Pseudoliparis swirei (Mariana hadal snailfish): 130213392
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Entry
130213392 CDS
T09868
Name
(RefSeq) E3 ubiquitin-protein ligase RNF43
KO
K15694
E3 ubiquitin-protein ligase RNF43 [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
130213392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130213392
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130213392
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130213392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZNRF_3_ecto
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-RING_5
zf-ANAPC11
PA
zf-C3HC4_3
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
130213392
NCBI-ProteinID:
XP_056300963
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All DBs
Position
3:complement(13177117..13251686)
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AA seq
818 aa
AA seq
DB search
MTVAQRRLAGLWPWLLVAALQVVLGQPGLESERPVLRAVIKVALLNHEPTGKPITLEGVF
VGGSAGYAEGKLMQYHPLSLCNTSEDERQESPFITIVKLEHRVPRCLPLLDKARMALDKG
AQAVIFDVSDDANAAAELRETDSLPRPVVLVEAEDAEELMGLVNKNEEAKVRIEIMVEQP
RWPHYDVGILLTIVLAILTIVLIFAFRYKCKSNRTWDSVHQQTMQAISRLETTTYSSQGC
SGSQRHRAAWGSASSSNSSPVCAICLEDFQDGQHLRIISCAHEFHKDCVDPWLLQHRTCP
LCMHNIMGTERQHQRNRLQPSPEQSQGFLHPQPYSSPRNHPFPQHAIPFSMRPHYPRGPS
GHYPSLSHYAGPSAVDPQTLHFLASRPLASGCGYHLPAEGPGRAHRIGGNCRTSTHHYTP
RRSCQNYRSSCPAQRSLSSSRLHHVVSVAPQVCVAPAHGRQDNASCSDGSYHTERSGYLA
DGPASDSSSGPCHGSSSDSVLNCTDVSLQGVYGSWSTFRSSLSSDYDPFVYYGPGSGRAP
RRSSLEACAQARPRSLDSVVNKTGCPEEQLQTVFSHIHYHRHRHHHYEEGELSQGPSRGS
DEEQGAAAAAAAAAAAAAAAPATLVLERDSPVCPPKHSQCPKSEPTDGPSPGTECQDHDP
SSPTVPPVRVQLQPHCCHQGHGHPPAPLGRVGGCVRDGPSVRFHQSLDLQDERSIHIHYG
QGPGFCCSPPDLHPALLPVPLILDSGGMEDWPCYAGAHVVWQKRVQQAHSEPQLLGPGTS
TDRPPCRFHHSPADHNTDICLYCQTLHHNQGSEEESGV
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtcgcgcagcggcgcctggccgggctctggccgtggctgctcgtggcggccctg
caggtggtgctgggccagccgggcctggagtccgagcggccggtcctccgagcggtcatc
aaggtggcactgctgaaccacgagccgacggggaagcccatcaccctggagggggtgttc
gtgggaggaagtgccggctacgcggaggggaaactaatgcagtatcaccctctgtctctg
tgcaacacaagcgaggatgaacgacaagagagtcccttcatcaccattgtcaaactggag
cacagggtcccccgctgtctgccgctgctcgataaggcccgcatggcgttggacaaaggg
gctcaggctgttatctttgatgtcagtgatgacgccaacgctgcggctgagctgcgagaa
acggactcccttccacgtccagtcgtgctggtggaggcggaggatgctgaggagttgatg
ggtctggtcaacaagaacgaagaggccaaagttcgtatcgagatcatggtggaacagccc
agatggccacattatgatgtgggtatcctgctcaccatcgtcctcgctattctgaccatc
gtcctcatcttcgctttccgctacaagtgcaagtccaacaggacctgggactctgtccat
cagcagaccatgcaggccatcagtcgactggagaccacgacctacagctcccagggctgc
tcgggctcccagcgccaccgagcggcctgggggtcagccagcagctccaactccagcccc
gtctgtgccatctgcctggaggacttccaggatgggcagcatttgaggatcatctcctgt
gcccatgagttccacaaagattgcgtcgacccctggctgcttcaacaccgcacctgtccc
ctctgcatgcacaacatcatggggacggagcggcagcaccagaggaacaggctccagccg
agtccagagcagagccagggtttcttgcaccctcagccttacagcagcccgcgcaaccac
cccttcccccagcatgccatccccttctccatgaggccccactatcctcggggaccctct
ggacattatccctcgctcagccactacgctggcccttccgccgtggatccccaaacacta
catttcctcgccagcaggccgcttgcgtcgggctgtgggtaccaccttcctgcagagggt
cccgggagggcccacaggatcggaggtaactgcaggacgtccacgcaccactacaccccc
cgccggtcctgccaaaactatcgctcgtcctgtccggcccagcgcagtttgtccagctca
cggctgcaccacgtcgtctccgtcgcgccacaggtctgcgtggcgccggcccacggcagg
caggacaacgccagctgctccgacggcagctaccacacggagcgcagcggatacttggcc
gacgggcctgcgagtgactccagctcgggaccctgccacggctcctccagcgactccgtt
ctcaactgtaccgacgtgtccctgcagggggtttatggcagctggtccaccttccgtagc
tctctgagcagtgactacgatccgtttgtgtattacgggccgggttctgggcgcgccccc
cgcaggagcagcctggaggcatgcgcccaggcccggcccaggtctctggattctgtggtg
aacaaaacgggttgccccgaagagcagctgcagactgtgttcagtcacatccactaccac
cgccacagacaccaccactacgaggagggggagctcagccagggcccgagcagaggctcg
gacgaggagcagggggcggcggctgctgctgctgctgctgctgctgctgctgctgctgca
cctgccactcttgtccttgaaagagactcgcctgtctgccctcctaagcacagccagtgc
ccaaagtcagagcccacagatgggcccagccctgggacagagtgccaggaccatgacccc
agcagccctacagtacctcctgtcagggtacagcttcaaccccactgctgccaccaggga
cacggacaccctcccgctcctctcgggcgagtgggtggctgtgtgcgtgatggcccctct
gttcgcttccaccagagcctcgacctgcaggatgagcgtagcatccacatccactatggt
cagggcccaggcttctgctgctcgcctcctgatttgcaccctgccttgctccccgtgcct
ctcattctggactctggaggtatggaggactggccttgctatgccggggcccatgttgtg
tggcaaaagcgggtgcagcaggcccactcagagcctcagctcttggggccggggacctct
acggacagaccaccctgcaggttccaccacagccctgctgaccacaacacagacatttgt
ttgtactgccaaacattgcaccacaatcagggatcagaagaggagtctggtgtgtga
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