Pseudoliparis swirei (Mariana hadal snailfish): 130213082
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Entry
130213082 CDS
T09868
Symbol
col6a4a
Name
(RefSeq) collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04510
Focal adhesion
pswi04512
ECM-receptor interaction
pswi04518
Integrin signaling
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130213082 (col6a4a)
04518 Integrin signaling
130213082 (col6a4a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130213082 (col6a4a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130213082 (col6a4a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pswi04147
]
130213082 (col6a4a)
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130213082 (col6a4a)
Exosome [BR:
pswi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
130213082 (col6a4a)
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130213082 (col6a4a)
Hyaluronan
Extracellular matrix or blood plasma proteins
130213082 (col6a4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
VWA_CoxE
Kunitz_BPTI
Motif
Other DBs
NCBI-GeneID:
130213082
NCBI-ProteinID:
XP_056300479
LinkDB
All DBs
Position
22:743379..788568
Genome browser
AA seq
2795 aa
AA seq
DB search
MIITELHKGPGRVPHREQRRTRTEHVVGQTCFSHCEAVKLSSPPGGRRRQLGGVSCRPVC
PSIHGCRTPVFGAQRTAAADREKPEMEGRRGLLLGLMVAVCFYCNAADKTVCTQEAVADI
VFMVDGSWSIGAENFQQIRQFLSTLVSSFDVGPEQVRIGLVQYSTTPRSEFLLNTYRSKE
DILQYISSFPYMGGGTQTGLGLDFMLKEHFVEKAGSRGGRSVPQIAVVITDGKSQDDVES
HAQDLKRKGIVLYAIGIKDADEDQLMEMATQPHSQHVYSVSDFAALQEISQNIVQTLRTT
VEEVKRQLLQLSQECAKATVADIVFLVDGSSSIGIGNFQEIRQFLRSVVNGLDIGPDKVR
IGLAQYSDEATTEFLLKDHMDKTSLLAAVDALSYQTGGTETGEAITYLQENYFTEEAGSR
ANRRVPQIAVVITDGDSTDDVMAPAKSLRQHGVIVFGIGVGEANRKELESIANRPPDRFL
SSIANYQALKMLKDRLLHTVCISVEDQRQALEERFADIFFLVDSGMSPADFQQVRALLTR
LVNQMNIGASAYRLGLAQYGPDIRVEFLLSAIQTKEDTQTAVKRFRQRRLQPGEPRKLGS
ALEFASTNFFTSEAGSRAAQGYRQFLVVISGKDSDDPMYKESRLIKSSGVTVVGMSLGAS
MQEMRVVATAPHTYQSIATVPALRAIFEREEMETILTGDCKAAKVADIVFIVDESGSIGT
PNFQLVRTFLHSVVNGLEVSPSRVRVGIVTYNEKSTAQVYLNTFNDKKELLKFIKILPYR
GGGTNTGKALEFALKEVFIAQRGSRRAKGVQQVAVVITDGESQDNVSTAAANLRRDGITV
YAVGVKDANDAQLVEMASHPPHKHKFIVDSFAKLKSLEQSLQKMLCHNILRKAVSLSTRR
TGIKEGCVQMDEADIFFLIDHSGSIYPKDFKDMKMFITEFLHTFRIGSQHVRMGVVKYAD
SPDLEFDLTEYTDAKTLEKAVEGIRQIGGGTETGRALEFMGPHFARAMVTRGHKVPEYLV
VITDGKSSDEVKVPAEKLRAQGVIVYAIGVKNADAVELGEISGDPKRTFFVNNFDALRPI
KDDIITDICSQDACKDTPGDLLFLIDSSGSIFPQDYQKMKDFMKSVMGKSLIGQNQVHVG
VMQFSTVQQLAFPLNLYYSKEDMSKAIDDMQQVGGGTLTGGAITDVSQYFDASKGGRPGM
RQRLVVITDGEAQDQVKGPAEDLRAKGVLVYAIGVVDANTTQLLEISGSPDRTYVERNFD
ALKDLESQVAMELCDPERECKKTERADIIFLVDGSTSITLSKFRSMQKFMGSMVNQTTVG
