KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130213105
Entry
130213105         CDS       T09868                                 
Symbol
xrcc1
Name
(RefSeq) DNA repair protein XRCC1 isoform X1
  KO
K10803  DNA-repair protein XRCC1
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    130213105 (xrcc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pswi03400]
    130213105 (xrcc1)
DNA repair and recombination proteins [BR:pswi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     130213105 (xrcc1)
SSDB
Motif
Pfam: XRCC1_N BRCT PTCB-BRCT BRCT_2
Other DBs
NCBI-GeneID: 130213105
NCBI-ProteinID: XP_056300515
LinkDB
Position
22:complement(6232185..6257340)
AA seq 633 aa
MPEIQLKHVVSCSTEDVTHKADNLLSSDTYRKWKAARDGEKQTSVILQFEKQEQVHSIDI
GNEGSAFIEVLVGNSLTVRDQDYEVLLVTSSFMSPTESRNGTNMNRVRFFGPHQLQKSSA
QEKWDRVKIVCSQPYSKNIAYGLAFVKFHSPPDKNDPPPISSPKLTKLGQFRVKDESPST
SPSLQPGSLFFSRDNATKSSTPVKVSPQSERLSYAAAALQVGGGSHSSGQASSSSSASPQ
TPAKRKFEFSKERQSDSGPPPAKKTGPGASPEVKAATPKHKPSPAGTPSPAGTPSPGAAK
ASPAQKSADKKRESHSKHEPKPKQEKASGTQVPFKRMMEGVVFVLSGFQNPFRGELREKA
LDMGAKYRPDWTPDATHLICAFANTPKYSQVKSAGGTIVRKEWVMDCHQRKQKLPSKRYL
MDGGESSSESEMEVDDQSEEETNTKSPQKPQRQVTPKKTPEKRKDDDEYAGSTDVEEPGG
SDEGSAVDTEDELQRVENESRQKKAAADGRQVMQEDPYGGSTDENTDAEAEEDHPIPVLP
GADGERQSELRQTGLDLRNQPAAEDAALPALHGRALSNDLQPGVHRHTRTSHPEQWGTPR
TFFFLPFSDHFQKSNKVPAHCKLMKCSWSSGVL
NT seq 1902 nt   +upstreamnt  +downstreamnt
atgccagaaatccaactcaaacacgtcgtgtcttgcagcaccgaggacgtcacccacaaa
gcagacaacctgctgagctccgacacctacagaaagtggaaagcagcgcgagacggggag
aagcagacctcggtcattctgcagttcgagaagcaggagcaggtgcacagcattgatatt
gggaatgaaggctcggctttcatcgaggtgctggtggggaattctttgactgtcagagac
caggactatgaggttctcctggtcacgtcttccttcatgtcccccacggagagccgcaac
ggcaccaacatgaaccgggtgcgtttctttgggccccaccagctgcagaagagctcggca
caggaaaagtgggacagagtgaaaattgtgtgtagccagccatacagcaagaatatagcg
tacggactggcctttgttaagtttcattcgccgcctgacaaaaatgatccgcctccaata
tcctccccgaaactgacaaagttgggccagttcagagtgaaggacgagtctccttcaacg
agtcccagccttcagcccggaagtctcttttttagtcgggacaatgcaacaaagtccagt
accccagtcaaagtgtctccccagagtgagcgcttgagttacgctgctgccgccctgcag
gttggtggcggctcccattcgtcaggccaagcgtcctcctccagctctgcctcaccacag
acgccagcaaagagaaaatttgagttcagcaaagagcgtcagtctgactccggcccgccg
cccgcgaagaaaaccggcccgggtgcctcaccagaggtcaaggccgcgacgcccaaacac
aagccgagcccggccggcacgccgagcccggccggcacgccgagccccggcgccgccaaa
gcttccccggcacagaagtctgcagacaagaagcgggagagccattccaaacacgagcct
aaacccaaacaagagaaagccagcgggacgcaggtcccgttcaaacggatgatggaaggc
gtcgtgtttgtcctcagcggcttccagaaccccttcagaggggagctcagggaaaaggct
ctggacatgggggctaagtatcgacccgactggacacccgacgccacacacctcatctgt
gccttcgccaacacccccaagtacagccaggtgaaatcagcagggggcaccatcgtacgg
aaggagtgggtcatggactgccaccagaggaaacagaagctcccctccaaacggtatctg
atggatggaggcgagtcgagctcggagagcgaaatggaagtggacgaccagagcgaggag
gaaacgaacacaaagagtccgcagaagccgcagaggcaggtgacccccaaaaagacaccg
gagaagaggaaggatgatgacgagtatgccggctccactgatgtggaagaaccaggaggc
agtgatgaggggtctgccgtggacacggaggacgagttgcagagggtggagaacgagagc
agacagaagaaagcagcagcggacgggaggcaggtgatgcaggaggatccgtacgggggc
tccacagatgaaaacaccgacgccgaggctgaggaggaccaccccatccccgtgctgcca
ggcgctgatggagaacggcaatctgaacttcgtcaaaccggcctggatctacgcaatcaa
ccagcggcagaagacgctgccctaccagccctacacggtcgtgccctgagcaacgaccta
cagccaggtgtgcacagacacactcgcacttcgcatcctgaacaatggggaacgccacgg
acatttttttttcttcctttttcagatcactttcagaaaagcaataaagttcccgctcac
tgtaaacttatgaaatgttcttggtcctcgggggttttgtga

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