Pseudoliparis swirei (Mariana hadal snailfish): 130212897
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Entry
130212897 CDS
T09868
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130212897 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130212897 (smarcc1a)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130212897 (smarcc1a)
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130212897 (smarcc1a)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130212897 (smarcc1a)
PBAF complex
130212897 (smarcc1a)
GBAF(ncBAF) complex
130212897 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
130212897
NCBI-ProteinID:
XP_056300159
LinkDB
All DBs
Position
22:complement(3697865..3716997)
Genome browser
AA seq
1109 aa
AA seq
DB search
MATAATTAGGTGSGGPATGPVGGGTAVGRKKDGGPSTKFWESSETVSQFETVRQWIGKHY
KKSVQNDSPSSKSLAGLVVQLLQFQEDTFGRRVNNSALTKLPAKCFLDFKAAGALCHILG
SVYKFKSEQGWRRFDLQNPSRMDRNVEMFINVEKNLVQNNCLTRPTVFLSPDIEQKQASK
LKDIIKRHQGSITDDKSKATHHIYPTPSQQEEEEWLRPVMRKDKQVLVHWGLSPDSYDTW
VSVSEVDGEVEDPPDTDRPWKVHAKWVLDTDAFNEWMNEEDYEVDDNKKPVSFRQKIFPK
EEESSRTPDRKERKANSASSKKRRRSPSPPSTPAESRKKGGKKGNQGPHWKRRGHRGEEE
DTEEDITKDLDDSSAGASIEEGSVSKNANSKKDSENTPVKGGNVADMDDMEDDSVLSGGK
DDEEQSKAEVNRLMDNSEDTVTEQTHHIIIPSYGAWFDYNCIHEIERRALPEFYNGKNKS
KTPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDS
ESRPLPMGPPPTPHFTVLADTPSGLMPLNHRPPPIPPQQPMPNFADKGKEKSIDLQNFGL
RTDLYKKNFKGKLVNSTRDWTEQETLLLLEALEMFKDDWNKVSEHIGSRTQDECILHFLR
LPIEDPYMESTEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAARAALEEFS
RVREEVPTELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPERTEAPEAEKMDT
DTDSQQADKAELKDEAEKPSESAEKSDKTEAVDKVKKEGSEREEESEEGGDAKTIPAGND
KEKEESMETSPSEKEKQEKAAVDEEDEKRKKLEHEIGEGNIATAAAAALASAATKAKHLA
AVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHME
QLKYAEMKARQQMEQQAATQAQGQGQQAPGSGPHSGPPPSGMHPGGPHHGGPPPPNGGMH
PGYPPMGPHHPMGPHHPGQTGPMGPMPGRMMTGPPSGGPPPGGMAPMMPPRHPGAPNGMY
PGPPAAQAEAVPPLPLGPPAPASGRVADN
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgacaacggcgggcggaacgggctcaggcggaccggccaccggcccg
gtcggcggcgggaccgcagtgggccgaaagaaagacggtggcccttctaccaaattctgg
gagagctcggagaccgtgtcccagttcgagacggtgcggcagtggatcggcaagcactac
aagaagtctgtccagaatgactctccatccagtaaatccttggcgggtctggtggtccag
ctgctgcagttccaggaagacacatttggtcgcagggtcaacaactctgctctcaccaag
ctacctgccaagtgtttcctggatttcaaggcagctggtgctctctgtcacatcttggga
tcggtctacaaattcaagagcgagcagggctggcgtagatttgacctgcagaatccttcc
cggatggacaggaacgtggaaatgttcataaatgtagagaagaacttggtccagaacaac
tgcttgactcgaccgaccgtcttcctgtcgccggacatcgagcagaaacaagccagtaag
ctcaaagacatcatcaaaaggcaccagggctccattacggatgacaagtcgaaggccacc
caccacatttaccccactccatcccaacaagaagaagaagagtggcttcgtcccgtcatg
aggaaagacaagcaggtgctggtccactggggtctctccccagacagctatgatacctgg
