Pseudoliparis swirei (Mariana hadal snailfish): 130212824
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Entry
130212824 CDS
T09868
Symbol
npas2
Name
(RefSeq) neuronal PAS domain-containing protein 2 isoform X1
KO
K09026
neuronal PAS domain-containing protein 2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130212824 (npas2)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
130212824 (npas2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAS_11
PAS_3
HLH
PAS
bHLH_IRO3
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
130212824
NCBI-ProteinID:
XP_056300036
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All DBs
Position
3:9929377..9968330
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AA seq
869 aa
AA seq
DB search
MDNLSDFGGPCPSTRREWDTNSGVDDLMDDDDKDRAKRASRNKSEKKRRDQFNVLIKELC
TMLQGQGHPRKMDKSTILQRTIDFLQKQKDITAQNETCDVRQDWKPSFLSNEEFTQLMLE
ALDGFLVALTTDGNIIYVSDSVSSLIGHLPSDMVDQNILNFLPEREHGEVYKRLSSHMLM
TDPTAADFLDSEAHIEFCCHLARGNIDPKEPPVYEYVKFVGDFKFHNNVPTSCNGLDLAL
PRSLQSSLEEQVCLIATVRLVTPQFVKDLCNVEDPCDEFTSRHSLEWKFLFLDHRASPII
GYLPFEVLGTSGYDYYHVDDLELIAQCHKQLMQFGKGKSCYYRFLTKGQQWIWLQTHYYI
TYHQWNSKPEFIVCTHSVVSYAEVRAERRRAFGLEEPSPPEIAPSSVKAQELYLDICSTL
DPPQDRNSGARSVSSHSSRKSSHTAMSDSASPNSYTEACTPSWQSASIGTEKTSARLQPS
SSKNLAQRQNSFDLVPQLSLPLSPTCSKHSTMQQQQQQQQQQQQQQQQPMDELQQPQLCV
MNQLKEQLEERTRILQADIKTQQQELHDIKEKLQLANLQMLLQPPIQNDFGQAQQQQQQQ
PSQQNQGGLTRQHSGHSKPSSCGAHNSSPHLVLRANSSPSTQQVQQRIARSGPAQSVSVP
VQANTNVTMPFYSNPMMFSQTNTRSLQDVNQRRTDGEFNQDGQLRMLLNQPMQALVPANS
VTSQPSQCTTGISQTIYTLEQQIIAPSFSMQQVNCNAVLVPSPVFTSPIMIPHNSFIANQ
SPAAYQTQPQASQHSLQLQQPQQFFQMAQGLLHGGSTPAFLHTTNVPQQSTVGYIQQQQL
PQAQQQQRQYQHSQNQTGSVTDFRNLLTR
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggacaacctttctgacttcgggggtccctgtccatccacccgcagggaatgggacacc
aacagcggcgtggacgatttaatggatgacgatgataaagacagagcaaaaagggcttct
cggaacaaatcggaaaagaaaagaagagaccaattcaatgtgctcatcaaggagctatgc
accatgctgcagggtcaaggccatccgcgcaagatggacaagtccaccatactgcagaga
actattgacttcttgcagaaacagaaagacatcactgcgcagaacgaaacgtgcgatgtg
aggcaggactggaagccctcattccttagtaatgaggagttcactcagctaatgctggag
gccctcgatggtttcctggtggcactaacgacagatggcaacatcatatacgtatctgac
agcgtgtcttcactcattggccatttaccgtcagatatggtggaccaaaatatcttgaat
ttccttccggagcgggaacacggggaggtgtataagcggctatcatcccacatgctgatg
actgaccccactgctgctgacttccttgacagcgaggcacatattgaattttgctgtcat
ctggccagaggtaacattgacccaaaggaaccgcctgtgtatgagtacgtcaagtttgtg
ggagatttcaagtttcataacaatgtgcctacatcttgtaacgggctggatttggcgtta
ccaagaagccttcagtcatctctagaggagcaggtgtgcctcattgctactgtacgatta
gtcacgccacagtttgtaaaggatttgtgtaatgtggaagatccctgtgatgagttcaca
tccagacacagccttgaatggaagttcctgtttttagatcacagagcgtcaccgatcatt
ggatatttaccgttcgaagttcttggaacttctggctatgattactatcacgtggatgac
ttggagcttatagctcagtgtcataagcagctaatgcaatttggaaagggtaaatcctgc
tactatcgcttcctgaccaaagggcagcagtggatttggttgcagactcactattacatc
acttaccaccagtggaactccaagcccgagttcatcgtctgcactcacagcgttgtcagt
tatgctgaggtgcgagctgagaggaggagagcgtttggcttggaggagccgtctccaccc
gagatcgctccctcgtccgtgaaggctcaggagctgtacttggacatctgctccacactg
gaccctccgcaggatagaaacagcggcgcacgttcggtatcgtcccacagctcccggaag
tcctcccacacggccatgtcggactctgcatcacctaactcctacacagaagcctgcacg
ccatcatggcagtctgcttccattgggacagagaagacctctgccagactacaacccagc
agttcaaagaatttggcacaaagacaaaattcctttgacctcgttccccaactgagcctc
cccctttctcccacctgcagcaagcactccacaatgcagcagcaacaacaacagcaacag
caacaacaacagcagcagcagcagcccatggatgagctgcagcagccccagctctgtgta
atgaaccagctgaaggagcagctggaggagaggacgcgcattctgcaagctgacattaag
acgcagcagcaggagctgcacgacattaaggagaagcttcaacttgctaatctccagatg
ttgttacagccgcctatccaaaatgactttggccaggcccagcagcagcagcagcagcaa
ccctcccagcagaaccagggagggttgaccaggcagcactcaggccactctaaaccatcg
tcctgcggggcccacaattcatcccctcacttagtcctgagagcgaacagctcaccctca
acacagcaggtccagcagaggattgcacggagcgggccggctcagtcggtgagcgtgccc
gtgcaggcgaacacgaacgtcacgatgccgttctacagcaaccccatgatgttctctcag
accaacaccaggtctctgcaggatgtgaaccaaagacgcacagacggcgagttcaaccaa
gatggacaactacgcatgctcctcaaccagccgatgcaggcgctggttcccgctaacagt
gtcacctcgcagccttcccagtgcaccacgggcatctcccaaaccatatacaccttggag
cagcagatcatcgccccgtcattctccatgcaacaggtcaactgcaacgccgtcctcgtc
ccctccccggtcttcacgtcccccataatgatcccacacaacagtttcatcgcaaaccag
tccccggcggcctaccagactcagcctcaggcctctcagcactccctgcagctccagcag
ccccagcagttctttcagatggctcaaggacttctacacggtggatctactccagccttc
ctacacaccactaacgtcccacagcaaagcactgtgggatacatccagcagcagcagctg
ccgcaggcgcagcagcaacaaaggcaataccaacattcccaaaaccagactggcagtgtt
acagacttccgaaatctgctgactcggtag
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