KDLTRFGVILYSNEPKSVFTLKTYNSKREVLKAISALKSPYGDTYTGRALAYSLEFFSDA
HGGRAALQVPQILVVITDGDATDRNSLLPPSVALQDKGISVFSIGVEGANRTQLEIMSGH
DTSRVFYVDNFDALETLYTNISHVLCNSTKPVCEKQQADLVFLIDQSGSIGPNDYDTMKQ
FTTSLVNSFKVSETLVRVGLAQFSSTFQKEFYLNEFYSEPVVTKHIVDMEQLGGGTNIGL
ALDSIREYFEASRGSRRSEGISQNLVLITDGESQDDVEEAADRLRALGIEVFAIGIGHVH
DLELLQITGMAERLFTVHNFGGLEKIKQKVVDTICKSKPIKDSSACSIDVAIGFDISREN
RAPGEMLVSGHAKLEAFLPEVARYVSSVPGLCCVGPEPVKTNIAYKVVARDGRSLYDFNF
EPHSKDVVNKVMTSNMAEPTYFNADLLKAFRKTFSTQSHAGVKVLVIFSDGLDEDVMALE
QEAELLRQSGVSALLTVALEGARDPAQLQMVEFGRGFGYKLPLSIGMGSVGSSLLQQIDA
VADRECCNVVCKCSGPEGTRGSRGPPGSKGPPGHKGVPGFPGDEGGAGERGGPGPSGPQG
VQGCSGLRGPKGYRGLRGNRGEQGEDGLDGIDGERGRTGTDGGRGPRGDPGNPGIPGIRG
EAGLAGQRGLRGDPGEPGADDTRPGAKGDPGNAGLPGTPGQDGRPGEGGLLGNPGPDGRR
GALGGKGAPGEPGVLGLQGSPGASGPQGTSGLRGQPGPRGVTGLPGPQGGPGSSGAPGSA
GRCGANGQKGQPGDPGDKGVPGSKGPRGMAGEDGKDGHGAAGLQGVRGDPGFPGYPGLLG
ENGLQGPTGQPGRKGNRGRGGNSGRPGESGVSGEPGYRGHRGPRGLPGGKGMTECQLITS
IRDNCACSPGPSECPAFPTELVLGLDMSEDVTPAAFERQRSVLLSLLESISVSESNCPTG
ARVAVVGYSADTKYLIRFQDYHRKTQLMESVRNIALERTSNRRQLGAAMRFVGQNVFKRV
RAGMMMRKVAVFLSNGPSADVGDIVTAVMEYRAVGIVPAVISLRNAPAVGRAMEVDDSGS
SIFSVLGKDMAADLEKVKTCAICYDPCRRSAQCGFIQDPVRPQEVDMDLVLVVDGSREVQ
ADEYAGVQQLLGSVVEQLVVSPQPRKAGNQARVALVQLGAQDTTVGFGLGTYQTNALMRK
HLIRNMTQQGGSSALGRTLEFTLKEVLLKAGQPRRRRVLLAVVGTPTAREDRAKLRYISK
KAKCEGVALFVVTVGDRYDRSQVEDLVSLPVHQHLIHIGSLKTGEQLYAQRFFRVFLSAL
SKGMNSYPPASSKRTCDQLTGQTGGQTSINGQGTAVVDWKEFKEEEEEESFQEQTRGQTQ
TGQLDIVHSLTGGDGQRLIANDQNLLPSPELASFFSKERCLLSQDQGGCQNYTMMWFFDS
QQEACSRFWFGGCGGNENRFKTQDECENLCVAKSR
NT seq
8388 nt
NT seq
+upstream
nt +downstream
nt
atgatcatcactgagctccacaaaggaccaggccgtgtcccacatcgtgagcagaggaga
acaaggactgaacatgtcgttggacagacgtgtttctcacactgcgaggcggtcaagctt
tcctctcctccaggagggaggaggcgacagctgggaggggtttcctgcagacccgtctgc
ccctccatacatggctgcaggactccagtgtttggagctcagaggaccgcagcagcagac
cgagagaaaccagagatggaagggaggcggggtcttctgctcggcctcatggtggcggtg
tgtttctactgcaacgccgctgacaaaacagtctgcactcaagaggctgtagccgacatc
gtcttcatggtggacgggtcgtggagcatcggcgctgaaaacttccaacagatccgtcag
tttctgtccacgctggtcagcagcttcgacgtggggcccgagcaggtccgcatcgggctg
gtccagtacagcaccaccccgcgcagtgagttcctgctcaacacctatcggagcaaagag
gacatcctccagtacatcagcagctttccctacatgggcggcggcacccagacgggcctg
ggcctggacttcatgctgaaggagcactttgtggagaaggccggaagccgagggggccgg
agcgtgccacagatcgctgtggtgatcaccgacggcaagtcacaagacgacgtcgagtcc
cacgcccaagacctgaagagaaaggggatcgttttgtatgcgattggtatcaaagatgcg
gatgaagaccagttgatggagatggccacgcagcctcacagccagcacgtgtacagcgtg
tctgactttgcagcgctgcaggagatctctcagaacatcgtgcagacgctccgcaccacg
gtagaggaggtcaaacggcaactcctgcaactgtctcaagaatgtgccaaagccaccgtg