gtgtcagtcagcgaggtggatggagaagtggaggacccacccgacaccgacagaccatgg
aaggtccacgccaagtgggttttagacacggatgccttcaacgagtggatgaatgaagaa
gactacgaggtggatgacaacaagaagccagtcagcttccgccagaagatcttccccaag
gaggaggagtcttcccgtacacccgatcgcaaggagcgcaaggccaattctgccagcagc
aagaagaggaggcgttcgccttcgccgcccagcacgccggccgagtcccgcaagaaggga
ggaaagaaggggaaccaggggcctcactggaagcgacggggccacagaggcgaggaggag
gacacggaggaggacataaccaaggacttggacgactcctcggctggagccagcatcgag
gagggaagcgtgtccaagaatgccaattcaaagaaagacagtgagaatactccagtgaaa
ggagggaatgtggccgatatggatgacatggaggacgactccgtgctgtctggtggaaag
gacgatgaggagcagagcaaagccgaagtcaaccggctgatggacaacagcgaggacacc
gtgacggagcagactcaccacatcatcatccccagctacggcgcctggtttgactacaac
tgcatccatgagatcgagaggagagccctgcccgagttctataacggaaagaacaagtcc
aaaactccagagatatacctggcctaccgcaacttcatgatcgacacgtatcggctcaac
cctcaggagtacctcacctccacctcctgccgcaggaacctgaccggagatgtctgcgcc
atcatgagggttcacgccttcttggagcagtggggtttggtgaactaccaggtcgactcc
gagagtcgcccgttacccatgggccctccgcccacgccccacttcaccgtgctggctgac
accccgtctggcctcatgcccctgaaccacagacccccaccgattcccccccaacagcca
atgcccaacttcgcagacaaaggcaaagagaagtccatcgacctgcagaacttcggcctc
cgcaccgacctttacaagaagaacttcaagggtaaactggtcaactccaccagggattgg
accgagcaggaaactctcctgctgctggaggcgctggagatgttcaaagacgactggaac
aaagtgtccgagcacatcggttcgcgcacccaggacgagtgcatcctgcacttcctgcgc
cttcccatcgaggacccgtacatggagagcaccgaggcctccctgggccctctggcctac
cagcccatccccttcagccagtctgggaaccccgtcatgagcacggtagccttcctggcc
tctgtggtcgaccccagagtggcgtctgctgccgctcgggcagctttagaggagttctcc
cgtgtgcgcgaggaggtgccgactgagctggtggaggctcacgtgaagaaggtgcaggaa
gcggcccgcagcacggggaaggtggaccccgccttcggcctggagagcagcggcatcgct
ggcaccgcccccgaagaacccgaaaggaccgaagccccggaggcagagaagatggacacg
gacacggactcccagcaggccgataaggcggagttgaaggacgaggccgagaagcccagc
gagtccgcggagaagagcgacaagacggaggccgtggacaaggtgaagaaggaggggtcg
gagcgcgaggaggagagcgaagagggaggggacgcaaagacgattccagccggtaacgac
aaagaaaaggaagagtccatggagacgtcgccctccgagaaggagaagcaggagaaggcg
gccgtcgacgaggaagacgagaagaggaagaagctggagcacgagatcggagaggggaac
atcgccaccgcggccgccgccgccctggcgtcggccgccaccaaggccaagcacttggcg
gcagtggaggagaggaagatcaagtccctggtggcgctgctggtggagacccagatgaag
aagctggagatcaagctgaggcacttcgaggagctggagaccatcatggaccgagagaag
gaggcgctggagctccagcggcagcagcttctcaccgagcgccaggccttccacatggag
cagctcaaatacgccgagatgaaggcgaggcagcagatggagcagcaagccgccacccag
gctcaagggcaggggcagcaggctcccggatccggaccccactccgggccacctccatcg
ggcatgcaccccggagggccccaccacggagggccccccccgcccaatggcggcatgcac
cccggctacccgccgatgggccctcaccacccgatgggccctcaccaccccggacagaca
ggaccgatggggccgatgccgggacgcatgatgaccggcccgccttctggcggccccccc
cccggtggcatggctcccatgatgcccccccgccaccccggagcgcccaacggcatgtac
cccggtcctccagctgctcaggctgaagcggtgcctccacttcctctgggtcctccagcg
cccgcgagtggacgagtggctgacaactaa
DBGET
integrated database retrieval system
