Pseudoliparis swirei (Mariana hadal snailfish): 130212857
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Entry
130212857 CDS
T09868
Symbol
arid1aa
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130212857 (arid1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130212857 (arid1aa)
03021 Transcription machinery [BR:
pswi03021
]
130212857 (arid1aa)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130212857 (arid1aa)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Helix-turn-helix
ARID
130212857 (arid1aa)
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130212857 (arid1aa)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130212857 (arid1aa)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
130212857
NCBI-ProteinID:
XP_056300083
LinkDB
All DBs
Position
22:9461534..9476750
Genome browser
AA seq
2316 aa
AA seq
DB search
MAAQVATLNTSPPSELKKPDRDSKEESVPGDKQSDKKQPGLDSGSPGRGDLQDGTDGGNA
GGGGEPEMKNGNGNPPRANNNNQNDSVGPEGNNHPGLVHHHGTAFPPSSYGYSQHYSRAP
FHQHGGQQSPGMAAAGPVVQSSNMMDPYQPNSHEHGFSNHQFNNYNPFPNRTPYPGQAYA
VNSPRSSQAPTAGGQPANAKQQPPPAAGGPAAMAGSYSNQRYNIGNPQPTSTPTLNKLLT
SPSSTRGYPNYPSNDYGSQDGASKGPADMGSSGLYGGSNPGWQQRSHHPSPLSPGSAGQP
LVRNQPPDPMDPMGKMRGQPYGAGSPYSQQSQQGPPTAPQQGLGYPGQGYGPAGPQRFPG
GMQGRSPGSMGSMPYGPQMGSYGQQGPGGYGSQGQAPYYSQSGQTPHSSQQQTPYSQAPP
GQPGGQTPYPGQTHPPSTSAPHTQGGQPYQQPHIPPQSQGPLPGPSQGSPQSQPPYSQAS
APQSGQSLYAQQQGPPNQAPQQPSSQEPPGSQGQSNYPGSTQGPQQPPPQQQQAQSQPPQ
QPPGHSQHPQGQPAAYPQQNPQKNPQKNPQQQQQQQQQQQAQQSPYQRFPPPQQQEVSQD
SFQSNTPPSTQPKSGPEDSQGRPSSLPDLSGSIDDLPTGAEGALSPGVNTSGVSSSQGEQ
SNQAQSPFSPHTSPHLPGIRGPSPSPAGSPAGASTPRTGPLSPANMPVTQMPPRPSSVQS
DGSLHPAMSQSPMAQDRGFMQRNPQMPPYGSPQSASALSPRQSSGGQMHPAMGPYQQNNS
MGGYGQQGGQYGPQGYPRQPGYGNMPNANYTGPGIGPINSMGGQGGGPPYAGIPPGRMPP
NQMGARPYGPNMGPNMGPNMAPNMVTMPPQIGSGMGPPPGMNRKPQDPTAMQHPATNSMH
NRMPGFPNMSPGMMGAGPPYGPPMNNMPGMMNPQGGSPYPIGPNMANNSSGMAPSPEVNN
KMSNKVDGSGTPKPEPKPKKSNSSTTTNEKITRLYELGPEPERKMWVDRYLAFIDEKALG
LTNLPAVGRKPLDLFRLYMSVKEIGSMAQVSKNKKWRDLATSLNVGTSSSAASSLKKQYI
QCLYAFECKIERGEDPPPEILTDNKKNQPAKVQPPSPASLSSTAGSGSLQGPQTPQSTSS
SMAEGGDVKPPTPASTPHTQMPPMPPGSRSSVNLQDPFSEGSDPAFPRKNMTPNSAYQPG
MNTPDIQGRMGTYEPTKDPFGNMRKVGEHFLPASQGPNSGAGDQQQPPQQQPPQQQPPFN
RGPPGAMGTMPMGPRQQFPYGPGYERRPEQGVGPEGSMGAGAPQPNPMIPANADAGIYSP
NRFPTQQPRHDSYGNQYPGQGTPPTGSYPNQQPGMYPQQQQQQQQSYKRPVEGGYPPSKR
HETEYSGPFHGGQQPPPPPPPPPPPPPQQQGCAPAPSSGQPESYNQYSGSGPFPGSDRRP
PGPGNQFPFPFGRERMPVPTGPNAQPNMPPQMMQSGPEGPQGGMWQGPRDMNYQNYPNRQ
GGPGGPPQGPGYPGMNRSEEMMSPEQRMNHDGQWGGQMGPRQPTYGPAGPGQPMPHAVQS
TYQSLQGVQNHIPQVSSPASMPRPMDSRTSPNKSPYMHGVMKMQKAGPPVPASHIVPSPM
QSPLIRRDMPFPPGSIEASHPVLKQRRKLTMKEIGTPEAWRVMMSLKSGLLAESTWALDT
