KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130213353
Entry
130213353         CDS       T09868                                 
Symbol
wdtc1
Name
(RefSeq) WD and tetratricopeptide repeats protein 1
  KO
K11807  WD and tetratricopeptide repeats protein 1
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pswi04121]
    130213353 (wdtc1)
Ubiquitin system [BR:pswi04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     130213353 (wdtc1)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd EIF3I WDR55 Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st WD40_RFWD3 ANAPC4_WD40 TPR_19 Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 TPR_2 ANAPC3 NBCH_WD40 Beta-prop_TEP1_C Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_IFT122_1st TPR_1 Beta-prop_WDR35_TULP_N Beta-prop_RIG_2nd Beta-prop_WDR19_1st TPR_17 TPR_16 TPR_9 TPR_6 Barstar
Other DBs
NCBI-GeneID: 130213353
NCBI-ProteinID: XP_056300878
LinkDB
Position
22:9416354..9425060
AA seq 676 aa
MFCGEAMTTVNITRDILHRQIRDKRAAGFQRSYHVTDPFIKRLGLEAELQGHTGCVNCLE
WNERGDLLASGSDDQHAIIWDPFKHTKLTTMHTGHAANIFSVKFLPHSGDRILITGAADT
KVHVHDLTVKETIHMFSDHTNRVKRIATAPMWPNTFWSAAEDGIIRQYDLRESSKRSDVL
IDLTEFCGQLVEAKCLAVNPRDNNYMAVGANGPFVRLYDIRMINKYRKSLNQSTSAAVHT
FCERQKPIPDGAGQYYVAGHLPVKLPDYNNRLRVLVATYVTFSPDGTELLVNMGGEQVYL
FDLTFKQRPYTFLLPKKCQSSTGDVKNGKTTNGVSNGIVLPTSRIRIAGSKMRSSSTELP
VHLEKIKQQANDAFARQQWTQAIQLYSLGIHQASCNAMLYGNRAAAYMKRKWDGDHYDAL
RDCLKALTLNPGHLKAHFRLARCLFELKYVSEALECLDDFRGKFPEQAQSSACDSLDKDI
KAALFTKTETAEDKKDNSSIRFHSLNRKESIPEDELVLRERSFDYKHRYCGHCNTTTDIK
EANFFGSKGQYIVSGSDDGSFFIWEKETTNLVRILQGDESIVNCLQPHPNYCFLATSGID
PVVRLWNPRPETETENGRVVEDMESAAQANQRRMNADPLEVMLLNMGYRITGLRGVGSDG
SDDEDSSEGQVQCRPS
NT seq 2031 nt   +upstreamnt  +downstreamnt
atgttttgtggtgaggccatgactactgtcaacatcacccgcgatatcctgcaccggcag
atcagagacaagagagcggcaggcttccaaaggtcctatcatgtgactgatcctttcatc
aaaagacttggactggaggctgagcttcagggtcatactggctgtgtgaactgtttggaa
tggaatgaacgaggagatttacttgcctcgggctcagacgatcaacatgccatcatctgg
gatccattcaaacacacaaagcttacaactatgcacacgggtcatgcagcaaatatattc
tctgtgaagttcctccctcactcaggggacagaattctgataacgggtgcggccgacaca
aaggtccatgtgcatgacctgacggtaaaggaaaccatccacatgttttctgatcataca
aacagagtgaaacgcattgccacagcacccatgtggcccaataccttctggagtgctgca
gaggacggcatcatccgacaatatgacttgcgggagagcagtaagcgctcagacgtgctg
atcgacctgacggagttctgtggtcagctggttgaggccaagtgtctcgcggtgaaccct
cgggacaacaactacatggcagtgggagccaacgggccttttgttcgcctttatgacatc
aggatgattaacaagtacagaaaatctttaaaccagagcacatcagcagctgtgcacaca
ttctgtgaaaggcagaagcccatcccagacggagctgggcagtattatgtcgcaggacac
ctgccagtgaaactcccagactacaataatcgcctgagggttctggtggccacctatgtc
accttcagccccgatggcactgagctactagttaacatggggggtgaacaggtgtatctg
tttgacctgacgttcaaacagaggccatacaccttcttacttccaaaaaagtgccagtca
tcaacaggagatgtaaagaacggaaagacgaccaatggcgtctcaaacggaatcgtcttg
ccaaccagccgtattcgaattgctggaagcaagatgcgttcgagttctaccgagctccct
gttcacttggagaagataaagcaacaagctaatgatgcatttgcacggcagcagtggacg
caggctatccagctgtacagtttaggcattcaccaggccagctgcaacgccatgctgtac
gggaaccgggcagcagcatacatgaaacgcaagtgggacggagaccattatgacgccctt
agggactgcctgaaggctctcactctaaatcctggtcatctgaaggctcatttcaggctg
gcacgctgtctgtttgagctgaagtatgtgtctgaagctctcgagtgtctagatgatttc
agagggaagtttccagagcaggcgcaaagtagtgcctgtgattccttggataaagatatc
aaggctgctctcttcaccaagacagaaacagccgaagataagaaggacaacagctccatt
cgattccactccttgaatcggaaggagtccatccctgaagatgagctggtgctgagagag
cgcagctttgactacaagcacagatactgcggtcactgcaataccaccactgatatcaaa
gaggccaacttctttggaagcaaaggccagtacattgtcagcggctccgacgacggctca
ttctttatctgggaaaaggagactaccaatctggtgaggatcctgcagggggatgagtcc
atcgtcaactgcctgcagccccaccccaactactgcttcctggctacgagtggtattgac
cccgtggttcgattgtggaaccctagaccagagacggagactgagaacgggcgcgtggtg
gaggacatggagagtgctgctcaggcgaaccagcggcgtatgaacgctgatcccttggag
gtcatgctgctcaacatgggctatcgcatcacagggctgcgaggcgttggctccgatggc
tccgatgacgaagacagctcagagggacaagtgcagtgtcggccgagctaa

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