Pseudoliparis swirei (Mariana hadal snailfish): 130212806
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Entry
130212806 CDS
T09868
Symbol
u2af2a
Name
(RefSeq) U2 small nuclear RNA auxiliary factor 2a isoform X1
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130212806 (u2af2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pswi03041
]
130212806 (u2af2a)
Spliceosome [BR:
pswi03041
]
Complex A
U2 snRNP components
U2 related factors
130212806 (u2af2a)
Complex B
130212806 (u2af2a)
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
130212806
NCBI-ProteinID:
XP_056299995
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Position
22:complement(14313788..14322146)
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AA seq
503 aa
AA seq
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MSDFDEFERQLTENKQGVNKRYVPAAERDKENRHHRRSSSRSRSRERKRRSRDRDRRSKD
RRGDSKDERRHRRTLAVESKSLPEPPNLGSPAAPFPQETAPSRSPHREKKKNKVKKYWDV
PPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPSPVPVVGSQMTRQARRLYVG
NIPFGITEESMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAF
DGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGTQPINGVVSTVVPDSAHKLFIGGLPN
YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDK
KLLVQRASVGSKNATLTSINQTPVTLQVPGMNSSVTQMGGLPTEVLCLMNMVAPEELLDD
EEYEEIVEDVKDECSKYGQVKSIEIPRPVDGLEVPGTGKIFVEFMSVFDSQKAMQGLTGR
KFANRVVVTKYCDPDAYHRRDFW
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacttcgacgaattcgaaagacagctcactgaaaacaaacaaggcgtaaataag
cgctatgttcctgcagctgaaagggacaaagaaaaccgtcaccaccgtcggtcctcctcc
cgcagccgtagcagagagagaaaaaggaggagcagagacagggacagacgcagcaaggac
cgtcgtggtgacagtaaggatgaacgcagacacagacgcacgcttgcggttgagagcaag
tccctcccagaacccccaaacctgggctcaccagcagcccctttcccccaggaaactgct
ccaagtcgctcaccacaccgtgagaagaagaagaacaaggtgaagaagtactgggatgtc
cctccacctgggtttgaacacatcactcccatgcagtacaaagccatgcaagctgcagga
cagatcccagccacagccctgctgccgaccatgactccagatggcttggctgttactccc
agccccgtacctgtagtgggcagccagatgacccggcaggcccgccggctctacgttggc
aacataccctttggtatcacagaggagtcaatgatggacttcttcaatgcccagatgcgt
ttgggtggtcttactcaggcccctggaaaccctgtccttgcagtacaaataaaccaggat
aagaattttgcctttcttgagttccgttcagtggacgaaacaacacaggcaatggccttt
gatggtataatctttcaaggccagagtctcaagattcgtcgtccccatgattaccagccc
ttgccgggcatgagcgagaaccccagtgtctatgtgcctggtacacagccaattaatggt
gtagtgtctactgtggtgcctgactcggctcacaagctcttcattgggggcttgcccaac
tacctgaatgacgaccaggtgaaggaactcttgacgtcatttgggcctctgaaggctttc
aacttggtaaaggacagtgctactggcttatctaaaggatatgccttttgtgaatatgtg
gatgtcaacctgaatgaccaggctattgcagggctgaatggcatgcagctgggagacaag
aagctcctggtgcagagagccagtgtgggatccaagaacgccactctgacgagtatcaat
cagacccccgtgacgctgcaggtgccgggtatgaacagctcagtgactcaaatgggtggc
ctgcccactgaggtgctgtgtctgatgaacatggtggcaccagaagagctgctggatgat
gaagaatatgaggagattgtagaggatgtgaaggacgagtgcagcaagtacggccaagtc
aagagcattgagatcccgcgacctgtggacggcctggaggtgcctggcactggcaagatc
tttgtggagttcatgtccgtgtttgactcccagaaggcgatgcagggtctgacaggaaga
aagtttgccaacagggtggtggtgaccaaatactgcgatccagatgcttatcaccgtcga
gacttctggtag
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