INILLYDDNSVSTFELNMLPGLLELVVEYFRRCLIEIFGILREYEVGDPGQRTLLDPDAL
KKDWDSTEEDKLWADDMEQEEGDDDEEEEEQETEAPARIKEEEEQAQCSKSRGQDEKTED
EERKSQGSSSDQTGSLQPVSAHERPKQASKFDKFPLKVVRKKDPFATGHSNNHGKLQEFD
SGLLHWSAGGGDSTDHIQTHFEPRKDFVEPRERIYVPSSLLKRRVPEEVFQENIFPTEGE
KKKNQDEEETSLSEKASPSLSGEEERKTDSETKTADAADDSQQEGDRPGPALDGVFTQRA
QQTGVILEDEPHSKDERPLIALANWQDSLARRCICVSNIVRSLSFVPGNDHEMSKHPGLL
LLLGRLILLHHRHPERKQAPLTYEKDEDSDEGMGQRDEWWWDCLELLRENTLVTLANISG
QLDLSVYPESICLPLLEGLLHWAVCPSAEAQDPFPTVGPHSSLSPQRLVLETLSKLSIQD
NNVDLILATPPFSRLEKLYGNLVRLIGDRKVAVCREMAVVLLANLAQGDPMAARGIAVQK
GSVGNLMGFLEDSLAATQLQQSQSSLLHLQGMHFEPTSPDMMRRAARALHALAKVEDNLS
EFTLQESRLLDLSVSPLINSLVSHVICDVLFLIGQS
NT seq
6951 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccactcttaacactagcccgccttccgaactcaaaaagcccgat
cgagactccaaggaggagtcggtaccgggggacaagcagtcagacaaaaagcagccgggc
ttggacagcggatcgccgggccggggggatctgcaggacgggaccgacggtggaaatgca
gggggaggaggggaacctgagatgaagaacgggaatgggaacccgcccagggctaacaat
aataaccagaatgactccgtcggaccggaggggaataaccatcccggtttggtgcatcac
cacggcaccgcgtttcctccctcttcctacggatacagtcagcactacagtcgggcccct
tttcatcaacatggcggacaacaaagccctggcatggcagctgctggtccggtcgtgcag
tcgagcaatatgatggacccgtatcaacccaattcccacgagcatggcttttcaaaccac
cagtttaacaactacaacccgttcccgaacaggaccccctaccccggccaagcgtacgcc
gtgaactcccctcgcagcagccaggcgccgacagctggggggcagccagctaacgcgaag
cagcagccgccgccagcagcgggaggacccgcggcgatggccggctcttacagtaaccag
agatataacattgggaaccctcagcctacatccacgccgaccctcaacaagctcctgacc
tcccccagctcgacgcggggatatccgaactacccgtctaacgactatggcagccaggac
ggcgcgagtaagggaccagcagacatgggcagcagcgggctgtacggggggagcaacccg
ggctggcaacaaagaagccatcacccgtcacctttgagcccgggaagtgccgggcagcca
ctagttagaaaccagccaccagatcctatggacccaatgggaaaaatgaggggccaacca
tacggagcaggcagtccatacagtcagcagtcgcagcaggggcctcccacagctccacaa
caggggctcggttaccctggccagggttatggccctgcaggtcctcagcgattcccaggg
ggaatgcaaggacggtcccctggcagcatgggtagcatgccgtatggtccacagatggga
tcttatggacagcaaggaccaggaggctatggctctcagggccaggcaccatattacagc
cagtctggccagactcctcactcaagccagcagcaaactccatactcccaggccccacca
ggacaaccgggtggccagacaccgtacccagggcaaacccaccctccgtcgacttctgcg
ccgcacacccagggaggacaaccctatcagcagccccatattcccccacagtctcagggg
ccactgccgggcccatcccaagggtctccacagtctcagcccccatactcccaagcctca
gccccgcaatctggccaatccctctacgcccagcagcagggtcctcccaatcaggctccg
cagcagccaagttcccaggaaccccccggatcacagggccagtccaactacccaggatcc
acacaggggcctcagcagccccccccacagcaacaacaggcacagtctcagcctccacag
caaccaccgggacacagccaacacccacaaggccagcctgcagcatacccgcagcagaac
ccgcagaagaacccgcagaagaacccgcagcagcagcagcagcagcagcagcagcagcaa
gcacaacagtcaccttatcagcgctttcctccaccacaacagcaggaggtatcgcaggac
tcatttcagtcaaacacccctccatccactcagcctaagtctggcccagaggacagtcaa
ggccgcccctccagccttccggacctgtcagggtccattgatgacctgcccacaggcgca
