry
130212257 CDS
T09868
Symbol
cadm1a
Name
(RefSeq) cell adhesion molecule 1a isoform X1
KO
K06781
cell adhesion molecule 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
130212257 (cadm1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130212257 (cadm1a)
Cell adhesion molecules [BR:
pswi04515
]
Immunoglobulin superfamily
Nectin family
130212257 (cadm1a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
Ig_5
C1-set
Motif
Other DBs
NCBI-GeneID:
130212257
NCBI-ProteinID:
XP_056299432
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Position
3:19686909..20076377
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AA seq
439 aa
AA seq
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MAITGSGSLATILFLFMFQASLLKGAAQEPVVSQNLVTDNVSVVEGEMAIISCRVKDNDD
SVIQLLNPNRQTIYFRDVRPLKDARFQLVNFSDNELRVSLSNVSLSDEGRYVCQLYTDPP
QEAYADITVLVPPGNPIIEARDEVLSEGNETEMTCTAMSSKPAATIRWMKGDKELPGKPK
VELTYDKMYTVTSRLTFTVSKEDDGVPVSCIIDHPAVKDFQAQKYLEVQYKPEVKILVEF
PPGLTREGENLELTCQAKGKPQPQRVNWLKVDDDVPSHAVISGGDLYIENLNKSYNGTYR
CVASNAVGESFDDYILYVYDAPSTTPIPTTTTTTITTTISFLEANPDTGPSTEPAAHDSR
AGEGTPRTVDHAVIGGVVAVVVFAMLCLLIVLGRYFARHKGTYFTHEAKGADDAADADTA
IINAEGGHTNSDEKKEYYI
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcactggcagcggttctctcgcgactattctctttttattcatgtttcaagcg
tctcttctcaaaggagcggcacaagaaccagtggtgagtcagaacctggtgacggacaat
gtgtcagtggtggagggcgagatggccatcatcagctgtcgggtgaaggacaacgacgac
tccgtcatccagctgctcaaccccaacagacagacgatttacttcagagacgtgagacca
ctgaaagacgctcgctttcagctggtgaacttctcggacaatgagttgcgggtgtcgctg
tctaacgtctcgctgtcggacgagggtcgatatgtctgccagctctacacggaccccccg
caggaagcctacgccgacatcaccgtgctggttcctccaggtaaccccatcatcgaggca
agggatgaggtcctgagcgagggcaacgagacggagatgacctgcaccgccatgagcagt
aagcctgctgccaccatccgatggatgaagggagataaagagcttccaggcaagcccaag
gtcgagctgacctacgacaagatgtacacagtcaccagccggctgacgttcactgtgagt
aaggaggacgatggtgtaccagtgtcttgcatcatagaccaccctgcagtcaaggacttc
caagcacagaaatacctggaggttcagtacaaaccagaggtaaagatcctggtagaattt
cctccgggtctcaccagggaaggagagaatctggaactgacgtgtcaggccaaaggcaaa
ccccagccacagcgggtgaactggttgaaggtggatgacgacgtgccatcccatgccgtc
atctccggtggtgacctttacatcgaaaacctgaacaagtcctacaacggaacctaccgc
tgtgtggcttccaacgcggtgggggagtccttcgacgactacatcctctacgtctatgat
gctccctccactacccctatacccacaaccactaccaccaccatcaccaccaccatctcc
ttccttgaggccaatccagacactgggcccagcactgaacctgcagctcatgattctcga
gctggagaaggaacacccaggacggtggaccatgcagtgattggaggagtggtggccgtg
gtcgtcttcgccatgctctgtcttctcatcgtcttggggcgctacttcgcaagacacaaa
ggtacctacttcacgcacgaagccaaaggcgccgatgacgcggcggacgcggacaccgcc
atcatcaacgcagagggtggccacaccaactcggacgaaaagaaagagtactacatctaa
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