Pseudoliparis swirei (Mariana hadal snailfish): 130213034
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Entry
130213034 CDS
T09868
Symbol
trpv1
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1 isoform X1
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
130213034 (trpv1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pswi04040
]
130213034 (trpv1)
Ion channels [BR:
pswi04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
130213034 (trpv1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ion_trans
Ank_3
Ank_5
Ank_4
DUF2306
DUF1843
PKD_channel
Motif
Other DBs
NCBI-GeneID:
130213034
NCBI-ProteinID:
XP_056300391
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Position
3:complement(12188869..12197635)
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AA seq
780 aa
AA seq
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MEKSEMFGFSLEADDRTEEEKSRQKATKKGGVASALGLGQESPAAPMDTDYQEEMEQTSP
QIRFNLNFDKGTRGEHQHKRDSKTFTIDRLFEAVASGDVSKLDSLHQYLRQNMKKLSDSL
YQSHGKTALMKALLHLKNDKNDTVELLIGISETMGDIKEFVNAAYTNSYYKGQTALHIAI
ERRNISYVKLLVSKGADVHAKACGVFFQPHDGPNFYFGELPLSLAACTNQPTVVDFLMEN
EYQRATAQMADSQGNTVLHALVMVADYSKDKDKDNTEFITNIYDRILKTTAQLHPKLKLE
DIENHKGLTPLKMAAKTGKIGLFAHILKREFHESHIRHLSRKFTEWTYGPVHSSLYDLAS
VDSYEDNSVMEILVYGSDTPNRHEMLQMEPLSRLLEEKWKKFGGRMFFLNFLFYLLYLIV
FTLVAYNKKFGELPYPIKHTTAGYLYVSGQVVIALANCYFFVIGILELKRKRPKLHTLLI
DGYYDILFFAQGVLFLITAGLYLFGKKQYLNFLVLCLALSWVNMLYFSRGDKHMGVYSVM
IQKMILSDIMRFLLVYIIFLFGFSAAVVTLLKEPRVINTTLTPQKGRLFGPLDADEKCVK
PYFRSISYTTLQLFKFTIGMGEMEFTQEHENTVVFFVLLITYIILTYILLLNMLIALMNR
TVEKTTEESTSIWKLQRAITILEMEKRLSCCLRKRFRCGVEKNLGTGLGDDRRRCFRVEE
VNWNKWNINLGKINEDPGCWDQTQQPASAPPPIRAIRGRSWRSWWTPTSQSTEMPPLSMV
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggagaagtccgagatgtttggcttctctctggaggctgacgaccggaccgaggaggag
aaaagtcgtcagaaagcgacaaagaagggcggcgtggcttctgccctgggcttgggccag
gagtcgcccgcggcccccatggacactgactaccaggaggagatggagcagaccagtcct
cagatcagattcaatctgaactttgacaaagggactcgaggcgagcaccagcacaagaga
gacagcaagacgttcaccatcgacaggttgttcgaagccgtggccagcggcgacgtcagc
aagctggacagcctgcatcagtacctgcgccagaacatgaagaaactctccgactccctg
tatcagtcccatggtaagaccgccctgatgaaggctctgctgcacctcaagaacgacaag
aacgacacggtggagctcctcatcggcatttcagagacgatgggcgacattaaggagttt
gtgaatgcagcctacaccaacagctactacaaaggccagacagctctccacattgccatc
gagaggagaaatatttcctatgtgaagctgctggtcagtaaaggagcagatgtccacgcc
aaagcctgcggggtgttcttccagccacatgatggcccaaacttctactttggggaactg
cctctgtctctggcagcctgcaccaaccagcccactgtggtggacttcctcatggagaac
gagtaccaacgggccaccgctcagatggcggactcccagggcaacacggtgctgcatgcc
ctggtgatggtggcggactactccaaggataaggacaaggataacacagagttcatcacc
aacatatacgaccgcatactcaagaccaccgctcaactgcaccccaagctgaagctggag
gacatcgagaaccacaaggggctgacgcctctcaaaatggctgccaagaccggcaagatc
gggcttttcgcacacatactgaaacgtgaattccacgagagtcacatcagacatctgtcc
cgtaagttcaccgagtggacttacggccccgtccacagctccctttacgacctggcctcg
gtggactcgtacgaggacaactccgtcatggagatcctggtctacggcagtgacactccc
aaccgccacgagatgctccagatggagcctctgagccggctgctggaggagaagtggaag
aagttcggaggccggatgttttttctcaacttcctgttctacctcctgtacctgatcgtc
ttcactcttgtcgcctacaataagaagtttggagagctgccgtaccccatcaaacacacc
acagccggttacctgtatgtgtcaggccaggtggtgatagcgctggcaaattgctatttc
tttgtcatagggatcttagagttgaagaggaaacggccgaaactgcatacgttgctgatt
gatggatattatgatattcttttttttgcgcagggcgtcctcttcctgatcacggccggc
ctgtatctgttcgggaagaagcagtacctcaacttcctggtgctgtgccttgctctcagc
tgggtgaacatgctctacttctccaggggcgacaaacacatgggcgtgtacagcgtcatg
atccagaagatgatcctcagtgacatcatgcgctttcttctcgtctacatcatcttcctc
tttggattttcagcagcggtggtcaccctgctcaaagagccccgtgtgataaacaccacg
ctgactccgcagaaggggcgtctgtttggtcccctcgatgctgacgagaagtgtgtcaaa
ccctacttcagaagcatctcctacaccacgctgcagctcttcaagtttaccatcggcatg
ggcgaaatggagttcacccaggagcacgagaacactgtggtgttcttcgtgctcctcatc
acctacatcattctcacctacatcctgctgctcaacatgctcatcgccctcatgaaccgc
accgtggagaagaccacggaggagagcaccagcatctggaagctacagagggccatcacc
atcctggaaatggagaagaggctgtcgtgctgtctgaggaagaggttccgctgtggggtg
gagaagaacctcggcactggtctcggagatgaccgtcgccggtgtttcagagtggaggaa
gtcaactggaacaaatggaacatcaacctgggcaaaatcaatgaggatcccgggtgctgg
gatcagacccaacagccggcctcggcccccccgccgatcagagcaatccgagggaggagc
tggagaagctggtggacaccgacatcccagtccacagaaatgcctcctctgagcatggtc
taa
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