Pseudoliparis swirei (Mariana hadal snailfish): 130213027
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Entry
130213027 CDS
T09868
Symbol
tnxba
Name
(RefSeq) tenascin
KO
K06252
tenascin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04510
Focal adhesion
pswi04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130213027 (tnxba)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130213027 (tnxba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130213027 (tnxba)
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130213027 (tnxba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fibrinogen_C
fn3
EGF_TEN
EGF_Teneurin
Fn3_Dep-1_2nd
EGF_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
EGF_Tenascin
Motif
Other DBs
NCBI-GeneID:
130213027
NCBI-ProteinID:
XP_056300379
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All DBs
Position
22:11313860..11318840
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AA seq
984 aa
AA seq
DB search
MTHWISLLPGGCTGGCEADMSALKGRLARLEREMSYLKDKCPCSANCQNDCSGNGECEKG
KCICQQGFMGLDCSKCAQGAECNKKTAKGKVKVTVETLQVNKDKESVQEKTTKVEHTLFQ
KKEQKKGSDAKETVTKPIVSTNAKAGIIKTQTKQEAYVKKITTKDSSSATKTSRPTVGQV
LLKHEGKKQEEARKGKTTILTSKKVIQKIDLKLVKEGTLSKTHPRTDQLKDEPQTNVTQS
NVKKSNGTAKILSILTKVEETNRTRTEKKTLEQSTLADKNVTQSSGNKRSKKVKADTTNV
QSVDNRNTDTGKIVKDKLTQRSQSLVNSTIAATSVQTQVVQNKTTTHGSGSVRRMGGSGL
GSVKVVNISSYSFTVTWSAPQGMFKNFTVIRREPRTEGDEDDQEEFEDEALEGDRASTVR
NTTEVQVQSESTNTTAPSSKAVGSKGKAETKRISMVVPGSVRSVEFSNLRANIGYVLHVY
GTAAERRSKIHRATAITGPEPATEMVFSNVTESSITVSWSKPKTTFSGFRVTFTNIITGE
SRFVTVELQQSYVVLSKLSTGSTYIITITTTHGRAQSDALISLMTTVPAPPTHLQVVNVT
DTRAVLQWTPSLGKVDRFIISYESSKTLNVTVTVMLSGNSVEHQLRGLQRGTLYTVKVLS
QKDSLQSMAISTTFTTANLVKASEVAPRSAVIAWRTSTVVYYSYRLIYQVAGEETKEVIL
DQSITEYKLTGLLPMSRYIVLVQGERDGQYTSVVTTEFLTGKLRFPFPTECSQELLNGAL
QSGELDIYPQGKEGQAARVYCDMETDGGGWTVFQRRMNGKTDFYRTWSEYSAGFGNLSED
FWLGNELLHNLTGAGPVSLRVDMQSGNDTTYAHYANFSVGSLEKHYTLGVSGYTGTAGDS
MRYHNGRPFSARDKDLDPLGIHCARAYMGGWWYKNCYKANLNGLYGISSNNQGVVWIDWK
GKDSSIPFVEMKFRPSSFSPATHG
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgacgcattggatcagcttgttgcctggtggatgcactgggggatgtgaggccgacatg
tctgcgctgaaaggacgcctggcccgactggaaagagagatgtcctatttaaaagataaa
tgtccatgttctgcaaattgtcaaaacgactgtagtggcaatggggaatgtgagaagggg
aaatgtatctgccaacagggattcatgggtctcgactgcagtaagtgtgcacaaggagct
gagtgtaataaaaaaactgccaaaggaaaagtcaaggtaaccgtggaaaccctacaggtg
aacaaagacaaggaaagcgtgcaggagaaaaccaccaaagtagagcacacactgttccag
aagaaggagcagaaaaaggggtctgacgctaaagaaactgtcaccaaacccatagtctcc
actaatgctaaagcaggtatcattaagacacaaactaaacaagaagcctatgtgaagaaa
