Pseudoliparis swirei (Mariana hadal snailfish): 130212963
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Entry
130212963 CDS
T09868
Symbol
dcaf13
Name
(RefSeq) DDB1- and CUL4-associated factor 13
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pswi03009
]
130212963 (dcaf13)
04121 Ubiquitin system [BR:
pswi04121
]
130212963 (dcaf13)
Ribosome biogenesis [BR:
pswi03009
]
Eukaryotic type
90S particles
Other 90S particles
130212963 (dcaf13)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
130212963 (dcaf13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sof1
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
ANAPC4_WD40
eIF2A
MIOS_WD40
Beta-prop_NUP159_NUP214
KNTC1_N
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
130212963
NCBI-ProteinID:
XP_056300277
LinkDB
All DBs
Position
22:complement(19022349..19029592)
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AA seq
445 aa
AA seq
DB search
MKVKVLSRNPDDYVRETNLDIQRVPRNYDPTLHPFEVSREYTRALNATKLERVFAKPFLA
SLDGHRDGVNCMAKHTKSLSTLLSGSCDGEVKVWNLTKRECVRTLQAHEGFVRGMVVRSC
GTSFFTVGDDKTIKHWKMETPGYGEQEEPLNTILGKTVFTGLDHHQKDAVFATCGQQVDI
WDEKRSSPIRSFTWGVDSFSAVRFNPVETELLASCASDRSIVLYDMRESTPLKKVIMTMR
SNTLSWNPMEAYYFTCANEDYNLYTYDMRYLDQPVTVHMDHVSAVLDVDYSPTGKEFVSA
SFDKTIRIFPKDGGHSREVYHTKRMQHVICIKWSVDNKYILSGSDEMNIRLWKANAAEKL
GVLAPREREATNYSQKLKEKFQHHPQIRRIAHHRHLPKSLYHQTKELRVMKEARRKKERN
VRKHSKPGSVPLLSEKEKHVVTVVK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttaaagtcctctcgaggaacccggatgattacgtccgggagactaatctagat
attcaacgtgtccccagaaactatgacccgactctgcatccgtttgaggtgagcagagag
tacacccgggccctgaacgccaccaagctcgagagggtgttcgccaagcctttcctggcc
tctctggacggacacagagatggggtcaactgcatggccaagcacaccaagagcctctcc
accctgctctctggctcctgcgacggggaggtgaaagtgtggaatctgaccaaacgcgaa
tgtgtccgcactctccaagcgcacgaagggttcgtccggggaatggtcgtccgctcttgt
ggaacctccttcttcacggttggtgacgacaaaactatcaagcattggaaaatggagaca
cctggttacggcgagcaagaggagccactcaacactatcctgggcaagactgtcttcacc
ggcctggaccaccaccagaaggatgccgtgttcgccacatgtggccagcaggtggacatc
tgggacgagaagaggagcagcccaatccgctctttcacttggggcgtagacagcttcagc
gccgtgcgcttcaacccggtggagactgaactacttgcaagctgtgcctctgacagaagt
atcgtactgtatgacatgagagaatcaacgccacttaaaaaggttatcatgacaatgaga
agcaacacattatcttggaaccctatggaagcctattacttcacatgtgctaatgaggac
tacaacctctacacatatgacatgaggtacctggaccagccagtcacagtgcacatggac
cacgtctctgcagtgctggatgttgactattctccaacagggaaggagtttgtatctgcc
agttttgacaaaaccatccgcatcttccccaaggacggtggccacagcagggaggtctac
cacaccaaacgcatgcagcatgtcatctgcataaagtggtcagtagacaacaaatacatc
ctgagcggctccgacgagatgaatatccgactgtggaaagccaacgcagctgagaagctg
ggagtgctggcccccagagagcgggaggccaccaactacagccagaagctgaaggagaag
ttccagcaccacccgcagatccggcgcatcgctcatcaccgacacctgcccaagagcctc
taccaccagaccaaggagctgcgggttatgaaagaggctcgtcgcaagaaggagaggaat
gttcggaagcacagcaagccgggaagtgttcctctgctgtccgagaaggagaagcacgtt
gtgaccgtggtcaaatag
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