Pseudoliparis swirei (Mariana hadal snailfish): 130212942
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Entry
130212942 CDS
T09868
Symbol
col14a1a
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pswi00535
]
130212942 (col14a1a)
Proteoglycans [BR:
pswi00535
]
Extracellular matrix (ECM) proteoglycans
Others
130212942 (col14a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
DUF4959
VWA_3
Motif
Other DBs
NCBI-GeneID:
130212942
NCBI-ProteinID:
XP_056300242
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All DBs
Position
22:complement(9147974..9235391)
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AA seq
1455 aa
AA seq
DB search
MSSIVQGLTKIVCEQVEQQDKDIKQQHPPEETGAPLELVTSEVTARSFRVSWSHAPGHVE
KYRVLYYPASEGEPQEAVVDGRETSAELQHLRSLTEYQLAVFAVYANEASEALRGSETTL
ALPTVTALQLLDVTHSTMKARWDRVDGVSGYMLLYALLIDDGDLEEKEVKVSEAVTELEL
DGLTPRTEYTVTVYAIYGEEASNPITNQKSTLPLSAPTNLQFSDITHNSAHINWDPAPQK
VKGYRIMWVETDGLVTEEVEVGPDISYDLSELTSLMEYSVAIFALYTEGQSEALTDGFTT
TPVPGPLHLRTNNVGTDSFQVSWDHSANDIILYRLSWAPFTGGDTKEVILSGIDNRYKLS
GLSSSTDYEVMLTAVFRDESESDTVSVIETTWAETTTIATTTPMARQAVRNLLLSDETTR
SMEASWELEDPHVESYRVSYAGLRGNHQEESVLVPGVQMSAELHPLLSDTQYKVTVTPVY
TDGRDGISVSVLGATLALLSPGNLRVSEEWYNRFRLTWDPPQSPAVGYRIAYQPLYDPGP
VLETTVGEDVNSKLLLSLQSGTEYSVQVTATYPAGQSEPLLVNAKTLFLGVSGLSTYQVR
PYSLCVQWQPLLHATLYRVSIQSTLNGQRQEVSLGGGASRQCFYDLTPSSQYQISVHTQM
QEMEGHSVSITDMTLPAPTLAPTELPTTEPPPTIPPAKEVCKEAKADLAFLVDGSWSIGD
DNFMKITRFLYSTMGSLDLIGPDGTQVAIAQFSDDARTEFQLSSHGNKEALLEAIQKIRY
KGGNTKTGRAIKHVKESIFTSEAGARRGVPKVLVVLTDGRSQDDVNKVSKEMQVDGYIIF
AIGFADADYGELVNIASKPSDRHVFFVDDLDAVKKIEEQLITFVCEAATATCPSVLMSGN
TMAGFRMMEKFGLVEKEYSTIPGVSLEPGSFNSFPCYRLHRDALVSQPTKYLHPEGLPSD
YTISMMLRLLPETPKEPFALWEILNKDNEPLVGLILDNNGNTLTFFNYDYKGDFQTVTFE
GTEIKKIFHGSFHKLHVTVSKTSVKVVLDCSVVGEKSVSAAGNITTDGVEILGRMLQSRG
RRDNSAPFQLQMFDIICSTSWASRDKCCELPALRVEEQCPSMPHACTCSQESKGPPGPSG
PPGGPGIRGARGDRGEPGVTGPYGPAGERGPLGPSGPPGPQGPSGLSIQGPPGAAGEKGQ
RGEIGPAGQMGVPGSSGPPGRDGPPGARGLPGNNGPQGRQGPSGPVGGPGGPGALGPSGS
TGSQGDQGLPGPAGTKGDKGERGDVQSQAAVRAIARQVCEQLIQNHLSRYNSILNQIPVQ
SAVSVRTVPGPPGEAGRRGLPGSQGDQGPTGRPGFPGSSGQNGRPGERGPLGEKGERGSP
GVGSQGPRGQSGPPGLPGEGRTGSQGPPGRPGNLGTPGRSGNPGGTGAAGPPGYCDQNSC
LGYNVGVQQDYGNDY
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atgagctccatcgtacagggtttgaccaagatcgtgtgtgaacaagtggagcagcaagac
aaggatatcaaacagcaacatccaccagaggagacaggagcgccacttgagctggtgaca
tcagaagtcacggcccgcagctttagggtttcatggagccacgcccccggacatgtagag
aaatacagagtgctttattatcctgctagcgaaggagaaccacaggaggcggtagtggac
ggtagggagacttcagcggagttacagcatctccgttctctcactgagtaccagctggct
gtgtttgccgtgtacgcaaacgaggcaagtgaagctctcagaggatcagaaacaaccctg
gcccttcccacagtgacggccctccagctgttagatgtgactcacagcaccatgaaagcg
cgatgggaccgcgtggatggagtttctggctacatgctgctgtatgcactgcttatagac
gacggagacttagaagagaaggaggtcaaggtgtcagaagcagtgacggagctggagctg
gatgggctgacccctcgcactgaatacactgtcacggtttatgccatatatggggaggag
gctagtaaccctattacaaaccagaaatctacattaccactgagtgcccccaccaacctc
cagttctctgacatcactcacaactccgcccacatcaactgggaccccgcgccccaaaaa
gttaaaggttaccgcatcatgtgggtcgagacagacggactagtcacggaggaggtggag
gtgggtccagatatctcttatgacctcagtgagttgacgtctctgatggagtactcagtg
gccatctttgccctgtacactgagggccaatcagaggccctcacagacggattcactacc
actccagttcctggtcctttgcatctacgcaccaataatgttggcacagacagcttccag
gtcagctgggatcactcagccaatgacatcatcctctacagactctcctgggcaccattc
acaggtggcgacacgaaggaggtgatcttgagtgggatcgataacagatacaagctgtct
ggtctgagttcctcgactgactacgaagttatgctgacggctgtattcagagatgaatcc
