Pseudoliparis swirei (Mariana hadal snailfish): 130212611
Help
Entry
130212611 CDS
T09868
Symbol
ubr5
Name
(RefSeq) E3 ubiquitin-protein ligase UBR5 isoform X1
KO
K10593
E3 ubiquitin-protein ligase EDD1 [EC:
2.3.2.26
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130212611 (ubr5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130212611 (ubr5)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
130212611 (ubr5)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
HECT type E3
130212611 (ubr5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
E3_UbLigase_EDD
MLLE
zf-UBR
Motif
Other DBs
NCBI-GeneID:
130212611
NCBI-ProteinID:
XP_056299642
LinkDB
All DBs
Position
22:18409310..18445257
Genome browser
AA seq
2868 aa
AA seq
DB search
MTSIHFVVHPLPGTEDQLNDRLREVSEKLNKYSYNSHPHLSLLEQATLKQCVVGPNHAGF
LLEDGRVCRISFAVQPDRLELSKPDGNDGSKLSSGSGTGRSSRPGRTSDPPWFLSGSDTL
GRLAGNTLGSRWSSGVNGGSGGGGSGGGAGGGGAGGGSSGGGGGGGGGTSGRSSTAARDS
RRQTRVIRTGRDRGSGLLGSQPQPVIPASVIPEELITQAQVVLQGKSRSVIIRELQRTNL
DVNLAVNNLLSRDDEDGDDGDDTASESYLPGEDLMSLLDADIHSAHPSVIIDADAMFSED
ISYFGYPSFRRSSLSRLGSSRVLLLPLERDSELLRERESVLRLRERRWLDGASFDTERGS
TSREGEPSWDKKSIPVQSPVSLGEELQWWPDKDGVKFVSIGAMFSELVAVSSKGELYQWK
WSEPEPYRNAQNPSVHHPRVSFLGLTNEKITLLSANSIRATVATETNKVATWVDDTLSTV
ASKLEHSAQAFPELQGERMMSLHCCALYTCAQLENSLYWWCSGSVHQSHTQNNRGVVPFS
QRKKMLEKARAKNKKPKSSAGISSIPNITVGTQVCLRNNPLYHAGAVAFSVNAGIPKVGV
LLESVWNMNDSCRFQLRSPESLKNMEKTTKTQEIKTESKPELVKTEMGPPPSPASTCSDT
SSIASSASLPYKRRRSTPAPKEEEKVNEEQWPLREVVFVEDVKNVPVGKVLKVDGAYVAV
KFPGTSSSMNNQTTAAPTDSDPSSLLQDCRLLRIDELQVVKTGGTPKVPDCFQRTPKKLC
IPEKAEILAVNVDSKGVHAVLKTGNWVRYCIFDLATGKAEQENNFPTSNLAFLGQSERNV
AIFTAGQESPIILRDGNGTIYPMAKDCMGGIRDPDWLDLPPINSLGMGVHSLANLPSNST
IKKKAAIIIMAVEKQTLMQHVLRCDYEACRQYLVNLEQAFLLDQGSQALGALLNHRCDGN
RNILHAAVSVCFPVSNKETKEEEEAERSERNTFAERLSAVEAIANAISVVSSNSSGNRTG
SSSSRGLRLREMMRRSLRAAGLGRHESGPSSSDHQDPVSPPIAPPSWVPDPPPMDPDGDI
DFILAPAVGSLTTASTGTSQGPSTSTIPAGPSTEPSVVESKDRKANAHLILKLMCDSVVL
RPHLRGLLSAKDARGMTPFMLAVSGRAYPAAITVLEAAQKMATVGDPGIAEKEDADTVFM
EMICPSGTNPDDSPLYVLCCNDTCSFTWTGAEHINQDIFECRTCGLLESLCCCTECARVC
HKGHDCKLKRTSPTAYCDCWEKCKCKTLIAGQKAARLDLLYRLLTTTNLVTTPNSRGEHI
LLFLVQTVARQSVEHCQYRPPRIREDRNRKATNAEDSDMPDHDLEPPRFAQLALERVLQD
WNALKFMIMFGSQENKDPLSASSRIAHLLPEEQVYLNQQSGTIRLDCFTHCLIVKCAPDI
TFIDTLLGTLVKELQNKYTPGRREEAVNVTRRFLRSVARVFVILSVEMASSKKKNNFIPQ
PIGKCRRVFQALLPYAVEELCNVAESLIVPVRMGIARPTAPFTLASTSIDAVQGSEELFS
VEPLPPRPSPDQSSSSSQTAASYIIRNPQPRRSSQSQPVRGRDEEHDDIVSADVEEVEVV
EGVAGEEDHHDDQEEQGEENAEAEGQHDEHDEDGSDMELDLLAAAETESDSESNHSNQDN
ASGRRSVVTAATAGSEAGASSVPAFFSEDDSQSNDSSDSDSSSSQSDDVDQETFLLDEPL