gccgacatcgtcttcctggtggacggctcctccagcatcggaatcggtaactttcaggag
atccggcagttcctccgcagcgtagtcaacggtctggacatcggacccgacaaggttcgc
atcggcttggctcagtacagcgatgaagccaccaccgagttcctgctgaaggatcacatg
gacaagacgtccctgctggctgcagtggacgctctttcctaccagaccggaggcacggaa
acgggcgaagccatcacgtacctccaagagaactatttcacagaggaggcggggagccga
gcgaaccgacgggtgcctcagattgccgtggtcatcacggacggagactccacggacgat
gtgatggcgcccgccaagagcctgcggcagcacggggtcatcgtattcggcatcggggtg
ggagaagccaaccggaaggagctggagtccattgctaaccggcctccagatcgcttcctg
tcctccatcgcgaactaccaggctctgaagatgctgaaggaccgtctgctgcacactgtg
tgcatctctgtggaggaccagaggcaagccttggaggagcggtttgcagacatcttcttc
ctggtggacagtggcatgtctccggcagacttccagcaggtcagggccctcctcacccga
ctggtcaatcagatgaacatcggagcctccgcctaccgtcttggcttggcccagtacggt
ccagatatcagggttgaatttcttctcagtgccatccaaaccaaagaggacactcagacc
gcggtcaagcgtttccgccagcgcagactgcagcccggcgagcctcgtaaactgggcagc
gcgttggagtttgccagcacaaactttttcaccagtgaggcggggagccgggcagcccag
ggctaccggcagttcctcgtcgttataagtggaaaagactcggacgatcccatgtataag
gagtcccgtctgatcaagtcctccggagtcaccgtggtgggcatgagcctcggtgcgtcc
atgcaggagatgcgcgtcgttgccactgcgccgcacacctaccagtccatcgccactgta
cccgctctcagggccatctttgaaagagaggagatggagaccatcctcactggagattgc
aaagcagccaaagtggccgacatcgtgttcatcgtcgatgagtctggaagcatcgggacc
cccaacttccagctggtgcggactttcctccactcggttgtgaacggcctggaagtcagt
ccctctcgagtccgagtgggcatcgtcacgtacaacgagaagtccacagcgcaggtctac
ctcaacaccttcaacgacaagaaggagctgctgaagttcatcaagattctgccttatcgt
ggcggcggtacgaacactgggaaggccctcgagtttgccctgaaagaggttttcatcgcg
cagagagggagcaggcgagcaaagggtgtccagcaggtggcggtggtgatcacagacggt
gaatcccaagacaacgtgagcacagcagcagctaaccttcgaagagatggaatcacggtt
tacgcagtcggggtcaaagatgccaacgacgcccagctggtggagatggcgtctcatccg
ccccataagcacaagttcatcgtggatagttttgccaaactgaaatcactcgagcagagc
ttgcagaaaatgctgtgccataacatccttcggaaagcggtctcactcagtacaagaaga
accggcatcaaagaaggctgtgtacaaatggacgaggcggacatcttcttcctgattgat
cactcggggagtatttaccccaaagactttaaagacatgaagatgttcattactgagttc
ctacataccttccgtattgggtcacaacatgtccgcatgggggttgtaaaatacgcagat
tcgccagatttagaatttgatctgacggagtacaccgatgcaaagactttggagaaggct
gtcgagggcattagacagataggaggtgggaccgagaccggaagagctctcgagttcatg
ggcccgcactttgctagagccatggtaactcgtggtcacaaggtcccggagtacctagtg
gtcatcactgatggcaaatcctccgatgaggtcaaggttcccgcagagaaactgagggcg
cagggcgtcatcgtctacgccatcggggtgaagaatgccgatgctgttgagttgggagag
atctccggtgaccccaagaggactttctttgtcaataactttgatgctttgaggcccatc
aaggacgacatcatcacagacatctgttctcaagacgcttgcaaagacacaccgggcgac
ctccttttcttgattgacagttctgggagcatctttccacaagactaccagaaaatgaaa
gacttcatgaaatctgtcatgggcaagtccctcattgggcagaaccaggtccacgtcggt
gtcatgcagttcagcaccgtccaacaactggccttccccctcaacctctactacagcaag