gagggcgccctgagtcctggcgtgaacacgtcgggtgtgtcgagcagccagggggagcag
agtaaccaggctcagtcgcccttctctccccacacgtctccccacctgccaggcatccga
gggccctcgccgtctccagctggctctcctgccggcgccagcacaccccgcacgggacca
ctgtcgcccgccaacatgccagtgacccagatgcctccgaggccatcaagtgtgcagtcg
gatgggagtctacacccggcaatgagtcagtctcctatggcccaggacagagggttcatg
cagagaaaccctcagatgcccccttatggctccccccagtcagcctcggcactgtcgcca
cgccagtcctcagggggacagatgcatcccgcgatgggcccctatcagcagaacaactca
atggggggctatggacaacagggaggacaatatggccctcaaggttatccccggcaacct
ggctatggcaacatgcccaatgcaaactacactgggccaggcataggcccaattaactcc
atgggaggacagggtgggggaccgccatatgctggcattcccccaggaaggatgcctcct
aatcaaatgggagcacgcccctatggccccaatatgggtccgaatatgggccccaacatg
gctccgaacatggttaccatgccaccccagataggctcaggaatgggtcctcctccaggc
atgaacagaaagccccaggaccccactgccatgcagcatcctgccaccaactccatgcac
aacaggatgcctggtttccccaacatgtctccaggcatgatgggcgccggcccaccctat
ggcccccccatgaacaacatgcctggaatgatgaaccctcaaggtggatcaccttatcct
attggtccgaacatggccaataactcaagtggtatggcccccagtccagaggtgaacaac
aagatgagtaacaaagtagatgggagtggaacgccaaagccagagcctaaaccgaagaag
tccaactcttccaccacaaccaatgaaaagataacacggttgtatgagttgggaccagaa
ccggaaaggaagatgtgggtggaccgatatttggcctttattgacgagaaagccttgggc
ttgaccaacctgcctgctgtaggacgcaaacccctcgatcttttccggctctatatgtca
gtcaaagagatcggaagcatggcgcaggtgagtaagaataagaagtggcgtgatctggcc
acttccctgaatgtgggtacatccagcagcgctgccagttctttgaagaaacagtacatc
cagtgtctctacgcctttgagtgcaaaattgagcgcggtgaggaccctcctcctgagatt
ttaacggacaacaaaaagaaccaaccggccaaggtccagccaccctctccagcgtccctg
tcctccacagccgggtcaggctctttgcagggtcctcagacaccccagtccaccagcagc
tccatggcagaggggggggatgtaaaacctcccaccccagcctccactcctcatacccag
atgccccccatgccacctgggtccaggagcagtgttaacctgcaggaccccttctctgaa
ggaagtgaccctgcgttccctcggaagaacatgacgcccaactcggcctaccagccaggc
atgaacacgccagacatacaagggcgcatgggcacctacgagcccaccaaggaccccttt
ggcaacatgcggaaagtcggggagcactttctacctgctagccaaggccctaacagcggg
gcgggggaccagcagcagcccccacagcagcagccaccacagcagcagcctccattcaac
agaggaccgcctggggccatgggcacaatgccaatggggcccagacagcagtttccctat
ggaccaggctacgaaaggagaccggagcaaggagtgggcccagagggcagcatgggggcc
ggtgcccctcagccaaacccgatgatacctgccaacgccgacgctgggatctattcgcca
aatcgcttcccaacacagcagccacggcatgattcctatggtaatcagtatcctggacag
ggaacgccccctacaggctcctatccaaatcagcagcctggaatgtacccacaacaacaa
caacagcaacaacagagttacaagcgtcctgtggaaggaggttatcctccatctaaacgt
catgagactgagtacagtgggcccttccatggtggacaacaaccgccgccgccgccgccg
ccaccaccgccgccaccgccgcagcagcaaggatgcgccccggcaccctcttcaggacag
ccggagtcgtacaatcagtacagcggcagtgggcccttccctggctctgatcgccgtcca
cccggcccaggcaatcagtttccttttcccttcggtcgtgagcgtatgccggtaccaacg
gggcccaacgctcagcccaacatgccccctcagatgatgcagtcaggtcccgagggtcct
