Pseudoliparis swirei (Mariana hadal snailfish): 130212550
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Entry
130212550 CDS
T09868
Name
(RefSeq) retinoic acid receptor RXR-beta-A-like isoform X1
KO
K08524
retinoid X receptor alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03320
PPAR signaling pathway
pswi04148
Efferocytosis
pswi04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130212550
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
130212550
03320 PPAR signaling pathway
130212550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130212550
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
pswi03310
]
130212550
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
130212550
Nuclear receptors [BR:
pswi03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
130212550
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
130212550
NCBI-ProteinID:
XP_056299508
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Position
22:complement(11276769..11284997)
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AA seq
444 aa
AA seq
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MSSQQLNSSASNSPTNILGSPFSVISPSLNSPVISPSLGFGPISNSQISSSAPISGMHSI
SSSEDIKPPFGLRPMPAHSPGIMLSQKRMCVICGDRSSGKHYGVYSCEGCKGFFKRTVRK
DLSYTCRDNKECLVDKRQRNRCQYCRYQKCLAMGMKREVIKHVKWIKEDGKDEGWMTVQE
ERQRNREREGELEFSVGVNEEMPVEKILEAETAVEQKTELHSDGGSAGNSPHDAVTNICQ
TADKQLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIGLKDGVLLASEL
QRDNAHNAGVGAIFDRESVQSAEVGAIFDRVLTELVNKMRDMQMDKTELGCLRAIVLFNP
DAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF
FKLIGDTPIDTFLMEMLEAPHQLS
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcacagcaactcaacagttcagcctccaacagccccaccaacatcctgggttct
cctttctcagttatcagtccctcgcttaactccccagtaatctcgccgtcactcggattt
ggacccatcagcaacagtcagatttcttcttcagcacctatatcagggatgcactcaatc
agcagctctgaagatatcaagcctccatttggcctgaggcctatgccagctcacagccct
ggaataatgttgtctcagaaacgcatgtgtgtcatctgtggagaccgctcttctggcaag
cactacggagtgtacagctgtgagggttgcaaaggtttcttcaaacgaactgtgcgcaaa
gaccttagctatacctgcagagataacaaagagtgcctggtcgacaaacgccagcgcaat
cgctgccagtactgccgctaccagaagtgcctggccatgggcatgaagagggaagtgatc
aaacatgtaaagtggataaaagaagatggaaaagatgagggatggatgaccgtccaggag
gagcgccagcggaacagggagcgcgaaggcgagctggagttcagcgtgggagtgaatgag
gagatgcccgtcgagaagattttagaggcagaaactgctgtggagcagaagaccgagctt
cactctgacggcggctctgcaggcaactctccccatgatgccgtgaccaacatctgtcag
actgcagacaagcagctgtttgccttggtggagtgggcaaagagaatccctcatttttct
gaactgccccttgatgaccaggtcatcctcctgcgtgcaggctggaatgagctcctcatt
gcctcattctcccaccgctccatcggtctgaaggatggagttctcttggcctctgagctg
cagcgcgacaacgcacacaacgccggagttggagccatttttgacagggagagtgtgcag
agtgcagaggtcggtgccatatttgacagggtccttacagagctcgtcaataaaatgaga
gatatgcaaatggacaaaacggagctgggctgcctccgagccatcgtcctattcaaccca
gatgctaaagggctctccaacaccggcgaggtggaactccttcgagaaaaggtctatgca
tcattggaagcctactgcaaacagaaatacccggagcagcagggaaggtttgctaagctc
ctcctgcgactgccagcactgcgatccatcggcttgaagtgcttggagcatcttttcttt
ttcaagctgatcggtgacacacctattgacacttttctcatggaaatgcttgaagctccc
catcagttgtcataa
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