ERTTSTSHANSAAQAPRSMQWAVRNTPSQRTTGSAPSSSSTPAASSTGLIYIDPTNLRRS
SAISSSAAAAAAALEASNSSSYLTSASSLARAYSIVIRQISDLMSLIPKYNHLVYSQYPA
AVKLTYQDAFNLQNYVEEKLIPTWNWMVSIMDSTEAQLRYGSALSSAGDPGHPSHPLHAS
QHSARRERMTAREEASLRTLEGRRRAATLLTARQGMMSARGDFLNYALSLMRSHNDEHSD
VLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDTPQMDRKRNREILELGLDNDDSEHEN
DEDTNQSSTLQDKDEDPVPAETGQIHPFFRRSDSMTFLGCIPPNPFDVPLAEAIPLADQP
HLLQPNARKEDLFGRPSQGLYSSSYMATKGLAETSMDRNCLEVNMGSSLPSPSQILPTKM
SYSANLKNVMSMETGQRSTENQSLAEQELEASKPGPSPHDLAAQLKSSLLAEIGLTESDG
PPLPSFRPHCSFMGMMISHDMLLGRWRLSLELFGRVFMEDVGAEPGSVHFYILFIEILTE
LGGFEVKESKFRREMEKLRNLQSRDLALEVDRDRDQLIQQTMRQLNTHFGRRCTTTPMAV
HRVKVTFKDEPGEGSGVARSFYTAIALALLSNDKLPNLDCVQSVSKGMQASSTCHHDYNS
NLMQRLRNRDRERERRSGGLRAGSRRDRDRDSRRQLSIDTRPFRPSSEGNPSDEPDPLPA
HRQALGERLYPRVHAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELLIAH
GRENGADSILDLGLLEAPEKAQQLENRKRHGSTRSVVDMELDDPDDGDDNAPLFYQPGKR
GFYSPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFF
DPVMYESLRQLIRHSQAGEADAVFAAMDLAFAIDLCKEEGAGQVELLSGGVNMPVTPLNV
YEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNALEDLTAEDFRLLVNGCGEVNVQMLI
SFTSFNDESGENADKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMPS
ITIRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGFV
NT seq
8607 nt
NT seq
+upstream
nt +downstream
nt
atgacatctatacacttcgtggttcacccgttgccggggaccgaggatcagctcaatgac
aggctccgtgaagtctcggagaaactcaacaaatacagctataacagtcatccgcacctt
agtctgctggagcaggccaccctaaaacagtgtgttgttggtccaaaccatgcaggattt
ctccttgaggatggacgagtgtgcagaatcagcttcgctgtccagcccgaccgcctggag
ctcagcaaaccggatggcaacgatggttcaaagttgagcagtggttcagggacaggaagg
agctccaggccaggcaggactagtgatccgccctggttcctgtctggctctgacacactg
ggcagactggcaggcaacacccttgggagtcgctggagctctggcgtaaacggaggcagc
ggaggaggtggaagtggaggaggagcagggggtggcggagctggaggtggcagcagtgga
ggaggagggggcggaggcggaggcacgtccgggaggtcatcgacggcggctcgcgattcc
cgccggcagacccgggtgatccgtacagggagagatcgcggctcaggcctactgggtagc
cagcctcagccagtcataccagcttctgtcatccctgaagaacttattactcaggctcag
gtggtcctccaggggaagtccaggagtgtgatcattagggaactccagcggaccaacttg
gatgtcaacctggccgtcaacaacctgctgagccgggatgatgaagatggagatgatgga
gacgacacagccagcgagtcctacctccctggagaggacctgatgtccctattggatgca
gacattcactcagcccatcccagtgtgattattgatgctgatgctatgttctctgaagac
atcagctactttggctacccctcttttagacgctcctcactgtctcgcctcggatcctcc
agagttctccttcttcccttagagcgcgactccgaactgttgcgcgagcgagagtccgtg
ttgaggttgcgcgagcgccgctggctggatggagcctcgttcgacaccgaacggggatcc
accagccgcgagggtgagccaagctgggacaagaagagcatcccagtccagagccctgtc
tccttgggagaggagctccagtggtggcctgacaaggatggtgtaaagtttgtgagcatc