gaagacatgtccaaggccattgatgacatgcagcaggttggtggaggcacgctcacaggt
ggagccattactgacgtgtcacagtactttgatgcatccaaaggagggcgtcctggcatg
aggcagaggctggttgtgataacagacggggaggcccaagaccaggtcaaaggcccagcc
gaggatctgagggccaagggagtgttggtctatgccatcggagtggtggacgccaacacc
acccaactcctggagatcagcggctcaccagacaggacgtatgttgagaggaactttgat
gctctgaaggacttggagagccaggtggccatggagctctgtgacccagagagagagtgt
aagaagactgaacgagctgacatcattttcctggttgacggctctacgagcataaccctg
agcaaattcagaagcatgcagaagttcatggggtcaatggtgaaccagaccaccgtgggc
aaggacctgactcgcttcggggtcattctttactccaacgagcccaaatcggttttcact
ctgaaaacgtacaactccaaacgagaggttcttaaggccatttccgcactgaagtccccg
tatggagacacctacaccggcagggcgttggcatactctctagagttcttcagcgatgct
catggtggccgggcggctcttcaggtgccacagattcttgtggtgatcacagacggtgat
gctactgaccggaacagtctgctccctccatccgtggcgctgcaggacaaagggatcagt
gtcttcagtatcggagtggaaggagccaaccggacacagctggagatcatgtctggtcac
gacacgtccagagttttctacgtggataactttgatgccctggaaacgctgtacaccaat
atttctcatgtcctctgcaattccaccaaaccagtttgtgagaagcagcaggcggacctg
gtcttcctcatcgaccagtctggcagcatcggcccaaatgactacgacaccatgaagcag
ttcaccaccagcctggtgaacagcttcaaagtcagtgagaccttggtgcgggtaggactc
gcccagttcagcagcactttccagaaagagttttacctcaacgagttttacagcgagccg
gtcgtgactaagcacatcgtggacatggagcagctgggaggaggcaccaacatcggcctg
gccctggattccatcagggaatattttgaggcatcgcggggcagccggagatccgaaggg
atctcacagaatctggtgctgatcacagacggagagtcgcaggatgacgtggaggaggcg
gcggaccgtctcagggctctggggatcgaggtgtttgccatcggcatcggacacgtccac
gacctggagctgctgcagatcacgggcatggcggagaggttgttcactgtgcacaacttc
ggcggcctggaaaagatcaaacagaaggtggtcgatacaatctgcaaatctaaacccatc
aaagactccagtgcctgcagcatcgacgtcgccatcggattcgacatctctcgtgaaaac
agagctcctggcgagatgctggtcagcggccacgccaagctggaggccttcctgcccgag
gtcgcccgctacgtctcttcagttccaggtctgtgctgcgtcggtccggaacccgtgaag
accaacatcgcctacaaagtggtggcacgagacggacgctccctctacgacttcaacttt
gaaccgcacagcaaagacgtggtgaataaggtcatgacctcgaacatggcagagcccact
tacttcaacgctgacctgctgaaggccttcaggaagaccttcagcacccagtcccacgct
ggcgtgaaggttctggtgatcttctcagacggactggatgaggacgtgatggcactggag
caggaagcagagctcctgcggcagtctggggtcagcgctctgctgacggtggccctggaa
ggggcccgagacccagcccagctgcagatggtggagtttggacgaggattcggctacaag
ctcccgctcagcatcggcatgggcagcgtgggcagcagcctgctgcagcagatcgacgcc
gtggcggaccgtgagtgctgtaacgtcgtgtgcaaatgttccggccctgaaggcacccgg
ggctcccgggggcccccggggtcaaagggccctcctggacacaaaggagtccccgggttc
cccggagacgagggcggcgctggggagcgtggtggtcctggaccgtctggacctcagggg
gtccagggttgttctgggctcagaggaccgaagggctatcgaggtctccgtggtaacagg
ggagaacaaggagaggacgggctagacgggatcgacggagaacgggggcggactggaaca
gatggaggtcgaggaccaagaggagacccaggaaacccaggcatcccggggatccgaggg
