Pseudoliparis swirei (Mariana hadal snailfish): 130213390
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Entry
130213390 CDS
T09868
Symbol
sox4b
Name
(RefSeq) transcription factor SOX-4b
KO
K23581
transcription factor SOX4 (SOX group C)
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130213390 (sox4b)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
130213390 (sox4b)
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Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
130213390
NCBI-ProteinID:
XP_056300958
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Position
22:16665076..16669566
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AA seq
407 aa
AA seq
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MVQKMSHTESTAEALSFFAGDSSSDSGACMDLDLAASPLSPASTAGENPAWCKTPSGHIK
RPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLRDSDKIPFIREAERLRLKHM
ADYPDYKYRPRKKVKSSASKPGSNGDKSEKLSGNSNNTSTKTSSSSRKNGSKSPSSSSSK
PHKSLFGSSSSSSTKASPFASEHASEHHHNNLYKSKSVSSAAKQIPDGKKPKRVYVFGSS
GANLSVCPASSVVVPASPTLSSSADSSDPLSLYEDAASGREEGADSPGSGGSLGGSSERN
GGHTYSSRRASSPTRSGSHWSHSSASSSSEDEEFEDDLLDINPSPSFDTMSMGSFGSSVL
DRDLDLNFESGSGGSHFEFPDYCTPEVSEMISGDWLESTISNLVFTY
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggtgcagaaaatgagccacacggagagcaccgccgaggcgctgtcctttttcgccgga
gattccagctccgactccggggcgtgcatggacctggacctggccgcctcgcctctctcc
ccggcttcgactgccggggagaacccggcgtggtgtaaaacgcccagcggccacatcaag
agacccatgaatgcgttcatggtgtggtcccagatcgagaggaggaagatcatggagcag
tcccccgacatgcacaacgccgagatctccaagaggctggggaagcggtggaagcttctc
agggacagcgacaagatccccttcatcagggaggcggagcggctcaggctcaagcacatg
gcggactaccccgactacaagtaccggccgaggaaaaaggtgaagtcaagcgcctccaag
cctggtagtaacggggacaagagtgagaaactcagcggtaactccaacaacaccagcact
aagacatcatcatcttccaggaagaacggatccaaatcacccagcagcagcagcagcaaa
ccccacaaatcacttttcgggagcagcagcagtagcagcaccaaagcatcaccgtttgcc
tccgagcacgcgtcagagcaccaccacaacaatctctacaagtcgaaatccgtctcctcg
gcggccaagcagataccggatggcaagaagcccaagcgggtgtacgtgttcgggagcagc
ggggccaacttgagcgtctgccccgcgtcctccgtcgtggtgcccgccagcccgacgctc
agcagctcggcggactccagcgacccgctcagcctgtacgaggacgcggccagcggcagg
gaggagggggccgactcccccggcagcggcggcagcctaggcgggtcttcggagcgcaac
ggcgggcacacgtacagcagtcggcgggcttcctcgccgactcgctccggctcccactgg
tcccactcgtccgcctcctcttcctcggaggacgaagagttcgaggacgacttgctcgac
attaacccgagccccagctttgacaccatgtcgatgggcagcttcggctcctcagtgctg
gacagggacttggatctgaactttgagtccggctccggcggctctcactttgagttcccc
gactactgcacgcctgaagtcagcgaaatgatatccggggactggctggagtccaccatc
tccaacttggtgttcacgtactga
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