ggagccatgttctcagagctggtggcagtcagctccaaaggagagctgtatcagtggaag
tggagcgaacctgaaccctacaggaatgcacagaatccatccgttcatcacccgcgtgta
tccttcctgggcctgaccaatgagaagatcaccttattgtctgccaatagcatcagagcc
actgtagccacagagaccaacaaggtggcaacatgggtggacgacacactgagtacagtg
gcctctaagctggagcacagtgctcaggctttccctgagctgcagggtgaacgtatgatg
tcgctgcactgctgcgcgctctacacgtgtgcacagctggagaatagcctctactggtgg
tgtagcgggagcgttcatcaaagtcacacgcaaaacaataggggtgttgtgccttttagt
caacggaagaagatgcttgaaaaggccagagccaagaacaaaaagccaaagtccagcgct
ggcatctcctcgataccaaacatcaccgtgggaacgcaggtgtgcttgaggaataacccc
ctctaccatgccggcgcagtggccttttctgtcaatgctgggattcccaaggttggcgtc
ctgttggagtcggtctggaacatgaacgacagttgcaggttccagctgcgctccccagag
agcctaaagaacatggaaaagaccaccaagacccaggaaatcaagacggaaagcaaacct
gagctggtgaagactgagatgggtccccctccctccccggcatcgacctgcagcgatacc
tcttccatagcgagcagtgcctcgctgccctacaagcgaaggcgttccacccctgctccc
aaagaggaagaaaaggtgaatgaggagcagtggccgctcagagaggtggtgtttgtggag
gacgttaaaaatgtcccagtgggaaaggtgcttaaagtggatggcgcatatgttgctgtg
aagtttccagggacatcaagcagcatgaataaccagaccactgctgctcccactgactcc
gacccatcttcactgctgcaggactgcaggcttctccgaatcgacgagctgcaggtggtc
aaaactggcgggactcctaaagttccagattgttttcagcgcacacctaaaaagctctgt
atcccggaaaaggcagagattctggctgtgaatgttgactccaaaggagttcacgcagta
ctgaaaactggtaactgggtgaggtactgtatctttgacctggccacgggcaaggctgaa
caggagaataacttccccactagtaacctggccttcctgggccagagtgagcgcaatgtg
gccatctttactgcaggacaggaatctcccatcatccttcgagatggaaacggcacaata
tacccaatggctaaagactgcatgggtggaattcgagatcctgattggttggacctgcca
cctataaacagcctgggaatgggggtgcactctctggccaacctcccttctaactctaca
attaaaaagaaagctgctattattatcatggctgtcgagaaacaaacgctgatgcagcac
gtgctgcgttgtgactacgaggcttgccggcagtatctggtgaaccttgagcaggcgttc
ctgttggatcaggggagccaggccctcggagcacttttgaatcatcgctgtgatgggaac
cgaaacatcctccatgctgccgtctctgtgtgcttccctgttagtaacaaggagaccaaa
gaggaggaagaggctgaaaggtcggagagaaacacatttgcagagcgtctatctgctgtg
gaggcaattgccaacgccatctctgtagtgtcgagcaatagttctgggaatcggaccggc
tcctccagcagcagagggcttcgtctgagggagatgatgcggaggtctctgagagcagca
ggtcttggccgtcatgagtccggcccgtcgtcaagcgatcaccaagacccagtgtctcca
cccattgcaccgccaagctgggtccctgatcccccacccatggaccctgacggtgacatt
gacttcattctagcaccagctgtgggttcactgaccaccgcctccactgggacgagccag
ggacccagcacctccaccataccagcaggcccgtcaactgagccatctgtagtcgaatct
aaagacaggaaggccaacgcccacctaatcctgaagctgatgtgtgacagtgttgttctg
aggccacacctacgagggctactctctgccaaggatgcccgtggaatgaccccattcatg
ttggcagtcagtgggagagcctacccagcagccattactgtactggaggctgctcagaaa
atggccacggtgggtgacccgggcattgcggagaaggaggatgcagacactgtgttcatg
gaaatgatttgcccctcggggaccaatccagatgattcgcccctctatgttctctgctgc
aatgatacctgcagtttcacttggactggagctgagcacattaaccaggatatctttgag