attacgacaaaagactcttcaagtgccacaaaaaccagccgcccaactgttggtcaagtt
ctgttgaaacatgaggggaaaaagcaggaggaggctcgtaaaggcaaaacaacaatcctg
acctctaaaaaggtcatccaaaaaattgatctcaaacttgttaaggaaggaactctcagt
aaaacccatcctagaactgaccaactaaaagacgaacctcaaaccaatgtaacccagagt
aatgtgaagaaatcgaatggcacggcaaaaattctgagcattctgacaaaagttgaggaa
accaacagaaccagaaccgagaagaagaccttggagcagtccacactggctgacaaaaat
gttactcaatcatctggaaataaacgcagcaagaaggtaaaggcagacactaccaatgtg
caatctgttgacaacagaaacactgacactggaaaaattgtaaaagacaagctgacgcag
cggagtcagtccctggttaattcaaccattgcagcaacgtcagtccaaactcaagttgtg
cagaataaaacaaccacccatggatctgggagtgtgagaaggatgggaggatctggatta
ggttctgtaaaagttgtgaacatctcctcctacagcttcactgtcacatggtcagcacca
caagggatgttcaagaacttcacggtgatcagaagagagccacggacagagggtgacgaa
gatgaccaagaggagtttgaagacgaagctctcgaaggagacagggcctccacagttagg
aacacaactgaagtccaggtacagagtgagagcaccaacacgacagccccctccagtaaa
gctgttggatctaaaggcaaagctgaaacaaagagaatctctatggtggtccccggcagc
gtacgctccgtggagttcagtaacctgagggccaacataggctatgtcctgcatgtgtac
ggcactgcagctgagaggaggtcaaagattcatagagcaactgcaattacaggtcctgag
ccagccacagagatggttttcagcaacgtaacagagtcttctatcactgtttcctggtcc
aaaccaaagacaacattctctggctttagggtcacgttcaccaacatcatcacaggggag
agccgctttgtcacagtggagttgcagcaatcttatgtggttctgtccaagctgtctact
ggatccacctacataatcactataactacgacacacggcagagcccagagtgacgcgctc
atatccctcatgaccacagtgcccgctcctccaacgcatctgcaagttgtcaacgtgaca
gacaccagagctgtgctgcaatggacacccagtctggggaaagtagaccggttcatcatc
agctatgagtcctccaagactctgaatgtgacggtgactgtgatgctgtctggaaactct
gtggagcaccagctgagaggcctgcagagaggcaccctgtacacagtcaaagtcctgagc
cagaaggacagtctacagagcatggccatctcaactacttttacaacagctaatttggtt
aaagccagtgaggtggctcctcgctctgctgtgatagcgtggagaacttccactgttgtt
tattacagctacagactgatctaccaggtggccggagaggagacaaaggaggtgatcctg
gaccagtccatcacagagtataagttgacagggctgttgccaatgtcacggtacattgtt
ctggtacaaggcgagagagatggacaatacacatctgttgtcaccacagaattccttaca
ggcaaactgcgtttccctttccccactgagtgctctcaggagctgctgaatggagctctg
cagtcaggagagctggatatttacccgcaaggaaaagagggacaggcagccagagtctac
tgtgatatggagactgatggaggcggctggacggtgttccagaggaggatgaacgggaag
accgatttctacagaacatggagtgaatacagtgccggctttggaaacctcagcgaagac
ttctggctcggaaacgagctccttcacaacctgaccggtgctgggcctgtgagtctgaga
gtggatatgcaatctgggaatgatactacgtacgctcactacgcaaacttctccgttggt
tccctggagaagcactatactctgggagtgtctggctacactggaactgcaggtgactcc
atgaggtaccataatggacgcccattctcagcccgggacaaggaccttgatcccttgggg
atccactgtgccagggcctacatgggaggctggtggtacaagaactgctacaaggccaac
ctgaatggcctttatggcatcagcagtaataatcagggagtagtctggatagactggaaa
ggtaaagactcctccattcccttcgttgagatgaagttcagaccgtccagcttctctcct
gcaactcatggctaa
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