Pseudoliparis swirei (Mariana hadal snailfish): 130213288
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Entry
130213288 CDS
T09868
Name
(RefSeq) E3 ubiquitin-protein ligase NHLRC1-like
KO
K10602
E3 ubiquitin-protein ligase NHLRC1 [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130213288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130213288
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130213288
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130213288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
RING_XB3-XBAT31
Glutaminase
EPO_TPO
zf-RING_4
DUF4774
Zf-C2H2_ZNF451_2nd
Motif
Other DBs
NCBI-GeneID:
130213288
NCBI-ProteinID:
XP_056300754
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All DBs
Position
22:complement(11381506..11383187)
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AA seq
410 aa
AA seq
DB search
MAKSLGSPSRGNLSPEGIVREIQINLLECKVCFEKFSTQQKEHKPQNLSCGHVLCLECIR
ALSHPLLRKLECPFCRQLCSIDSTSHCQALSDLQELLLSQTPPSSAPPHRASAGLGLTST
ALHLCTAFGGWGSLINPTGIAVSGLSGTIVVVHDGEKRVAVFSPQGRKLHSFGRRGQGSG
EICFPVDVAVTPCGHVVVTDAGDKAVKVFSSGGNHVVTVKDSLQMPWGVDTNSSGHILVS
DIQAGTLSQVKVDYSHGVALENQTVIADLQHPKAVACCRVTGNTAVMENLPDDTPSPGRN
QHTRLRVFTEDFHLLYQTDSFSLTLQFTVSLNMSGVAFDRDGDVIVIDSIQGMIWSLGKL
LKGPTPTPLVGDHLINPVGLVSLNNTLVVLDSGDHAVKIYSARSDAGPMI
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggctaagagtcttggttccccgagtcgtggcaacctgagcccagaggggattgtaaga
gagatccagatcaacttgctggagtgtaaagtctgcttcgagaagttcagcactcagcag
aaggagcacaaaccacagaacctttcctgtggccatgtactctgtctggaatgcatcagg
gctttgtcccaccctctcctgaggaagctggagtgcccgttttgtcgacagctgtgcagc
attgacagcacttcccactgccaggctctcagtgacctgcaggagctgctgttgtcccaa
actcccccatcttctgctcctcctcacagggcgagtgcaggtcttggcttgacatccaca
gctctgcacctctgcacagcctttggagggtgggggagtcttatcaatcccactggcatt
gccgtttcgggattgtcggggacgatagttgtggtgcatgatggagagaagagggtggcg
gtgttcagtccacagggcaggaagctgcacagttttgggagaagaggacaaggcagtggg
gagatctgcttcccagtggatgtggcggtgactccctgtggtcacgtggtggttactgat
gcaggggataaagctgtgaaggtgttctcctctgggggtaaccatgttgtgacggtcaaa
gattccctccagatgccctggggtgtggacacaaacagctcggggcacatcctggtctca
gacatccaggccggaacgctgtcccaggtaaaagtggactattctcacggtgtcgctcta
gagaatcaaacagtcattgcagacctgcagcatccaaaagcggtggcctgctgccgggtc
actgggaacactgcagtgatggagaatttacctgatgacacgccttcaccagggaggaac
cagcacacgaggctgagagtgtttacggaagacttccacctcctctatcagactgacagc
ttcagcctgaccctgcagttcacagtgagcctcaacatgtcgggcgtggcctttgacaga
gatggagatgtgattgtgattgactccattcaggggatgatttggagtttggggaagctc
ctgaaaggcccaaccccgaccccacttgtgggagaccacctcatcaacccagttggactg
gtgtcactgaacaacaccctcgtcgttctggacagcggagaccatgcggtgaagatttat
tctgctagatctgatgctgggcccatgatatag
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