cagggaggtatgtggcaggggccgcgagacatgaactatcagaactaccctaaccggcag
ggtggccccgggggcccaccccaaggacctggctacccgggcatgaaccgctcagaggag
atgatgtcgccagaacagcgcatgaatcacgatggtcagtgggggggtcagatgggcccg
cggcagcctacttatgggccagctgggcctgggcaacctatgcctcatgcagtacagtcc
acctaccagtcccttcagggtgtgcagaaccacattccacaggtgtccagcccggcgtcc
atgccccgccccatggatagcagaacatcaccgaataaatctccctatatgcacggagta
atgaagatgcagaaggccggccctccagtgcctgcatctcacatagtgccctctccgatg
cagtcgcctctcataaggcgagacatgccttttcccccaggctcgatagaagcgtcccat
cctgtcctgaaacaacgccggaaactcaccatgaaagagatcggaaccccggaggcctgg
agagtcatgatgtcattaaagtcggggttattggctgagagcacgtgggccttagatacc
atcaatatcctcctgtatgatgacaacagtgtttccacctttgagctcaacatgttgcct
ggcctactagagttggtggttgagtatttcagacgctgcctcattgaaatctttggcatt
ctgcgggagtatgaggtgggagaccctggccagaggacactgctggatcctgatgccttg
aaaaaagactgggacagcacggaggaagacaaactgtgggccgatgacatggaacaagag
gaaggagatgacgacgaagaagaggaggaacaagaaacggaggcgccagctcgtataaaa
gaggaggaagagcaagcgcagtgctccaagtctcggggtcaagatgagaagacggaggac
gaggagaggaagagccagggttcgtcctctgatcagacgggctcattgcaacccgtatct
gcccacgagagacccaaacaggccagcaagtttgacaagtttcccctcaaagtggtacgg
aagaaagacccatttgcgaccggccattccaataatcatggcaaactgcaagagttcgac
agcgggttacttcattggagcgctggaggtggagactcaaccgaccacatccagacccac
tttgaaccgcgcaaagacttcgtggaaccccgagaacggatatacgtgccctcaagtctg
ctaaagcggcgagtcccagaagaagtgtttcaggaaaatatttttccaactgagggagag
aaaaagaagaatcaagatgaagaagagacatccctctcagagaaggccagcccctccctc
agcggcgaggaggagaggaaaacggattccgagacaaagacggcggatgcagccgatgac
agccagcaggagggcgacagacccggtcctgccctcgacggtgtcttcacccagcgggcg
cagcagactggcgtcatcctggaggacgagcctcacagcaaagacgaacggccgctcatt
gcactggccaactggcaggattctttagcccgccgctgcatttgtgtctccaacattgtc
cgtagcctctcctttgtgccaggcaatgaccacgagatgtccaaacatccagggctgctg
ctgctgctgggacgcctgatcctgctgcaccacaggcaccccgagcgcaaacaagcgcca
ctcacctacgagaaagatgaggattcagacgagggaatgggccaaagggatgagtggtgg
tgggactgcttggagctcctgagggagaacacactggttacgttggcgaacatctcgggc
caactggacctctccgtctaccccgagagcatatgcttgcctcttctggaaggtcttctc
cactgggctgtctgcccatcagcagaggcccaggaccccttccccaccgtcggcccccac
agttctttgtcgcctcagagactggtcctggagacactaagcaaactaagcatccaagac
aacaatgtggacctcatcttggccactccgccattcagtcggttggagaagctatacggg
aacctggtgcggctgattggagaccggaaggttgcggtctgcagggagatggcggtggtc
ctgctggccaacctggcccagggtgatccgatggcggcccgaggaatcgctgttcagaaa
ggaagtgtgggcaacttgatgggcttcttggaggacagcctggctgccacacagcttcag
cagagccagagctctctactccacctacaggggatgcacttcgagcccacaagcccggac
atgatgcggcgagcggcccgggctctgcacgccttagccaaggtggaggacaacctctcg
gagttcacactacaagagtcccgactccttgacctttcagtgtctcccctcattaactcg
ctggtttctcatgttatctgtgatgtactttttttgattggccagtcatga
DBGET
integrated database retrieval system