gagagtgataccgtctctgttatagagaccacatgggccgagacgactacgattgctacc
acaaccccaatggcacgtcaggctgtgagaaaccttctgctgagtgacgagaccacccgg
agcatggaggcatcatgggagctggaagacccccatgtggagagctacagggtctcctac
gccggcctcaggggcaaccaccaagaggagtctgtgttagttcctggtgttcagatgagt
gcagagcttcatcctttactctcagacacccagtacaaagtgacagtcacaccagtgtac
accgatggacgagacggcatcagtgtctctgtgctgggtgccacattggccctcttgtct
cctggaaacctccgtgtgtcggaggagtggtacaatcgcttcaggctcacctgggatcca
cctcagtctccggcagtgggttacaggattgcataccagcccctctatgatccgggacca
gttttggagacaacagtgggtgaagatgtgaactccaagctgcttctgagtctacagagt
gggacagagtacagtgttcaagtgacggctacctaccccgcaggacaaagtgaacctctg
ctggtgaatgccaaaacattgttcctcggcgtctctggcttgtcgacctaccaggtacgt
ccctacagcctttgcgtccagtggcagccccttctacatgccacgttgtacagagtctcc
atacagtccacgctcaatggtcagagacaagaagtgagcctgggaggtggtgcttcccga
cagtgcttctatgacctcactcccagcagccaataccagatcagtgttcatacccagatg
caggaaatggaaggacattctgtttccatcactgacatgacgctgccagcacccactctc
gctccgactgaactccccaccacagagccccctcccaccatcccacctgctaaagaagtg
tgtaaggaggccaaggcggacctggcattcctggtggatggttcttggtccatcggagac
gacaacttcatgaagatcacacgtttcctctacagcaccatggggtcactggatctgatt
ggaccagacggtacccaggtggccatcgctcagtttagcgacgatgctcggacagaattc
cagctgagttcccatggcaacaaggaagcgctgttggaagctatccagaagatcagatac
aagggaggaaacacaaagacaggtagggccatcaaacatgtgaaggagtctattttcacc
tcagaagctggagctcgaaggggcgttcctaaagtcctggttgttctcactgatggacgt
tcccaagatgatgtcaacaaagtgtccaaggagatgcaggtggatggctatatcatcttt
gccatcggctttgcggacgctgactatggggagctggtgaatattgccagcaagcccagt
gatagacacgtcttcttcgtggacgatttggatgctgtgaagaaaatagaagagcagctc
attacttttgtctgtgaggctgccaccgccacttgtccatctgttttgatgagtggcaac
accatggcaggtttccgtatgatggagaagtttggcctcgtagagaaggagtacagcacc
atacctggagtttctctggagccgggttcattcaacagtttcccctgttacagattacac
cgtgacgccctggtgtcacagcccaccaagtaccttcatcctgaaggtttaccttctgac
tacaccatctctatgatgctccgcctacttccagagaccccgaaggagccctttgcattg
tgggaaatcctcaacaaggacaacgagccattggtcggactaatcctggacaacaatggg
aataccttgacgttcttcaactatgactacaaaggagacttccagaccgtcacttttgaa
ggaaccgaaataaaaaagatcttccacggcagcttccacaagctccatgtgaccgtcagc
aagacgtcggtgaaggtggtgttagattgttccgtggttggggagaaatccgtgagtgcc
gctggtaacattaccacagatggagtggagatcctcggaaggatgcttcagtccagaggc
agacgggacaactctgctccattccagctccagatgtttgacatcatctgtagcacatcc
tgggccagcagagataagtgttgcgagctgccggcattgagagttgaggagcagtgcccc
tccatgcctcatgcctgtacctgctcccaggagagcaaaggacctccaggaccttccgga
ccccctggcggtccaggcattaggggagccagaggagaccgaggagagccaggagtgacg
ggaccttatgggccagcgggagagcgtggccctttaggaccctcaggacctcctggtcct
cagggccccagtggtctctctattcagggacccccgggtgctgctggggaaaagggacag
aggggagagatcggtccagccggacaaatgggtgttcctggaagctcgggcccccctggt
agagacggccccccaggagcgaggggtctgccaggtaataatggaccacagggacgacaa
gggccttctggacctgttggaggcccaggaggaccaggagctctaggacctagtgggtca
acggggtcccaaggagatcaaggacttcctggtcctgctggtaccaaaggtgataaggga
gaaagaggtgatgtgcaatcccaagctgctgtgcgtgccatcgcacggcaagtgtgtgag
cagctcatccagaaccacttgtctcgctataactccatcctgaaccagatccccgtccag
tcagcggtgtcggtccgaacggtaccgggaccacccggagaggcaggtaggagaggcctc
ccgggatctcaaggagaccaagggccaaccggcaggccgggcttcccaggcagcagcggc
cagaacggacgaccgggagagagaggtcctttgggagagaagggagagagaggaagtcca
ggagttggaagtcagggacctcgaggacaatccggacctccaggcctgccaggtgaaggt
cggacaggcagccagggcccccccggtcggcctggtaatctgggaacaccggggcggtca
gggaatccaggcggtacaggagcggccggcccgcctggctactgtgaccagaactcgtgt
ctggggtacaacgtcggagttcaacaggactatgggaatgattactga
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