Pseudoliparis swirei (Mariana hadal snailfish): 130213365
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Entry
130213365 CDS
T09868
Symbol
cspg5a
Name
(RefSeq) chondroitin sulfate proteoglycan 5 isoform X1
KO
K08116
chondroitin sulfate proteoglycan 5
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pswi00535
]
130213365 (cspg5a)
Proteoglycans [BR:
pswi00535
]
Cell surface proteoglycans
Others
130213365 (cspg5a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Neural_ProG_Cyt
TMEM213
VWC2L_C
YxzE
Motif
Other DBs
NCBI-GeneID:
130213365
NCBI-ProteinID:
XP_056300897
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Position
22:complement(3655408..3685787)
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AA seq
534 aa
AA seq
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MQGKEASSCTGCWRLTLLSCVLVLHWTPLPVHGNVVGTNVTEPDSVANVTSLLSEEEGPV
AVIAAVTGMSSSAGPATAAPEPPAAAAGPTPRASEEDEQSSGMFGDATVRPLEEAGVAAP
PQLSPDSAETEHLLPGGEVAQSEEEVVAEEEEEEERSPHTDPPWIHAEDTAVFDMDDLFT
AAAAAAAAQPTAATNPASPDVLHVDFFDPSSRGRGLDLAPPSPSSLAHELQGGDSTSWAM
PGSYDYLTPYEDGASPTADEFTYSTTTDAHESDDDLRLSAGSRPKPRAPGPDVGPPAPKG
PAAAPPPPPPAAASPVDGSDGMGGCRAGFQVGNGSCRSPCDTLPNFCFNGGQCYLMEGMG
VFCRCNTQDYIWHKGARCESVVTEFQVMCLAVGASALVVLLLFMIVVCFAKKLHVLKTEN
NKLRKRSSKYRPSSEQHNDNFSLSTIAEGSHPNVRKLCDTPPNVPHARALAYYDNIICQD
DPNSQNKLEDPVKAQPKEDDSLNIHNSLTPKHENHKVLGEDNSSEVNSLQNNMM
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgcaggggaaggaggcgagctcgtgcacgggatgctggagactaacgctgctgtcgtgc
gtcctggttctgcactggaccccgctgccggtgcacggaaatgttgtcggcaccaacgtc
acggagccggacagcgtggccaacgtcacctccctgcttagcgaggaggagggccctgtc
gcggtcatcgccgcggtaaccgggatgagcagctcggccggtcccgccaccgcggccccc
gagccgccggcggcggcggcgggcccgaccccccgcgccagcgaggaggacgagcagagc
agcggcatgttcggcgacgcgacggttcgcccgttggaggaagcgggcgtggcggccccg
ccccagctgagccccgactcggccgagacggagcacctgctgcccggcggcgaggtcgcg
cagagcgaggaggaggtggtggcggaggaggaggaagaggaggagcgttcgccgcacacc
gacccgccgtggatccacgccgaggacacggccgtctttgacatggacgacctcttcacc
gccgccgccgccgccgccgccgctcagcccaccgccgccaccaaccccgcctcccccgac
gtcctccacgtggacttcttcgacccctcttctcggggccgtggcctcgacctggccccg
ccctctccttcatcgctggcccacgagctgcagggaggcgactcgacctcctgggcgatg
ccgggcagctacgactacctcaccccttacgaggacggcgcgtcccccaccgccgacgag
ttcacctacagcaccacgacggacgcccacgagagcgacgacgacctccgcctctccgcc
gggtctcgacccaagcctcgggccccgggccccgacgtcggacctccggcaccgaagggc
cccgcggcggctcctcctcctcctcctcccgcggcggcctcgccggtggacgggtcggac
gggatgggcgggtgccgcgcggggttccaggtggggaacggaagttgccgctcgccatgc
gacacgctgcccaacttctgcttcaacgggggccagtgttacctgatggagggcatgggg
gtcttctgcagatgtaacacccaggactacatctggcacaagggcgcgcgctgcgagtcg
gtggtgacggagttccaggtgatgtgtctggccgtgggcgcctcggctctggtggtgctg
ctgctcttcatgatcgtcgtctgcttcgccaagaagctccatgtgctcaagacggagaac
aataagctgcgcaagcgcagcagtaagtaccggccttcctcggagcagcacaatgataat
ttctcgctgtccaccatcgctgagggctcccacccaaatgtaaggaaactgtgcgacacc
cctcctaacgtccctcatgcccgtgcattggcttactatgataacattatctgtcaggac
gatcctaattcccagaacaagctggaggacccggtgaaggcccagcccaaggaggacgac
tctctcaacatccacaactccctgacccccaaacacgagaaccacaaggtcctgggcgag
gacaactcctcggaggtaaactcactgcagaacaacatgatgtga
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