Pseudoliparis swirei (Mariana hadal snailfish): 130212272
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Entry
130212272 CDS
T09868
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03020
RNA polymerase
pswi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
130212272 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
130212272 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130212272 (polr2a)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130212272 (polr2a)
Enzymes [BR:
pswi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
130212272 (polr2a)
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
130212272 (polr2a)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
130212272 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
130212272
NCBI-ProteinID:
XP_056299434
LinkDB
All DBs
Position
21:complement(11850845..11864021)
Genome browser
AA seq
1959 aa
AA seq
DB search
MNGPPSGDSACPLRTVKRVQFGIISPEELKRMSVTEGGIKYAETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLTKIMKILRCVCFFCSKLLVDST
NPKIKDILIKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHG
GCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLNPERVHEIFKRISDEEDVILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMIDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPMLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDVVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETKAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLDRGEVMNLLMFLSTWDGKVPQPAIIKPRPMWTGKQIFSLIIPGHINV
IRTHSTHPDEEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNVVTLKPSHKAFEKKFRFDCTNERALRRILQEDVVKDVLTNAHVQGSLEKEFDKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINIRTPTDLNPLRVVEGLQDLRKKLVI
VNGEDPLSQQAQENATLLINIHLRATLCSKRMTEEFRLSTEAYDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQASRDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQICKVYMHLPQTDNKKKIII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
NHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHAESDPMKGVSENIMLGQLVPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPSGMF
FGTVASPMSGMSPAMTPWNTGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPSSP
RFTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYTP
TSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSATSPKYSPTSPT
YSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5880 nt
NT seq
+upstream
nt +downstream
nt
atgaacggaccgccctccggcgacagcgcatgcccattgcgcacggtcaagagagttcag
ttcggcatcatcagcccagaagagcttaaacggatgtccgttacggaagggggaatcaag
tacgccgaaacaacagagggaggacgtcctaaacttggtggtcttatggacccaagacaa
ggggtcatagaacgaacgggaagatgtcagacatgtgcaggcaacatgacggaatgcccc
ggccacttcgggcacatagaactggcgaagccagttttccacgtcggcttcttaacaaag
ataatgaagattcttcgatgcgtttgtttcttttgctcgaagctgttagtggattcgacc
aatccaaagatcaaagacatcctgataaaatcgaaagggcagccgaggaaacgtttgaca
catgtgtacgagctgtgcaaaggaaaaaatatttgcgaaggaggagaggaaatggacaac
aaatttggaatggaacagcaggagactgaagaggacatcaccaaggagaagggccacggt
ggatgtgggcgctaccagccacgcatcagacgcaccggcttggagctgtatgctgagtgg
aagcacgtcaacgaggattcgcaagaaaagaaaatcctgctcaaccccgagcgcgtgcac
gagatctttaagcgcatctcggatgaagaggacgtcatcttgggcatggaccccaagttt
gcccgaccagaatggatgattgtaactgtgttgcccgtgcctcccctggctgtcaggcct
gctgtagttatgcagggctcggctcgaaaccaggatgacttgacccacaagctggccgac
atcgtcaaaatcaacaaccagctgagaagaaacgagcagagtggcgctgcagcgcacgtc
atagctgaagatgtcaaactgctccagtttcatgttgccaccatgattgacaacgaattg
ccaggcctaccaagggcaatgcaaaagtctggccgccctctcaaatccttaaaacagcgt
ctaaaggggaaggagggccgagtccgaggtaacctgatgggcaagcgtgtggacttctct
gcacgaaccgtcatcaccccagacccgatgttgcaaatcgaccaagtgggcgtaccgcga
tccatagcggccaatatgacctttccagaaatagtcacaccctttaacatcgacagacta
caagagctggtgcgaagaggcaacagccagtacccgggagccaagtacatcatccgtgac
aatggagacagaattgacctgcgattccacccgaaaccaagtgacctccacctgcaaatt
ggctacaaggtggaaagacacatgtgtgacggcgacgtcgtcatcttcaacagacaacct
acactacataaaatgtccatgatggggcacagggtgcggatcctgccgtggtccacgttt
cgactcaacctcagtgtcaccactccctacaatgctgactttgacggggatgagatgaac
ctccacctgcctcagtccctcgagacgaaggcggagattcaggagctggctatggtgccg
cgtatgatcgtcaccccccagtccaacaggcccgtcatgggtatcgtgcaggacaccctc
acggccgtccgcaagttcaccaaaagagatgtcttcttagatcggggggaagtgatgaac
ctcctcatgttcctctccacttgggacgggaaagtgcctcagccggccatcatcaagccc
cgtccgatgtggacgggcaagcagatcttcagcctaatcattcccggacacattaacgtg
