Pseudoliparis swirei (Mariana hadal snailfish): 130212736
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Entry
130212736 CDS
T09868
Symbol
sntb1
Name
(RefSeq) beta-1-syntrophin
KO
K24064
beta-syntrophin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130212736 (sntb1)
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Gene cluster
GFIT
Motif
Pfam:
Syntrophin_4th
PH_17
PDZ
PH
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
130212736
NCBI-ProteinID:
XP_056299873
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Position
22:complement(15961038..15996396)
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AA seq
551 aa
AA seq
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MAVVITTGVSGASGVPKSGFLEVSVREQWHKVLVNLNEEALTLSCEEGYGNESVDSNGVS
NGSYLDNNNANSNNGPQTVRTAFTDLPDRVPESIANRKRCVKVSKQEVGGLGISIKGGKE
NKMPILISKIFKGLAADQTQALYVGDAILSVNSVNLRDATHDEAVQALKRAGKEVTLEVK
YMREATPYVKKGSPVSEIGWETPPPESPRLDCPTIISSSSSFSTFDPASSPTQPSLSPQG
DRRRIPLKMCCVTRAMTTPDPENRQLELHSPDVRHTVVLRCPDQLSALSWFSAMHSVTSK
LAQRALAEVIQSTARTGVAGSKEIRHLGWLAGKTESEKQSWKPVLMVVTAKDLLLYESLP
RGKEAWQSPAHTYPLLATRLVHSGPDRGSPHSGTELFFATRTGTRLGIETHLFRAETTKD
LSLWTRHIVNGCHASAEMIKEVTTSCLYQSQECRLVIHYEQGFSVLADPKQGDGEDVEER
GAHTATRPRPLLSYPYEKLKMSSDDGVRMLFLDFGGKEGEIQLDLHSCPKPIVFILHSFL
SAKIYRLGLVA
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggtcataacgacaggagtttcaggtgcctccggagtaccaaaaagtggattt
cttgaggtttcggtgcgggagcagtggcacaaagttttggtcaacttaaacgaggaagcg
cttacgttaagctgcgaggagggctacgggaacgagagtgtcgactccaacggcgtttct
aacggatcctaccttgataacaataacgcaaactccaacaacggtccccaaactgtgcgc
actgcgttcacggacctcccggatcgagtgccggagtcgattgccaacagaaagcggtgc
gttaaggtgagcaagcaggaggtcggaggactcgggatcagcatcaaaggtgggaaggag
aataaaatgcccatcctcatcagtaagatattcaagggactcgcagcggaccagacccag
gcgctttatgtcggggacgccatcctgtccgtgaacagcgtaaacctgcgggacgcgacc
cacgacgaggctgtgcaggcgctgaaacgggccgggaaagaggtgacactggaagtgaag
tacatgcgtgaggccacaccgtatgtcaaaaagggctcccctgtgtcagagatcggctgg
gaaaccccccctcctgagtctcctcgcctcgactgcccgaccatcatctcctcttcctcc
tccttctccacatttgaccctgcgagctctcctacgcagccctccctgtccccgcagggc
gacaggaggcgcataccactcaagatgtgttgtgtaacccgagccatgaccacaccagac
cccgagaacagacaactggagctgcactcccctgacgtcaggcacaccgtggtgctgcgg
tgccccgaccaactatctgccctgtcctggttctctgccatgcactcggtcacatccaaa
ctggcacagcgggcgctggcagaggtcatccagagcacagccaggacgggggtagctggc
agcaaagaaatacgacacctggggtggctggcagggaagacagagagtgagaagcaaagc
tggaagccggtgctgatggtggtgacggccaaagacctgctgctgtatgagagtctaccg
cggggcaaggaagcctggcagagccctgcacacacgtacccacttttagcaacccgactg
gtccactcgggccctgaccgggggtcgccacactcgggcacagaactgttctttgccact
cggaccggcacacgactcggcatcgagactcacctgttccgggcagagaccaccaaggac
ctgtccctgtggaccagacacatcgtcaacgggtgtcacgcctcagctgagatgatcaaa
gaagtcacgacaagttgtctgtaccagagtcaggagtgtcggctggtgattcactacgag
cagggcttctccgtgctggctgaccccaaacagggagatggggaagatgtggaggagaga
ggagctcacacagcgaccaggccgcggccgctgctgtcctacccctacgagaagctgaag
atgtcctcggatgacggagtgcgcatgctcttccttgactttggaggaaaggagggggag
attcaactggacctccactcgtgtccgaagccgatcgtcttcatcctccactccttcctc
tctgctaagatctaccgcctgggtctcgtggcctga
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