Pseudoliparis swirei (Mariana hadal snailfish): 130212685
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Entry
130212685 CDS
T09868
Symbol
snx27b
Name
(RefSeq) sorting nexin-27b
KO
K17936
sorting nexin-27
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130212685 (snx27b)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
130212685 (snx27b)
Membrane trafficking [BR:
pswi04131
]
Protein recycling
Others
Others
130212685 (snx27b)
Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
130212685 (snx27b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PX
PDZ
RA
PDZ_6
SNX17-27-31_F1_FERM
RA_2
SNX17-31_F2_FERM
SNX17_FERM_C
PDZ_2
Motif
Other DBs
NCBI-GeneID:
130212685
NCBI-ProteinID:
XP_056299781
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All DBs
Position
22:13216987..13230279
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AA seq
565 aa
AA seq
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MADVEGQGRCSSVPPLPHPSSRNDSGCGNVTPGTGASCQTTTTVTSGPRLVRIVKSDSGY
GFNVRGQVSEGGQLRSINGELYPPLQHVSAVLPGGAADRASISKGDRILEVNGVNVEGAT
HKQVVDLIRAGERELVLAVLSVPPQETDCLDPGDDISAQSCCDYSEKQAVPISVPSYKHT
ELNQEKFVVYNVYMAGRQLCSKRYREFVILHQNLKREFANFTFPKLPGKWPFSLSEQQLD
ARRRGLEEYLEKVCSVRVIGESDIMQEFLSESDENFNGVSDVELRIAMPDKTTLTVGVCK
NSTTDQVYQAVVMKLGMDSVTASYFALFEVINHTFVRKLAPNEFPHKLYVQNYTSAIPGT
CLTLRKWLFTTEEEILLNDNQLAINYFFHQAVDDVKKGLIKAEQKSYQLQKLAEQKKLSM
YLSLLRDCEGYNEIIFPHCACDSPRKKATSSTHHECTKASMLFQNQVIAFEWGEMQRWDT
DEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEVEEEATDKDNKNC
SKDEYFPVAEAQKGWRHLGREIVTS
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtcgagggacaaggaagatgttcatcggtccctccgttgcctcacccttct
tctcgcaacgactccggttgcggtaacgttacaccgggcaccggagccagctgccagacg
acaactaccgttacttcaggcccgcggctggtccggatagtgaagtctgactcgggctat
gggttcaatgtccggggacaagtcagtgaaggcggacaactgcgaagcattaacggggag
ctgtaccctccgctgcagcatgtcagcgcggtcctaccgggaggcgccgccgacagagcc
agtatttccaagggggacaggattctcgaggttaatggtgtgaatgtagagggagcgacc
cacaagcaggtggtggacctgatccgggctggagagagggagctggtgctggccgtgctg
tccgtcccaccccaggagaccgactgcttggatcccggagatgacatttcagcccagtcc
tgctgtgactactccgaaaagcaggccgtccccatttctgtgccgagctacaaacacact
gagctcaaccaggagaagtttgtggtatataatgtgtacatggcaggaaggcagctgtgc
tccaagcgttaccgtgagtttgtgatcctacaccaaaacctcaagagggagtttgccaac
tttacgttccccaagctgcctgggaaatggcccttttccctgtcagagcagcagctggac
gcacggcgcagaggccttgaagaatacctggagaaagtgtgctctgtaagagtaattgga
gaaagtgacatcatgcaggagttcctgtctgaatccgatgagaactttaatggcgtgtca
gacgtggagttgagaatagccatgcccgacaaaaccacgctcaccgtcggagtttgtaaa
aactctaccacagatcaggtctaccaggctgtggtaatgaagctgggaatggacagtgtc
acagccagctattttgctctatttgaggtcatcaaccacacctttgtgcgtaagcttgcc
cccaacgagttcccccacaaactgtatgtacaaaactatacctcagccatcccaggaacc
tgcctcactctgcgcaagtggctcttcactacagaagaggagattctgctcaatgacaac
cagcttgctatcaactacttcttccaccaggctgtagatgatgtgaagaaaggcctcatc
aaagcggagcagaagtcctaccagctgcaaaagctggctgagcagaagaagctgtccatg
tatctgagtctgttgagggactgcgagggctacaatgagatcatattcccacactgtgcc
tgcgactctccccgtaaaaaggctaccagcagcacccatcatgagtgtactaaagcctcc
atgttgttccagaaccaggtaattgcattcgaatggggggagatgcagaggtgggacacg
gatgaagagggcatggccttctgctttgaatatgcacgaggagagaagaaaccacgctgg
gtcaagatatttacaccctattttaactacatgcatgagtgcttcgagagagtcttctgt
gagctgaagtggaggaaagaggtggaagaggaggctacagacaaggacaataagaactgc
agtaaagatgaatattttccagttgctgaggcacagaaaggatggaggcacctaggaagg
gagatcgttacctcttaa
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