atccgcacacacagcacccatccggacgaggaagacagtggcccttacaagcacatctca
cctggagacaccaaggtcgtggtggagaacggcgagttgatcatgggaatcctgtgtaag
aaatctctgggaacctcagccggctccctcgtccacatctcctacctggagatgggccac
gacatcaccagactcttctactccaacattcagactgtggtcaacaactggctgctcatc
gagggtcattccattggtatcggtgactctattgctgatgccaagacctaccttgacatc
cagaacaccatcaagaaagccaaacaggatgtgatagaagtcatcgagaaagcccacaac
aacgagctggagccgacccctggtaacacgctgaggcagacctttgagaaccaggtgaat
cgtatcctcaacgacgctcgtgacaaaacgggatcctcagcccagaagtctctgtccgag
tacaacaacttcaagtccatggtggtggctggttctaagggatcaaagattaacatctcg
caggttattgccgtggtggggcagcagaacgtggagggtaaacgaatcccctttggcttc
aaacaccgcacgctgcctcacttcatcaaggatgattacggccctgagagcagaggcttc
gtggagaactcctacctggctggcctgactccaacagagttcttcttccacgccatggga
ggccgagagggtcttatcgatacagctgtcaagactgccgagactggttacatccagcgg
cgtctgatcaagtccatggagtcggtgatggtgaagtacgacggcacggtgcgtaactcc
atcaaccaggtggttcagttgcgttacggcgaggacggcctggcgggagagaacgtcgag
ttccaaaacgtggtgacgctcaaaccctcgcacaaggccttcgaaaagaagtttaggttt
gattgcaccaatgagcgagcgctgcggcggatactgcaggaagacgttgtgaaggacgtg
ctgaccaatgcccacgtgcagggatccctggaaaaggagtttgacaagatgaaggaggac
agagagatcctccgagccattttccccactggggacagcaaggtggtgctgccatgcaac
ctggccagaatgatctggaacgctcagaagatcttccgcatcaacattcgaaccccaaca
gacctcaatcctctcagggtggtcgagggtctgcaggatctgcgtaagaagctggtgatt
gtgaatggcgaggacccgctgagtcaacaggcccaggagaacgccactctgctcatcaac
atccacctgcgcgccacgctctgctccaagcgcatgaccgaggagttccgcctgtccacg
gaggcttacgactggcttctgggagagatcgagaccaagttcaaccagtccatcgctcac
ccgggtgaaatggtcggcgccctggccgctcagtctctgggcgagccggccacccagatg
accctgaacaccttccactacgccggtgtgtcggccaagaacgtgacactcggtgtgcct
cgtctgaaggagttgatcaacatctccaagaggcccaaaacgccctcgctgaccgtgttc
ctgctgggtcaggcgtcccgcgacgccgagagggccaaggacatcctctgtcggctggag
cacaccacgctgcgaaaggtgacggccaacaccgccatctactacgaccccaacccccaa
aacacggtggtggccgaggaccaggagtgggtgaacgtctactacgagatgcccgacttc
gacgtgacgcgcatctcaccgtggctgctgcgcatcgagctcgaccgcaagcacatgacg
gatcgcaagctgacgatggagcagattgcagagaagatcaacgcaggtttcggagatgac
ctgaactgtatcttcaatgacgacaacgccgagaagctcgtcctgcgaatccgaatcatg
aacagcgatgagaataagttccaagaggatgaggaggtggtggacaagatggatgatgac
gtgttcttgaggtgcatcgaatccaacatgctgacggacatgaccctccagggcattgag
cagatctgcaaggtgtacatgcacttgccccagactgacaataagaagaagatcatcatc
acagaggaaggcgagttcaaggccctgcaggagtggatcctggagacagacggcgtgagc
ctcatgagggtcctcagcgagaaggacgtcgatcccgtccggaccacctccaacgacatc
gtggagatcttcacggtcttgggaattgaagcggtgcgaaaggctctggagagggagttg
aaccacgtcatctcctttgacggctcctacgtcaactaccgtcacttggctctgctgtgt
gacaccatgacctgccgcggtcacctgatggccatcacgcgtcacggcatcaaccgtcaa
gacacggggccgctcatgaagtgttcctttgaggagacggtggatgtgttgatggaggcg
tcttcccatgccgagagcgaccccatgaagggcgtgtcggagaacatcatgctcggccag
ctcgtcccggcgggtacgggatgcttcgacctgctgttggacgcggagaagtgtaaatac
ggcatggagatcccgaccaacatccccggcatcagcgtggccggacccagcggaatgttc
tttggcacggtggcgagtcccatgagcggcatgtcgcccgccatgaccccgtggaacacc
ggagcgacgccggcctacggcgcctggtctccgagtatcggaagcggcatgacccccgga
gcagccggcttctctcccagcgcggcgtcggacgctagtggcttctctccgggctattcc
ccggcctggtctcccactccggggtctccggggtccccgggacctgccagcccgtacatc
ccgtctccaggtggagccatgtcacctaactactcccccacctccccggcctacgagccg
cgctcccccggaggctacaccccgcagagccccggctactcccccacttctccctcttac
tccccgaccagccccaactacagcccgacgtctccctcctactcgcccacctcgcccagt
tactccccgacgtctccgtcctactcgcccacgtcgccgtcctactccccgacgtccccg
tcctactcgcccacctccccctcctactcgcccacctccccctcctactctcccacctcg
ccgagctacagcccgacgtcgccgagctacagcccgacgtcgcccagctactctcccacc
tcgccttcctactcccccacctccccctcttattctccaacctccccgtcctactccccc
acctccccgtcctactcccccacctctccctcctactcgccgactagcccgagctacagc
ccgacgtcgcccaactacacgcccacctcgcccagctactcccccacttctccttcctac
tcgcctacatcgccctcttattctccaacctcccccaactacaccccgaccagccccaac
tactcccccacctctccgtcttactcccccacctctccgtcctactccccctccagtccg
cgtttcaccccgcagtcgcccacctacacgcccagctccccctcatacagccccagctct
ccctcctactcccccacctcccccaaatacaccccgacgtccccctcgtacagccccagt
tccccggagtacacccccacctctcccaagtactccccgacatcgccaaagtacaccccg
acatcgccgaagtactcgcccacttctcccacttactcgccgacgactccaaaatacagc
cccacctctcccacctactcccccacctcgcccacatacacccccaccagccccaaatac
tcccccacctcccctacttactccgcgacttcacccaagtactcgcccacgtctcctacg
tactcgcccactagtcctaaaggctccacgtacagccccacctcccccggatacagcccc
acctcccccacctacagcccggccatcagcccggacgacagcgacgaggagaataactga
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integrated database retrieval system