tgtcggacctgcggtttgctcgagtccctctgctgctgcactgagtgtgcaagggtgtgt
cacaaaggacacgactgcaagctgaagaggacctctcccacagcatactgtgactgctgg
gagaaatgtaagtgcaagactttgatcgccggccagaaggctgctcgtctggatctgctc
tacaggttactcacaaccaccaacctggtcacaacacccaacagcaggggagaacatata
ttactgttcctagtgcagactgttgccaggcagagcgttgagcactgtcagtacagacca
ccacgcatcagagaagacagaaaccgcaaggctacaaatgcagaagattctgacatgcca
gaccacgatctagaacctccccgctttgctcagctggctcttgagagggtcctgcaagac
tggaatgccctgaagtttatgatcatgtttggctctcaggagaataaagacccacttagt
gccagcagcagaattgcccacctcctacctgaagagcaggtctacttgaatcagcagagt
ggcactattcgccttgactgtttcacccactgcctcattgtcaagtgtgctcctgacatc
acttttatagacaccttgctgggtacactagtaaaagagctgcagaacaagtacactccc
ggccggagagaagaggcggtcaatgtcaccaggaggttcctgcgctctgtcgcccgggtc
ttcgtcatcctcagtgtggaaatggcctcatccaagaaaaaaaacaacttcatcccccag
cccatcgggaaatgtagacgggtattccaagcgctccttccatacgctgtggaggagctg
tgtaatgtagccgagtcgctgatcgtgccggtgcgaatggggattgcgagacccactgcg
ccgttcactttggcaagtaccagcatagatgcagtccagggcagcgaagagctcttctct
gtagaaccgctgcctccaagaccctcacctgaccagtccagcagctccagtcagacagct
gcctcttatatcatcaggaacccccagcctcgacgcagcagccagtctcagcctgtcaga
ggaagagacgaggagcatgatgacattgtgtcagcagatgtggaagaggtggaagttgta
gaaggagtagctggtgaggaagaccatcatgatgaccaagaggaacagggagaggaaaat
gcagaggcagaagggcagcatgatgagcacgacgaagatggaagcgacatggagcttgat
cttctggcagcagctgaaacggagagtgacagtgaaagtaaccacagcaaccaggataac
gctagcggccgcaggagtgtcgtcacggcagcaacagctggctccgaagcaggcgccagc
agtgtccctgccttcttttcagaggatgactcccagtcgaatgactccagtgactcggac
agcagcagcagtcagagcgacgatgtagaccaagagacttttctgttggatgagccgctg
gaaaggacaacgagcacctcccatgccaacagtgcagcccaggctcctcgctcaatgcag
tgggctgttagaaacaccccgagccaaaggaccactgggagcgctccctccagctcctca
acacctgctgcgagctccacaggcctgatatacatcgacccgaccaacctgcgtcgctcc
agtgcgatcagttccagtgccgcggcagcagctgcggctctggaggccagcaactccagc
agctatctgacgtccgccagcagcctggcccgggcctacagcatcgtcataaggcagatc
tcagacctcatgagtctgattcccaagtacaaccatctagtctactctcagtaccctgct
gctgtaaagctcacctaccaggatgctttcaacctgcaaaactatgttgaagaaaagttg
attcccacctggaactggatggtgtcaatcatggactccaccgaggctcagttacgatat
ggctctgctctgtcatccgctggagaccctggtcaccccagtcacccgctgcatgcatct
cagcactccgctcgcagagagcgcatgactgcccgggaggaggccagcctccgcacactt
gagggacgcaggagagcagctaccctgctgacagctcgccagggtatgatgtcggcacgg
ggcgacttcctgaactacgccttatcattgatgcgctcccacaatgatgagcactctgat
gtgcttcctgtgctggatgtgtgctcactgaaacacgtggcctacgttttccaggctctt
atctactggattaaggccatgaaccagcagaccacgttggacactccacaaatggacaga
aagaggaatcgagaaattttggaactgggtttggacaatgacgattctgaacacgagaac
gacgaggacaccaatcagagttcaactctgcaggacaaggatgaggacccagtcccagct
