Pseudoliparis swirei (Mariana hadal snailfish): 130213145
Help
Entry
130213145 CDS
T09868
Symbol
ddx61
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130213145 (ddx61)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130213145 (ddx61)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130213145 (ddx61)
Enzymes [BR:
pswi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130213145 (ddx61)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
130213145 (ddx61)
mRNA degradation factors
5'-3' decay
Decapping complex
130213145 (ddx61)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
130213145 (ddx61)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
130213145
NCBI-ProteinID:
XP_056300574
LinkDB
All DBs
Position
22:complement(8676879..8685752)
Genome browser
AA seq
486 aa
AA seq
DB search
MATARTANSAPMIGLNKPANGQLRGQAGLLGSAQQPNALQKRTGIPQSSGGIKFGDDWKK
CLELPPRDTRMRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESIPIALSGR
DILARAKNGTGKSGAYLIPLLERIDLKKDHIQAIVMVPTRELALQMSQISIQLSKHLGGV
KVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKMDKAQLIVMDEADKLLSQ
DFVVLIEDIISFMPRDRQILLYSATFPISVQKFMSKHLKKPYEINLMEELTLKGITQYYA
YVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRN
RVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLA
INLITSEDRYNLKNIEDQLVTDIKPIPSCIDKSLYVAEFHSVDPDADDDDIGGEIGGAKS
KELGAI
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcaaggacggcaaactcggcaccaatgattggattgaacaaaccagcaaat
gggcagctcagaggacaagcgggactcctcgggtctgcccaacagcccaatgccctccag
aagaggaccggcattcctcaaagcagtgggggcatcaagtttggtgatgactggaagaag
tgcctggagcttcctccaagagacaccaggatgagaacttcggatgtgacatcaactaag
ggaaatgaatttgaagactactgcctaaagcgggaactgcttatgggaatctttgaaatg
ggatgggagaaaccgtcccctgtccaggaggaaagcattcccatcgctctgtcaggcaga
gatattttggctcgggccaagaatggcacaggaaaaagtggagcctacctcatccccctc
ctggagaggatagacctgaagaaggatcacatacaggccatagtaatggtgccaacgaga
gagttggccctgcagatgagccagatcagcattcagctcagcaagcacctgggaggtgtc
aaggtcatggctaccacaggtggcaccaatttgagggatgacatcatgcgtcttgacgag
acagtgcatgtagtgattgctactccaggcaggatacttgaccttatcaaaaagggtgtg
gcaaaaatggataaggcccaattgattgtgatggacgaggcagacaagctgctttcccag
gactttgtggttctgatcgaagatataatcagcttcatgccaagggatcgtcagattctg
ctttactctgccacttttcccatcagtgtgcaaaaattcatgagtaagcacctgaagaag
ccttatgagatcaacctgatggaggaactgaccttgaagggcatcactcagtactatgcc
tatgtgacagaaagacaaaaggttcactgtctcaacacactgttttctaggcttcagatc
aatcagtccatcatcttctgtaactcaacccagagggttgagcttctggccaagaaaatc
acccaactcgggtattcgtgcttctacattcatgcaaagatgatgcaggaatacaggaac
cgtgtgttccatgacttcaggaatggattgtgcagaaacttggtctgcacagaccttttc
actcggggcattgacattcaggcggtaaatgtggtcatcaactttgacttccccaaaaat
gcagagacctacctgcaccgcattggaagatcagggcggttcggtcatctgggtctggcc
atcaatctgatcacttcagaagatcgctacaacctgaagaacattgaggatcaactggtc
actgacattaagcccatccccagttgcatcgacaagagcctgtatgtggcagagtttcac
tccgttgacccagatgcagatgacgacgacattggtggcgaaatcggcggagcaaaaagc
aaggaactgggagcaatctga
DBGET
integrated database retrieval system