gaggcgggtctggcaggacagcgaggactccgaggagatccgggggaaccgggggctgat
gacaccagaccaggagccaaaggagacccggggaacgcaggtctaccgggaacaccagga
caggacgggcgtccaggggaaggaggactcctcggaaacccgggtccagatggaagaaga
ggagccctcggtgggaagggggcacctggagaaccaggagttctaggactccagggcagc
cccggtgcttcaggtcctcagggtaccagtgggctgagaggtcaacctgggccaagaggg
gtcactggactccctggacctcagggaggaccaggatcaagtggagctccaggatcagcc
ggaagatgtggagctaatggacaaaagggccaaccaggggatccaggtgataaaggtgtt
ccaggatcaaagggacccagaggaatggcgggtgaggacggaaaggacggccatggagct
gcaggacttcagggagttcggggagatcctggtttccctggatacccgggtctactgggg
gaaaacggcctgcagggaccgactggacaaccgggacgcaaagggaaccgaggccgaggc
ggaaactcaggccggccgggagaatcgggcgtgtcaggagaacccggatatcgaggtcac
aggggtcccagaggtcttcctggaggaaaaggcatgactgagtgtcagctgatcacctcc
atcagagacaactgtgcgtgttcccccggtccgtccgagtgcccggccttccccaccgag
ctggtgctgggtctggacatgtcggaggacgtgaccccggcggccttcgagcggcagcgc
tccgtcctgctgtcgctgctggagagcatctccgtgtccgagagcaactgcccgacgggc
gcccgtgtggcggtcgtgggctacagcgccgacaccaagtacctgatccgcttccaggac
taccaccgcaagactcagctgatggagtctgtgaggaacatcgccctggagaggacgtcc
aaccggcgccagctgggcgccgccatgcgctttgtgggtcagaacgtcttcaagcgggtc
cgagcaggaatgatgatgaggaaggtggccgtcttcctctccaacgggccgtcggcggat
gtcggcgacatcgtcaccgccgtgatggagtaccgggccgtcggcatcgtgccagcggtc
atctctctgaggaacgctccggctgtgggtcgggccatggaggtcgacgactcgggaagc
tccatcttcagcgttctgggcaaagacatggcggcggacctggagaaggtcaagacgtgt
gcaatctgctacgacccctgccggcgctcggcgcagtgcggcttcatccaggacccggtg
cggcctcaggaggtcgacatggacctggtcttggtggtggacggctccagggaggtacag
gccgacgagtacgccggcgtgcagcagctgctcggctcggtggtggagcagctggtcgtg
agcccgcagccccgcaaggccggtaaccaggcccgggtggccctggtccaactgggcgcc
caggataccacggtcgggtttggcctcgggacctaccagaccaacgccctgatgaggaag
cacctgatccggaacatgacgcagcagggaggctcctcggcgctgggccggacgctggag
ttcaccctgaaggaggtgctgctgaaggccggccagccgcgcaggaggcgggtgctgctg
gccgtggtgggaaccccgacggcccgcgaggaccgagccaagctgcgctacatttccaag
aaggccaagtgtgagggggtggcgctgttcgtggtgacggtcggagatcgctacgaccgg
tcgcaggtggaggatctggtcagtctgccggtccaccagcacctgatccacatcgggagt
ctgaagactggcgagcagctctacgcacagcgcttcttcagggtcttcctctccgccctc
agcaagggaatgaactcgtatcctcctgcgtcctccaaacggacatgtgaccagctgacg
ggacaaaccggaggacagacgtccatcaacggtcaggggacggcagtggtggactggaaa
gagttcaaggaggaggaggaagaggagagcttccaggaacagaccagaggacagactcag
accggccagctggacatcgtccacagtctgactggcggagacggacagagactcatcgct
aacgatcaaaacctgttgccgagtcctgagctggccagcttcttctccaaagagcgctgt
ctcctcagccaggaccagggcggctgccagaactacaccatgatgtggttcttcgacagc
cagcaggaggcgtgctctcgcttctggttcggcggctgcggcggcaacgagaaccgcttc
aagacgcaggacgagtgcgagaacctgtgcgtggcgaagagccgatga
DBGET
integrated database retrieval system