gaaactggtcagatccacccctttttccgtcgctctgactccatgaccttcctgggctgc
atcccacccaacccctttgacgttccacttgctgaggccatcccactggcagaccagccc
cacctcctgcagcctaatgccaggaaggaggatctgtttggtcgcccctctcagggcttg
tactcttcctcgtacatggcaaccaaaggcctggctgagacgagcatggacaggaactgc
ctggaggtaaacatgggctcctctctaccctccccctctcagatcctgcccactaagatg
tcttactctgccaacctgaagaatgttatgagtatggaaactggccagcggagcactgag
aaccagtcactagcagagcaggagttggaggcctcaaaaccaggcccttcgccccatgac
cttgctgcccagttgaagagcagcctacttgctgagattggcctcactgaaagtgatgga
ccccctctgccatcgttcagacctcactgtagtttcatggggatgatgatctcacatgac
atgctactcggccgctggcgtctatctctagagctgtttggtcgcgtcttcatggaggat
gtcggagccgagcctggatcggtacatttttatatattatttattgaaatcctcacagag
ctaggcggctttgaggtaaaggaatccaagttccgtcgagagatggaaaagctgaggaac
ctgcagtcccgcgacctggccctggaggtggaccgggatcgagaccagctaatacaacag
accatgcgtcagcttaacacgcacttcggcaggcgctgcacaaccacacccatggctgtg
cacagggtgaaggtcacctttaaagatgagccgggcgagggcagcggtgtggcccgcagt
ttctacacagccatcgccctggccctcctctccaacgacaagctgcccaatctggactgt
gttcagagtgtcagcaagggcatgcaggccagcagtacgtgtcatcacgattacaattca
aatctaatgcagcgcttgagaaacagagaccgagaaagagagaggagaagcggcgggctt
cgagcgggatctcgtagagacagagacagagattccaggaggcagctgtccatagacacc
cggcctttcagaccttcgtcagagggaaaccccagcgatgagcctgaccctctgcctgca
cacagacaagccctgggtgaaaggctctacccacgtgttcatgccatgcagccggcgttt
gccagtaaaatcacaggcatgttgctcgagttgtcccctgcccagctgctgctgctgctg
gctagtgaggattctctccgagccagggtggaggaggcaatggagcttctcattgcacat
ggaagggaaaatggtgccgacagcatattggacctgggtcttctagaggctccagagaaa
gcacaacagctggaaaaccgtaagcgccatggttcaacccgcagtgtggtcgatatggag
ctggacgaccccgacgatggggacgacaatgctcctctcttctaccagcctggcaaaaga
ggcttctactctcctcggcccggcaagaacaccgaagcccggttgaactgcttccgtaac
atcggcagaatactggggttatgtctgcttcaaaatgaactctgtccaatcacattgaac
cgacatgtcatcaaagtgctgcttgggagaaaggtgaactggcatgactttgcattcttc
gacccggtcatgtatgagagcctgcggcagctgattcgacattctcaggctggtgaagca
gacgcagtatttgctgccatggatcttgccttcgcgattgacctctgcaaagaggaaggt
gctggacaggtggagcttctatctggtggggtcaacatgccagtaactccactgaatgtg
tatgagtatgtgaggaagtatgctgagcacagaatgctggtggtggccgagcagccgctc
catgcaatgaggaagggtttgctggatgtgcttcctaaaaacgccctggaggacctgacg
gctgaggacttcaggctactggtgaacggctgtggagaagtcaatgtccagatgctcatt
agcttcacgtcctttaatgatgaatctggggaaaatgcagacaaactactgcagtttaaa
cgctggttttggtccatagtggaaaagatgagcatgactgagaggcaggatctggtgtac
ttctggacctccagcccttccctgccagccagcgaggaaggcttccagccgatgccctcc
atcaccatccggcctccagatgaccaacacctccccacagccaacacctgcatctcacgt
ctctacgtgccactatattcttcaaaacagatactcaaacagaaactcctgctagccatt
aagaccaagaactttggttttgtttag
DBGET
integrated database retrieval system
